RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 F8VP50 259 aa17.29■□□□□ 0.36
SNX1-213ENST00000561026 ACTN4O43707 911 aaKnown RBP17.29■□□□□ 0.36
SNX1-213ENST00000561026 ATG13O75143 517 aa17.29■□□□□ 0.36
SNX1-213ENST00000561026 RETP07949 1114 aa17.29■□□□□ 0.36
SNX1-213ENST00000561026 TCF3P15923 654 aa17.29■□□□□ 0.36
SNX1-213ENST00000561026 PFKLP17858 780 aa17.29■□□□□ 0.36
SNX1-213ENST00000561026 HOXC13P31276 330 aa17.29■□□□□ 0.36
SNX1-213ENST00000561026 GJA4P35212 333 aa17.29■□□□□ 0.36
SNX1-213ENST00000561026 CASP4P49662 377 aa17.29■□□□□ 0.36
SNX1-213ENST00000561026 PDE6CP51160 858 aa17.29■□□□□ 0.36
SNX1-213ENST00000561026 NOP14P78316 857 aaKnown RBP17.29■□□□□ 0.36
SNX1-213ENST00000561026 LMNB2Q03252 620 aa17.29■□□□□ 0.36
SNX1-213ENST00000561026 STK4Q13043 487 aa17.29■□□□□ 0.36
SNX1-213ENST00000561026 USP4Q13107 963 aa17.29■□□□□ 0.36
SNX1-213ENST00000561026 CPA6Q8N4T0 437 aa17.29■□□□□ 0.36
SNX1-213ENST00000561026 PLEKHO2Q8TD55 490 aa17.29■□□□□ 0.36
SNX1-213ENST00000561026 SH3RF2Q8TEC5 729 aa17.29■□□□□ 0.36
SNX1-213ENST00000561026 TMEM174Q8WUU8 243 aa17.29■□□□□ 0.36
SNX1-213ENST00000561026 ATP2A3Q93084 1043 aa17.29■□□□□ 0.36
SNX1-213ENST00000561026 SYAP1Q96A49 352 aaPredicted RBP17.29■□□□□ 0.36
SNX1-213ENST00000561026 C8orf48Q96LL4 319 aa17.29■□□□□ 0.36
SNX1-213ENST00000561026 P2RY13Q9BPV8 354 aa17.29■□□□□ 0.36
SNX1-213ENST00000561026 TTLL2Q9BWV7 592 aa17.29■□□□□ 0.36
SNX1-213ENST00000561026 DPEP3Q9H4B8 488 aa17.29■□□□□ 0.36
SNX1-213ENST00000561026 PARD6AQ9NPB6 346 aa17.29■□□□□ 0.36
SNX1-213ENST00000561026 TRPM5Q9NZQ8 1165 aa17.29■□□□□ 0.36
SNX1-213ENST00000561026 NXF1Q9UBU9 619 aaKnown RBP17.29■□□□□ 0.36
SNX1-213ENST00000561026 USP18Q9UMW8 372 aa17.29■□□□□ 0.36
SNX1-213ENST00000561026 WNT6Q9Y6F9 365 aa17.29■□□□□ 0.36
SNX1-213ENST00000561026 ZNF840PA6NDX5 716 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 A8MXQ7 604 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 PRR5-ARHGAP8B1AHC4 643 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 PHACTR2O75167 634 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 EGFP01133 1207 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 DRD1P21728 446 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 SDHBP21912 280 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 CMA1P23946 247 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 PPP3CCP48454 512 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 IFNAR2P48551 515 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 CLDN10P78369 228 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 ARHGAP8P85298 464 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 PSMD2Q13200 908 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 EML3Q32P44 896 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 NAIF1Q69YI7 327 aaPredicted RBP17.28■□□□□ 0.36
SNX1-213ENST00000561026 WDR5BQ86VZ2 330 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 KIAA0895Q8NCT3 520 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 PARD3BQ8TEW8 1205 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 EXOC4Q96A65 974 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 VRTNQ9H8Y1 702 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 DMAC2Q9NW81 257 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 AP3M2P53677 418 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 CACNA2D1P54289 1103 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 ZXDBP98169 803 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 SPEM2Q0P670 501 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 KMT5BQ4FZB7 885 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 FBXO43Q4G163 708 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 TDRD10Q5VZ19 366 aaKnown RBP17.28■□□□□ 0.36
SNX1-213ENST00000561026 SLC9A9Q8IVB4 645 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 B3GALNT2Q8NCR0 500 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 B3GNT5Q9BYG0 378 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 ELOVL4Q9GZR5 314 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 LINC00597Q9H2U6 94 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 EXOC1Q9NV70 894 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 TMEM30AQ9NV96 361 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 USP25Q9UHP3 1055 aa17.28■□□□□ 0.36
SNX1-213ENST00000561026 GREB1Q4ZG55 1949 aa17.27■□□□□ 0.36
SNX1-213ENST00000561026 CCDC163A0A0D9SF12 145 aa17.27■□□□□ 0.35
SNX1-213ENST00000561026 A0A1B0GVL5 298 aa17.27■□□□□ 0.35
SNX1-213ENST00000561026 LRRIQ3A6PVS8 624 aaPredicted RBP17.27■□□□□ 0.35
SNX1-213ENST00000561026 LRP3O75074 770 aa17.27■□□□□ 0.35
SNX1-213ENST00000561026 RNF40O75150 1001 aa17.27■□□□□ 0.35
SNX1-213ENST00000561026 C4BPAP04003 597 aaKnown RBP17.27■□□□□ 0.35
SNX1-213ENST00000561026 PFKFB1P16118 471 aa17.27■□□□□ 0.35
SNX1-213ENST00000561026 NR1H3Q13133 447 aa17.27■□□□□ 0.35
SNX1-213ENST00000561026 BIRC3Q13489 604 aa17.27■□□□□ 0.35
SNX1-213ENST00000561026 ZNF518BQ9C0D4 1074 aa17.27■□□□□ 0.35
SNX1-213ENST00000561026 RNF38Q9H0F5 515 aa17.27■□□□□ 0.35
SNX1-213ENST00000561026 KCTD10Q9H3F6 313 aa17.27■□□□□ 0.35
SNX1-213ENST00000561026 SLC8A2Q9UPR5 921 aa17.27■□□□□ 0.35
SNX1-213ENST00000561026 ANAPC1Q9H1A4 1944 aa17.26■□□□□ 0.35
SNX1-213ENST00000561026 MED19A0JLT2 244 aaPredicted RBP17.26■□□□□ 0.35
SNX1-213ENST00000561026 LEFTY2O00292 366 aa17.26■□□□□ 0.35
SNX1-213ENST00000561026 CLDN5O00501 218 aa17.26■□□□□ 0.35
SNX1-213ENST00000561026 PDXKO00764 312 aa17.26■□□□□ 0.35
SNX1-213ENST00000561026 OLFM2O95897 454 aa17.26■□□□□ 0.35
SNX1-213ENST00000561026 MYL1P05976 194 aa17.26■□□□□ 0.35
SNX1-213ENST00000561026 PXNP49023 591 aaPredicted RBP17.26■□□□□ 0.35
SNX1-213ENST00000561026 CDH8P55286 799 aa17.26■□□□□ 0.35
SNX1-213ENST00000561026 SLC7A9P82251 487 aa17.26■□□□□ 0.35
SNX1-213ENST00000561026 TAF10Q12962 218 aa17.26■□□□□ 0.35
SNX1-213ENST00000561026 NCOA4Q13772 614 aa17.26■□□□□ 0.35
SNX1-213ENST00000561026 ZNF699Q32M78 642 aa17.26■□□□□ 0.35
SNX1-213ENST00000561026 CEP68Q76N32 757 aa17.26■□□□□ 0.35
SNX1-213ENST00000561026 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.26■□□□□ 0.35
SNX1-213ENST00000561026 KIAA1958Q8N8K9 716 aa17.26■□□□□ 0.35
SNX1-213ENST00000561026 CD101Q93033 1021 aa17.26■□□□□ 0.35
SNX1-213ENST00000561026 SMYD3Q9H7B4 428 aa17.26■□□□□ 0.35
SNX1-213ENST00000561026 HPSEQ9Y251 543 aa17.26■□□□□ 0.35
SNX1-213ENST00000561026 NCOR2Q9Y618 2525 aa17.25■□□□□ 0.35
SNX1-213ENST00000561026 PTPRDP23468 1912 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms