RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 CPLX4Q7Z7G2 160 aa11.15□□□□□ -0.62
CUX1-217ENST00000558836 ZNF467Q7Z7K2 595 aaPredicted RBP11.15□□□□□ -0.62
CUX1-217ENST00000558836 TLK2Q86UE8 772 aa11.15□□□□□ -0.62
CUX1-217ENST00000558836 TTC30AQ86WT1 665 aa11.15□□□□□ -0.62
CUX1-217ENST00000558836 XPO6Q96QU8 1125 aaKnown RBP11.15□□□□□ -0.62
CUX1-217ENST00000558836 GCOM2Q9BZD3 368 aaPredicted RBP11.15□□□□□ -0.62
CUX1-217ENST00000558836 NGRNQ9NPE2 291 aaKnown RBP11.15□□□□□ -0.62
CUX1-217ENST00000558836 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.15□□□□□ -0.62
CUX1-217ENST00000558836 C2CD2Q9Y426 696 aa11.15□□□□□ -0.62
CUX1-217ENST00000558836 ATP2C2O75185 946 aa11.15□□□□□ -0.62
CUX1-217ENST00000558836 ADORA2BP29275 332 aa11.15□□□□□ -0.62
CUX1-217ENST00000558836 GRM5P41594 1212 aa11.15□□□□□ -0.62
CUX1-217ENST00000558836 HUNKP57058 714 aa11.15□□□□□ -0.62
CUX1-217ENST00000558836 HADHQ16836 314 aaKnown RBP11.15□□□□□ -0.62
CUX1-217ENST00000558836 RNF187Q5TA31 235 aaPredicted RBP11.15□□□□□ -0.62
CUX1-217ENST00000558836 ANKRD22Q5VYY1 191 aa11.15□□□□□ -0.62
CUX1-217ENST00000558836 UNC45BQ8IWX7 931 aa11.15□□□□□ -0.62
CUX1-217ENST00000558836 ZBED8Q8IZ13 594 aa11.15□□□□□ -0.62
CUX1-217ENST00000558836 NIPA2Q8N8Q9 360 aa11.15□□□□□ -0.62
CUX1-217ENST00000558836 FAM71DQ8N9W8 422 aa11.15□□□□□ -0.62
CUX1-217ENST00000558836 INTS9Q9NV88 658 aaKnown RBP11.15□□□□□ -0.62
CUX1-217ENST00000558836 SLC5A4Q9NY91 659 aa11.15□□□□□ -0.62
CUX1-217ENST00000558836 DDX56Q9NY93 547 aaKnown RBP11.15□□□□□ -0.62
CUX1-217ENST00000558836 DDX20Q9UHI6 824 aaKnown RBP11.15□□□□□ -0.62
CUX1-217ENST00000558836 COL1A2P08123 1366 aa11.14□□□□□ -0.63
CUX1-217ENST00000558836 POC1B-GALNT4F8VUJ3 575 aa11.14□□□□□ -0.63
CUX1-217ENST00000558836 HMGCRP04035 888 aa11.14□□□□□ -0.63
CUX1-217ENST00000558836 MYCNP04198 464 aaPredicted RBP11.14□□□□□ -0.63
CUX1-217ENST00000558836 KRT7P08729 469 aa11.14□□□□□ -0.63
CUX1-217ENST00000558836 CCDC130P13994 396 aa11.14□□□□□ -0.63
CUX1-217ENST00000558836 ATXN1P54253 815 aaKnown RBP11.14□□□□□ -0.63
CUX1-217ENST00000558836 CDH6P55285 790 aa11.14□□□□□ -0.63
CUX1-217ENST00000558836 ZNF268Q14587 947 aaPredicted RBP11.14□□□□□ -0.63
CUX1-217ENST00000558836 ZC3H12AQ5D1E8 599 aaKnown RBP11.14□□□□□ -0.63
CUX1-217ENST00000558836 ERMARDQ5T6L9 678 aa11.14□□□□□ -0.63
CUX1-217ENST00000558836 SLC27A1Q6PCB7 646 aa11.14□□□□□ -0.63
CUX1-217ENST00000558836 NDRG1Q92597 394 aaKnown RBP11.14□□□□□ -0.63
CUX1-217ENST00000558836 MCRS1Q96EZ8 462 aa11.14□□□□□ -0.63
CUX1-217ENST00000558836 CYP3A43Q9HB55 503 aa11.14□□□□□ -0.63
CUX1-217ENST00000558836 TCRBV7S3A2A0A539 114 aa11.14□□□□□ -0.63
CUX1-217ENST00000558836 DNALI1O14645 258 aaPredicted RBP11.14□□□□□ -0.63
CUX1-217ENST00000558836 SPTLC1O15269 473 aa11.14□□□□□ -0.63
CUX1-217ENST00000558836 GABBR2O75899 941 aa11.14□□□□□ -0.63
CUX1-217ENST00000558836 TRUB2O95900 331 aaKnown RBP11.14□□□□□ -0.63
CUX1-217ENST00000558836 AGTP01019 485 aa11.14□□□□□ -0.63
CUX1-217ENST00000558836 MPP2Q14168 576 aa11.14□□□□□ -0.63
CUX1-217ENST00000558836 C1orf228Q6PIY5 440 aa11.14□□□□□ -0.63
CUX1-217ENST00000558836 SRRM1Q8IYB3 904 aaKnown RBP11.14□□□□□ -0.63
CUX1-217ENST00000558836 CCDC13Q8IYE1 715 aa11.14□□□□□ -0.63
CUX1-217ENST00000558836 GDAP1Q8TB36 358 aa11.14□□□□□ -0.63
CUX1-217ENST00000558836 ATXN2LQ8WWM7 1075 aaKnown RBP11.14□□□□□ -0.63
CUX1-217ENST00000558836 VRTNQ9H8Y1 702 aa11.14□□□□□ -0.63
CUX1-217ENST00000558836 TPX2Q9ULW0 747 aaKnown RBP11.14□□□□□ -0.63
CUX1-217ENST00000558836 GNEQ9Y223 722 aaKnown RBP11.14□□□□□ -0.63
CUX1-217ENST00000558836 A6NJR5 290 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 A8MXQ7 604 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 RABGGTBP53611 331 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 CORO7P57737 925 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 INCA1Q0VD86 236 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 MFSD10Q14728 455 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 SOWAHAQ2M3V2 549 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 ZNF410Q86VK4 478 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 SNX27Q96L92 541 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 VPS37BQ9H9H4 285 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 NAALADL1Q9UQQ1 740 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 SLC45A1Q9Y2W3 748 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 TMEM120BA0PK00 339 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 MEIS3P2A8K0S8 358 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 FGFR1P11362 822 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 LCP1P13796 627 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 DARSP14868 501 aaKnown RBP11.13□□□□□ -0.63
CUX1-217ENST00000558836 GPD1P21695 349 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 SOX4Q06945 474 aaPredicted RBP11.13□□□□□ -0.63
CUX1-217ENST00000558836 PDIA2Q13087 525 aaKnown RBP11.13□□□□□ -0.63
CUX1-217ENST00000558836 MSS51Q4VC12 460 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 PPP6R3Q5H9R7 873 aaPredicted RBP11.13□□□□□ -0.63
CUX1-217ENST00000558836 NOTUMQ6P988 496 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 LCLAT1Q6UWP7 414 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 ZCCHC9Q8N567 271 aaKnown RBP11.13□□□□□ -0.63
CUX1-217ENST00000558836 NETO2Q8NC67 525 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 SLC35B2Q8TB61 432 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 SPATA18Q8TC71 538 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 RSAD2Q8WXG1 361 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 KIF9Q9HAQ2 790 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 HEY1Q9Y5J3 304 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 NRCAMQ92823 1304 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 C2CD4BA6NLJ0 364 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 F2P00734 622 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 VIMP08670 466 aaKnown RBP11.13□□□□□ -0.63
CUX1-217ENST00000558836 GABRB2P47870 512 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 CTCFP49711 727 aaPredicted RBP11.13□□□□□ -0.63
CUX1-217ENST00000558836 ZNF143P52747 638 aaPredicted RBP11.13□□□□□ -0.63
CUX1-217ENST00000558836 COPS2P61201 443 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 CAV1Q03135 178 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 LMNB2Q03252 620 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 TMED2Q15363 201 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 TAF1CQ15572 869 aaPredicted RBP11.13□□□□□ -0.63
CUX1-217ENST00000558836 CA9Q16790 459 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 CCDC14Q49A88 953 aa11.13□□□□□ -0.63
CUX1-217ENST00000558836 POLNQ7Z5Q5 900 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms