RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 INVSQ9Y283 1065 aa18.01■□□□□ 0.47
CLN3-211ENST00000564091 PCDHGA5Q9Y5G8 931 aa18.01■□□□□ 0.47
CLN3-211ENST00000564091 ZNF840PA6NDX5 716 aa18■□□□□ 0.47
CLN3-211ENST00000564091 F8VP50 259 aa18■□□□□ 0.47
CLN3-211ENST00000564091 SCAMP3O14828 347 aaKnown RBP18■□□□□ 0.47
CLN3-211ENST00000564091 CLIC2O15247 247 aa18■□□□□ 0.47
CLN3-211ENST00000564091 TGFB1I1O43294 461 aa18■□□□□ 0.47
CLN3-211ENST00000564091 STX6O43752 255 aa18■□□□□ 0.47
CLN3-211ENST00000564091 ABL1P00519 1130 aa18■□□□□ 0.47
CLN3-211ENST00000564091 TCF3P15923 654 aa18■□□□□ 0.47
CLN3-211ENST00000564091 TNNI1P19237 187 aa18■□□□□ 0.47
CLN3-211ENST00000564091 ANXA13P27216 316 aa18■□□□□ 0.47
CLN3-211ENST00000564091 GNL1P36915 607 aaPredicted RBP18■□□□□ 0.47
CLN3-211ENST00000564091 SEC13P55735 322 aa18■□□□□ 0.47
CLN3-211ENST00000564091 ASIC1P78348 528 aa18■□□□□ 0.47
CLN3-211ENST00000564091 MAPRE1Q15691 268 aaKnown RBP18■□□□□ 0.47
CLN3-211ENST00000564091 SNRNP35Q16560 246 aaKnown RBP18■□□□□ 0.47
CLN3-211ENST00000564091 C2orf27AQ580R0 203 aa18■□□□□ 0.47
CLN3-211ENST00000564091 EPM2AIP1Q7L775 607 aaPredicted RBP18■□□□□ 0.47
CLN3-211ENST00000564091 HS2ST1Q7LGA3 356 aa18■□□□□ 0.47
CLN3-211ENST00000564091 OR6B3Q8NGW1 331 aa18■□□□□ 0.47
CLN3-211ENST00000564091 ZNF507Q8TCN5 953 aa18■□□□□ 0.47
CLN3-211ENST00000564091 DDX1Q92499 740 aaKnown RBP18■□□□□ 0.47
CLN3-211ENST00000564091 ACDQ96AP0 544 aa18■□□□□ 0.47
CLN3-211ENST00000564091 CCDC127Q96BQ5 260 aa18■□□□□ 0.47
CLN3-211ENST00000564091 INTS4Q96HW7 963 aaKnown RBP18■□□□□ 0.47
CLN3-211ENST00000564091 LRRC27Q9C0I9 530 aa18■□□□□ 0.47
CLN3-211ENST00000564091 RNF38Q9H0F5 515 aa18■□□□□ 0.47
CLN3-211ENST00000564091 SNX25Q9H3E2 840 aa18■□□□□ 0.47
CLN3-211ENST00000564091 KIAA1586Q9HCI6 787 aa18■□□□□ 0.47
CLN3-211ENST00000564091 AGPAT3Q9NRZ7 376 aa18■□□□□ 0.47
CLN3-211ENST00000564091 EBF1Q9UH73 591 aa18■□□□□ 0.47
CLN3-211ENST00000564091 NUP210Q8TEM1 1887 aaPredicted RBP17.99■□□□□ 0.47
CLN3-211ENST00000564091 K7EQS6 105 aa17.99■□□□□ 0.47
CLN3-211ENST00000564091 SPTLC2O15270 562 aa17.99■□□□□ 0.47
CLN3-211ENST00000564091 NFATC1O95644 943 aa17.99■□□□□ 0.47
CLN3-211ENST00000564091 OPRD1P41143 372 aa17.99■□□□□ 0.47
CLN3-211ENST00000564091 CYP2J2P51589 502 aa17.99■□□□□ 0.47
CLN3-211ENST00000564091 DGKEP52429 567 aa17.99■□□□□ 0.47
CLN3-211ENST00000564091 CACNA2D1P54289 1103 aa17.99■□□□□ 0.47
CLN3-211ENST00000564091 CREB5Q02930 508 aa17.99■□□□□ 0.47
CLN3-211ENST00000564091 N4BP2L1Q5TBK1 243 aaPredicted RBP17.99■□□□□ 0.47
CLN3-211ENST00000564091 FILIP1Q7Z7B0 1213 aa17.99■□□□□ 0.47
CLN3-211ENST00000564091 NELFCDQ8IXH7 590 aa17.99■□□□□ 0.47
CLN3-211ENST00000564091 TSTD1Q8NFU3 115 aa17.99■□□□□ 0.47
CLN3-211ENST00000564091 USP33Q8TEY7 942 aa17.99■□□□□ 0.47
CLN3-211ENST00000564091 FNBP1Q96RU3 617 aa17.99■□□□□ 0.47
CLN3-211ENST00000564091 TTLL2Q9BWV7 592 aa17.99■□□□□ 0.47
CLN3-211ENST00000564091 DPEP3Q9H4B8 488 aa17.99■□□□□ 0.47
CLN3-211ENST00000564091 VPS45Q9NRW7 570 aa17.99■□□□□ 0.47
CLN3-211ENST00000564091 SMPD4Q9NXE4 827 aa17.99■□□□□ 0.47
CLN3-211ENST00000564091 ANK1P16157 1881 aa17.99■□□□□ 0.47
CLN3-211ENST00000564091 TRIM66O15016 1216 aa17.98■□□□□ 0.47
CLN3-211ENST00000564091 EIF3DO15371 548 aaKnown RBP eCLIP17.98■□□□□ 0.47
CLN3-211ENST00000564091 TACC1O75410 805 aa17.98■□□□□ 0.47
CLN3-211ENST00000564091 RHOBTB1O94844 696 aa17.98■□□□□ 0.47
CLN3-211ENST00000564091 GBP1P32455 592 aa17.98■□□□□ 0.47
CLN3-211ENST00000564091 PDE6CP51160 858 aa17.98■□□□□ 0.47
CLN3-211ENST00000564091 CYP24A1Q07973 514 aa17.98■□□□□ 0.47
CLN3-211ENST00000564091 TAF10Q12962 218 aa17.98■□□□□ 0.47
CLN3-211ENST00000564091 ELF2Q15723 593 aa17.98■□□□□ 0.47
CLN3-211ENST00000564091 GAB4Q2WGN9 574 aa17.98■□□□□ 0.47
CLN3-211ENST00000564091 WDR72Q3MJ13 1102 aa17.98■□□□□ 0.47
CLN3-211ENST00000564091 FAM26FQ5R3K3 315 aa17.98■□□□□ 0.47
CLN3-211ENST00000564091 CCDC33Q8N5R6 958 aa17.98■□□□□ 0.47
CLN3-211ENST00000564091 SCFD1Q8WVM8 642 aa17.98■□□□□ 0.47
CLN3-211ENST00000564091 CHAMP1Q96JM3 812 aa17.98■□□□□ 0.47
CLN3-211ENST00000564091 C8orf48Q96LL4 319 aa17.98■□□□□ 0.47
CLN3-211ENST00000564091 CEP295NLQ96MC4 621 aa17.98■□□□□ 0.47
CLN3-211ENST00000564091 CGRRF1Q99675 332 aa17.98■□□□□ 0.47
CLN3-211ENST00000564091 TPSD1Q9BZJ3 242 aa17.98■□□□□ 0.47
CLN3-211ENST00000564091 ZNF518BQ9C0D4 1074 aa17.98■□□□□ 0.47
CLN3-211ENST00000564091 TMEM30AQ9NV96 361 aa17.98■□□□□ 0.47
CLN3-211ENST00000564091 CPQQ9Y646 472 aa17.98■□□□□ 0.47
CLN3-211ENST00000564091 CLDN5O00501 218 aa17.97■□□□□ 0.47
CLN3-211ENST00000564091 CAVIN2O95810 425 aa17.97■□□□□ 0.47
CLN3-211ENST00000564091 CYP17A1P05093 508 aa17.97■□□□□ 0.47
CLN3-211ENST00000564091 PFKLP17858 780 aa17.97■□□□□ 0.47
CLN3-211ENST00000564091 PTPN1P18031 435 aaKnown RBP17.97■□□□□ 0.47
CLN3-211ENST00000564091 CASP1P29466 404 aa17.97■□□□□ 0.47
CLN3-211ENST00000564091 SLC6A11P48066 632 aa17.97■□□□□ 0.47
CLN3-211ENST00000564091 NOP14P78316 857 aaKnown RBP17.97■□□□□ 0.47
CLN3-211ENST00000564091 SLC7A9P82251 487 aa17.97■□□□□ 0.47
CLN3-211ENST00000564091 AMPD3Q01432 767 aa17.97■□□□□ 0.47
CLN3-211ENST00000564091 MESP2Q0VG99 397 aa17.97■□□□□ 0.47
CLN3-211ENST00000564091 IFRD2Q12894 506 aaPredicted RBP17.97■□□□□ 0.47
CLN3-211ENST00000564091 PSMD6Q15008 389 aa17.97■□□□□ 0.47
CLN3-211ENST00000564091 ST3GAL2Q16842 350 aa17.97■□□□□ 0.47
CLN3-211ENST00000564091 RNF43Q68DV7 783 aa17.97■□□□□ 0.47
CLN3-211ENST00000564091 ANO7Q6IWH7 933 aa17.97■□□□□ 0.47
CLN3-211ENST00000564091 SHC4Q6S5L8 630 aa17.97■□□□□ 0.47
CLN3-211ENST00000564091 SFTPA1Q8IWL2 248 aa17.97■□□□□ 0.47
CLN3-211ENST00000564091 ADGRG2Q8IZP9 1017 aa17.97■□□□□ 0.47
CLN3-211ENST00000564091 IQUBQ8NA54 791 aa17.97■□□□□ 0.47
CLN3-211ENST00000564091 ZNF516Q92618 1163 aa17.97■□□□□ 0.47
CLN3-211ENST00000564091 GZF1Q9H116 711 aaPredicted RBP17.97■□□□□ 0.47
CLN3-211ENST00000564091 BLZF1Q9H2G9 400 aa17.97■□□□□ 0.47
CLN3-211ENST00000564091 CUEDC2Q9H467 287 aa17.97■□□□□ 0.47
CLN3-211ENST00000564091 EHD2Q9NZN4 543 aa17.97■□□□□ 0.47
CLN3-211ENST00000564091 PPP6R2O75170 966 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms