RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 DDTLA6NHG4 134 aaPredicted RBP7.4□□□□□ -1.23
USP3-210ENST00000559192 WFS1O76024 890 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 PDGFRAP16234 1089 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 ELK3P41970 407 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 ST13P50502 369 aaKnown RBP7.4□□□□□ -1.23
USP3-210ENST00000559192 RPL10AP62906 217 aaKnown RBP7.4□□□□□ -1.23
USP3-210ENST00000559192 POU5F1BQ06416 359 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 RFWD3Q6PCD5 774 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 SV2AQ7L0J3 742 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 EMC1Q8N766 993 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 ZNF384Q8TF68 577 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 FAM210AQ96ND0 272 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 CCT7Q99832 543 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 FHDC1Q9C0D6 1143 aaPredicted RBP7.4□□□□□ -1.23
USP3-210ENST00000559192 LRMDAQ9H2I8 198 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 RNF146Q9NTX7 359 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 ZDHHC18Q9NUE0 388 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 GPATCH2LQ9NWQ4 482 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 NKX1-2Q9UD57 310 aaPredicted RBP7.4□□□□□ -1.23
USP3-210ENST00000559192 ZNF212Q9UDV6 495 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 R3HDM2Q9Y2K5 976 aaKnown RBP7.4□□□□□ -1.23
USP3-210ENST00000559192 LAMA4Q16363 1823 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 FRMPD4Q14CM0 1322 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 C4AP0C0L4 1744 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 C4BP0C0L5 1744 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 KBTBD13C9JR72 458 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 E9PBE3 544 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 KLHL41O60662 606 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 SMNDC1O75940 238 aaKnown RBP eCLIP7.4□□□□□ -1.234e-9■■■□□ 17.4
USP3-210ENST00000559192 LCP1P13796 627 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 RAG1P15918 1043 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 ADORA2BP29275 332 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 SERPINB1P30740 379 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 VCPP55072 806 aaKnown RBP7.4□□□□□ -1.23
USP3-210ENST00000559192 PRKCEQ02156 737 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 EMC2Q15006 297 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 ZFPM1Q8IX07 1006 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 SP8Q8IXZ3 490 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 ACER1Q8TDN7 264 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 APOPT1Q96IL0 206 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 TAAR1Q96RJ0 339 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 RIT2Q99578 217 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 SAR1AQ9NR31 198 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 POLE3Q9NRF9 147 aa7.4□□□□□ -1.23
USP3-210ENST00000559192 HERC5Q9UII4 1024 aaKnown RBP7.4□□□□□ -1.23
USP3-210ENST00000559192 LIN7AO14910 233 aaPredicted RBP7.39□□□□□ -1.23
USP3-210ENST00000559192 USP1O94782 785 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 PDK4Q16654 411 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 SLC45A4Q5BKX6 768 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 FAM47CQ5HY64 1035 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 TMC5Q6UXY8 1006 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 TRIM67Q6ZTA4 783 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP7.39□□□□□ -1.233e-6■■■■■ 29
USP3-210ENST00000559192 ETNPPLQ8TBG4 499 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 SRPK1Q96SB4 655 aaKnown RBP7.39□□□□□ -1.23
USP3-210ENST00000559192 KCNK16Q96T55 309 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 TIPINQ9BVW5 301 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 PARVBQ9HBI1 364 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 JPH1Q9HDC5 661 aaPredicted RBP7.39□□□□□ -1.23
USP3-210ENST00000559192 SIX2Q9NPC8 291 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 TMEM59LQ9UK28 342 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 RNF103-CHMP3A0A140T963 221 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 A8MXQ7 604 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 SERPINB10P48595 397 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 NME3Q13232 169 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 BLMHQ13867 455 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 UBAP2LQ14157 1087 aaKnown RBP7.39□□□□□ -1.23
USP3-210ENST00000559192 SURF1Q15526 300 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 TBCCQ15814 346 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 INAQ16352 499 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 MAPK6Q16659 721 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 PDPK2PQ6A1A2 396 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 C16orf89Q6UX73 402 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 DENND5BQ6ZUT9 1274 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 TMPRSS6Q8IU80 811 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 CYP4X1Q8N118 509 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 USP13Q92995 863 aaPredicted RBP7.39□□□□□ -1.23
USP3-210ENST00000559192 CDHR1Q96JP9 859 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 SNX25Q9H3E2 840 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 PIH1D1Q9NWS0 290 aaKnown RBP7.39□□□□□ -1.23
USP3-210ENST00000559192 SLC17A7Q9P2U7 560 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 ZC3H4Q9UPT8 1303 aaKnown RBP7.39□□□□□ -1.23
USP3-210ENST00000559192 MEIS2O14770 477 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 HLA-DPA1P20036 260 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 MAP4P27816 1152 aaKnown RBP7.39□□□□□ -1.23
USP3-210ENST00000559192 DUOXA2Q1HG44 320 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 SHROOM1Q2M3G4 852 aaPredicted RBP7.39□□□□□ -1.23
USP3-210ENST00000559192 TKFCQ3LXA3 575 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 GADL1Q6ZQY3 521 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 CCDC80Q76M96 950 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 DEFB107AQ8IZN7 70 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 SIX5Q8N196 739 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 MRPL4Q9BYD3 311 aaKnown RBP7.39□□□□□ -1.23
USP3-210ENST00000559192 GID8Q9NWU2 228 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 PAK5Q9P286 719 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 M0R2N6 131 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 GRK2P25098 689 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 SLC1A5Q15758 541 aa7.39□□□□□ -1.23
USP3-210ENST00000559192 TRMT5Q32P41 509 aaKnown RBP7.39□□□□□ -1.23
USP3-210ENST00000559192 RIPOR1Q6ZS17 1223 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms