RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 SDK1Q7Z5N4 2213 aa15.9■□□□□ 0.14
CLN3-222ENST00000566083 KIF26AQ9ULI4 1882 aaPredicted RBP15.9■□□□□ 0.14
CLN3-222ENST00000566083 ATP8B3O60423 1300 aa15.89■□□□□ 0.13
CLN3-222ENST00000566083 A8MXQ7 604 aa15.89■□□□□ 0.13
CLN3-222ENST00000566083 SLC9A3R1O14745 358 aaPredicted RBP15.89■□□□□ 0.13
CLN3-222ENST00000566083 HRO43593 1189 aa15.89■□□□□ 0.13
CLN3-222ENST00000566083 AKAP3O75969 853 aa15.89■□□□□ 0.13
CLN3-222ENST00000566083 NFATC1O95644 943 aa15.89■□□□□ 0.13
CLN3-222ENST00000566083 P4HA1P13674 534 aa15.89■□□□□ 0.13
CLN3-222ENST00000566083 ARSAP15289 507 aa15.89■□□□□ 0.13
CLN3-222ENST00000566083 PTPN1P18031 435 aaKnown RBP15.89■□□□□ 0.13
CLN3-222ENST00000566083 GJA4P35212 333 aa15.89■□□□□ 0.13
CLN3-222ENST00000566083 CUL4BQ13620 913 aa15.89■□□□□ 0.13
CLN3-222ENST00000566083 MDH1BQ5I0G3 518 aa15.89■□□□□ 0.13
CLN3-222ENST00000566083 WDR44Q5JSH3 913 aa15.89■□□□□ 0.13
CLN3-222ENST00000566083 SCARA3Q6AZY7 606 aa15.89■□□□□ 0.13
CLN3-222ENST00000566083 FSTL4Q6MZW2 842 aa15.89■□□□□ 0.13
CLN3-222ENST00000566083 SLC9A9Q8IVB4 645 aa15.89■□□□□ 0.13
CLN3-222ENST00000566083 ARL14EPQ8N8R7 260 aaPredicted RBP15.89■□□□□ 0.13
CLN3-222ENST00000566083 SH3RF2Q8TEC5 729 aa15.89■□□□□ 0.13
CLN3-222ENST00000566083 CD101Q93033 1021 aa15.89■□□□□ 0.13
CLN3-222ENST00000566083 ACDQ96AP0 544 aa15.89■□□□□ 0.13
CLN3-222ENST00000566083 TNIP3Q96KP6 325 aa15.89■□□□□ 0.13
CLN3-222ENST00000566083 EXOC1Q9NV70 894 aa15.89■□□□□ 0.13
CLN3-222ENST00000566083 OBSL1O75147 1896 aa15.89■□□□□ 0.13
CLN3-222ENST00000566083 NCOR2Q9Y618 2525 aa15.89■□□□□ 0.13
CLN3-222ENST00000566083 SPAG17Q6Q759 2223 aa15.88■□□□□ 0.13
CLN3-222ENST00000566083 OTOL1A6NHN0 477 aaPredicted RBP15.88■□□□□ 0.13
CLN3-222ENST00000566083 HCRTO43612 131 aa15.88■□□□□ 0.13
CLN3-222ENST00000566083 RTN3O95197 1032 aaPredicted RBP15.88■□□□□ 0.13
CLN3-222ENST00000566083 RPN1P04843 607 aaKnown RBP15.88■□□□□ 0.13
CLN3-222ENST00000566083 TGM1P22735 817 aa15.88■□□□□ 0.13
CLN3-222ENST00000566083 GALK1P51570 392 aa15.88■□□□□ 0.13
CLN3-222ENST00000566083 CLDN10P78369 228 aa15.88■□□□□ 0.13
CLN3-222ENST00000566083 BIRC3Q13489 604 aa15.88■□□□□ 0.13
CLN3-222ENST00000566083 CSRP2Q16527 193 aa15.88■□□□□ 0.13
CLN3-222ENST00000566083 EML3Q32P44 896 aa15.88■□□□□ 0.13
CLN3-222ENST00000566083 FOXD4L6Q3SYB3 417 aaPredicted RBP15.88■□□□□ 0.13
CLN3-222ENST00000566083 HEATR6Q6AI08 1181 aaKnown RBP15.88■□□□□ 0.13
CLN3-222ENST00000566083 FOXD4L3Q6VB84 417 aaPredicted RBP15.88■□□□□ 0.13
CLN3-222ENST00000566083 DDX42Q86XP3 938 aaKnown RBP eCLIP15.88■□□□□ 0.13
CLN3-222ENST00000566083 STKLD1Q8NE28 680 aa15.88■□□□□ 0.13
CLN3-222ENST00000566083 PDZD8Q8NEN9 1154 aa15.88■□□□□ 0.13
CLN3-222ENST00000566083 NETO1Q8TDF5 533 aa15.88■□□□□ 0.13
CLN3-222ENST00000566083 OVCA2Q8WZ82 227 aa15.88■□□□□ 0.13
CLN3-222ENST00000566083 CCDC47Q96A33 483 aaKnown RBP15.88■□□□□ 0.13
CLN3-222ENST00000566083 MRPL45Q9BRJ2 306 aaKnown RBP15.88■□□□□ 0.13
CLN3-222ENST00000566083 NXF1Q9UBU9 619 aaKnown RBP15.88■□□□□ 0.13
CLN3-222ENST00000566083 TPRP12270 2363 aaKnown RBP15.88■□□□□ 0.13
CLN3-222ENST00000566083 C2orf78A6NCI8 922 aa15.87■□□□□ 0.13
CLN3-222ENST00000566083 ZNF840PA6NDX5 716 aa15.87■□□□□ 0.13
CLN3-222ENST00000566083 F8VP50 259 aa15.87■□□□□ 0.13
CLN3-222ENST00000566083 PDXKO00764 312 aa15.87■□□□□ 0.13
CLN3-222ENST00000566083 CMA1P23946 247 aa15.87■□□□□ 0.13
CLN3-222ENST00000566083 MYL6P60660 151 aa15.87■□□□□ 0.13
CLN3-222ENST00000566083 SLC7A9P82251 487 aa15.87■□□□□ 0.13
CLN3-222ENST00000566083 SPEM2Q0P670 501 aa15.87■□□□□ 0.13
CLN3-222ENST00000566083 LPAL2Q16609 132 aa15.87■□□□□ 0.13
CLN3-222ENST00000566083 CCDC142Q17RM4 750 aa15.87■□□□□ 0.13
CLN3-222ENST00000566083 ZNF667Q5HYK9 610 aa15.87■□□□□ 0.13
CLN3-222ENST00000566083 SYT13Q7L8C5 426 aa15.87■□□□□ 0.13
CLN3-222ENST00000566083 CACNA2D4Q7Z3S7 1137 aa15.87■□□□□ 0.13
CLN3-222ENST00000566083 B3GALNT2Q8NCR0 500 aa15.87■□□□□ 0.13
CLN3-222ENST00000566083 PARD3BQ8TEW8 1205 aa15.87■□□□□ 0.13
CLN3-222ENST00000566083 GAB3Q8WWW8 586 aa15.87■□□□□ 0.13
CLN3-222ENST00000566083 TAF4BQ92750 862 aa15.87■□□□□ 0.13
CLN3-222ENST00000566083 SLC22A12Q96S37 553 aa15.87■□□□□ 0.13
CLN3-222ENST00000566083 XYLT2Q9H1B5 865 aa15.87■□□□□ 0.13
CLN3-222ENST00000566083 COMMD8Q9NX08 183 aa15.87■□□□□ 0.13
CLN3-222ENST00000566083 DCHS1Q96JQ0 3298 aa15.87■□□□□ 0.13
CLN3-222ENST00000566083 ANAPC1Q9H1A4 1944 aa15.86■□□□□ 0.13
CLN3-222ENST00000566083 RALGAPA1Q6GYQ0 2036 aa15.86■□□□□ 0.13
CLN3-222ENST00000566083 IKBKBO14920 756 aa15.86■□□□□ 0.13
CLN3-222ENST00000566083 RNF40O75150 1001 aa15.86■□□□□ 0.13
CLN3-222ENST00000566083 RPP40O75818 363 aaKnown RBP15.86■□□□□ 0.13
CLN3-222ENST00000566083 CLSTN1O94985 981 aa15.86■□□□□ 0.13
CLN3-222ENST00000566083 EGFP01133 1207 aa15.86■□□□□ 0.13
CLN3-222ENST00000566083 DNM1Q05193 864 aaKnown RBP15.86■□□□□ 0.13
CLN3-222ENST00000566083 DMWDQ09019 674 aa15.86■□□□□ 0.13
CLN3-222ENST00000566083 SGSM1Q2NKQ1 1148 aa15.86■□□□□ 0.13
CLN3-222ENST00000566083 ZNF699Q32M78 642 aa15.86■□□□□ 0.13
CLN3-222ENST00000566083 NUP93Q8N1F7 819 aa15.86■□□□□ 0.13
CLN3-222ENST00000566083 TTC16Q8NEE8 873 aa15.86■□□□□ 0.13
CLN3-222ENST00000566083 ZNF516Q92618 1163 aa15.86■□□□□ 0.13
CLN3-222ENST00000566083 PAGE5Q96GU1 130 aa15.86■□□□□ 0.13
CLN3-222ENST00000566083 DNAI2Q9GZS0 605 aa15.86■□□□□ 0.13
CLN3-222ENST00000566083 SEMA4GQ9NTN9 838 aa15.86■□□□□ 0.13
CLN3-222ENST00000566083 SERTAD1Q9UHV2 236 aa15.86■□□□□ 0.13
CLN3-222ENST00000566083 FRMD4BQ9Y2L6 1034 aa15.86■□□□□ 0.13
CLN3-222ENST00000566083 ATP6V1DQ9Y5K8 247 aa15.86■□□□□ 0.13
CLN3-222ENST00000566083 WNT6Q9Y6F9 365 aa15.86■□□□□ 0.13
CLN3-222ENST00000566083 ATG2BQ96BY7 2078 aa15.86■□□□□ 0.13
CLN3-222ENST00000566083 GREB1Q4ZG55 1949 aa15.86■□□□□ 0.13
CLN3-222ENST00000566083 CNOT1A5YKK6 2376 aaKnown RBP15.86■□□□□ 0.13
CLN3-222ENST00000566083 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.85■□□□□ 0.13
CLN3-222ENST00000566083 CCDC192P0DO97 292 aa15.85■□□□□ 0.13
CLN3-222ENST00000566083 YWHAQP27348 245 aa15.85■□□□□ 0.13
CLN3-222ENST00000566083 CASP1P29466 404 aa15.85■□□□□ 0.13
CLN3-222ENST00000566083 ATXN1P54253 815 aaKnown RBP15.85■□□□□ 0.13
CLN3-222ENST00000566083 KRT85P78386 507 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms