RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 IFT122Q9HBG6 1241 aa14.39□□□□□ -0.11
SHMT2-226ENST00000556825 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.39□□□□□ -0.11
SHMT2-226ENST00000556825 MAP3K2Q9Y2U5 619 aa14.39□□□□□ -0.11
SHMT2-226ENST00000556825 NOSIPQ9Y314 301 aaKnown RBP14.39□□□□□ -0.11
SHMT2-226ENST00000556825 GIMAP1-GIMAP5A0A087WTJ2 511 aa14.39□□□□□ -0.11
SHMT2-226ENST00000556825 CAPN14A8MX76 684 aa14.39□□□□□ -0.11
SHMT2-226ENST00000556825 KLHL41O60662 606 aa14.39□□□□□ -0.11
SHMT2-226ENST00000556825 TPTEP56180 551 aa14.39□□□□□ -0.11
SHMT2-226ENST00000556825 CALCOCO2Q13137 446 aa14.39□□□□□ -0.11
SHMT2-226ENST00000556825 SLC1A5Q15758 541 aa14.39□□□□□ -0.11
SHMT2-226ENST00000556825 EARS2Q5JPH6 523 aaKnown RBP14.39□□□□□ -0.11
SHMT2-226ENST00000556825 SCARA3Q6AZY7 606 aa14.39□□□□□ -0.11
SHMT2-226ENST00000556825 GIMAP5Q96F15 307 aa14.39□□□□□ -0.11
SHMT2-226ENST00000556825 OXNAD1Q96HP4 312 aaPredicted RBP14.39□□□□□ -0.11
SHMT2-226ENST00000556825 C7orf26Q96N11 449 aa14.39□□□□□ -0.11
SHMT2-226ENST00000556825 HERC2P3Q9BVR0 1158 aa14.39□□□□□ -0.11
SHMT2-226ENST00000556825 COPRSQ9NQ92 184 aa14.39□□□□□ -0.11
SHMT2-226ENST00000556825 DISC1Q9NRI5 854 aa14.39□□□□□ -0.11
SHMT2-226ENST00000556825 PCSK1NQ9UHG2 260 aa14.39□□□□□ -0.11
SHMT2-226ENST00000556825 CFL2Q9Y281 166 aa14.39□□□□□ -0.11
SHMT2-226ENST00000556825 KDM3BQ7LBC6 1761 aa14.39□□□□□ -0.11
SHMT2-226ENST00000556825 FAM172BPA6NC97 362 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 FADS2P1A8MWK0 482 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 ANKRD63C9JTQ0 380 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 H7C0C1 242 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 HOXC11O43248 304 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-226ENST00000556825 CSPG5O95196 566 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 DDX58O95786 925 aaKnown RBP14.38□□□□□ -0.11
SHMT2-226ENST00000556825 RAG1P15918 1043 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 PIK3CAP42336 1068 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 OVGP1Q12889 678 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 HIC1Q14526 733 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 STAT4Q14765 748 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 TTC38Q5R3I4 469 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 PPP4R4Q6NUP7 873 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 SLC15A4Q8N697 577 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 GLMNQ92990 594 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 LY9Q9HBG7 655 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 WDR6Q9NNW5 1121 aaKnown RBP14.38□□□□□ -0.11
SHMT2-226ENST00000556825 PCDH12Q9NPG4 1184 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 ABI2Q9NYB9 513 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-226ENST00000556825 TAGLN3Q9UI15 199 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 CORINQ9Y5Q5 1042 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 LMO7Q8WWI1 1683 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 ANXA1P04083 346 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 ENO1P06733 434 aaKnown RBP14.38□□□□□ -0.11
SHMT2-226ENST00000556825 RPA3P35244 121 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-226ENST00000556825 HSPA13P48723 471 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 PTK2Q05397 1052 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 RAPGEF1Q13905 1077 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 TMED2Q15363 201 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 IL17AQ16552 155 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 SLX4IPQ5VYV7 408 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 TMC5Q6UXY8 1006 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 GLRX5Q86SX6 157 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 TTC7BQ86TV6 843 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 HSPH1Q92598 858 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 SGCDQ92629 289 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 ALPK1Q96QP1 1244 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 SLC2A11Q9BYW1 496 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 CLPBQ9H078 707 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 RIC8BQ9NVN3 520 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 MOCS1Q9NZB8 636 aa14.38□□□□□ -0.11
SHMT2-226ENST00000556825 PXDNQ92626 1479 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 THAP12O43422 761 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 SH3BP5O60239 455 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 CCNT2O60583 730 aaKnown RBP14.37□□□□□ -0.11
SHMT2-226ENST00000556825 TGDSO95455 350 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 MRPS9P82933 396 aaKnown RBP14.37□□□□□ -0.11
SHMT2-226ENST00000556825 ARID5AQ03989 594 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 GBE1Q04446 702 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 ZBED5Q49AG3 693 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 TTC27Q6P3X3 843 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 IDO2Q6ZQW0 420 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 DGLUCYQ7Z3D6 616 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 PRELID2Q8N945 189 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 METTL22Q9BUU2 404 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-226ENST00000556825 TRABDQ9H4I3 376 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 ARMCX1Q9P291 453 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 NAGPAQ9UK23 515 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 PCDHB4Q9Y5E5 795 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 NID2Q14112 1375 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 CCRL2O00421 344 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 XPO1O14980 1071 aaKnown RBP14.37□□□□□ -0.11
SHMT2-226ENST00000556825 ZNF254O75437 659 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 ATE1O95260 518 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 BMP10O95393 424 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 PLEKHA8P1O95397 391 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 HOXB7P09629 217 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 CFL1P23528 166 aaKnown RBP14.37□□□□□ -0.11
SHMT2-226ENST00000556825 CTNNA2P26232 953 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 ZAP70P43403 619 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 PHC1P78364 1004 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 COG2Q14746 738 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 TRIP13Q15645 432 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-226ENST00000556825 C1orf141Q5JVX7 400 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 RABGAP1LQ5R372 815 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 SAMD14Q8IZD0 417 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-226ENST00000556825 CCDC89Q8N998 374 aa14.37□□□□□ -0.11
SHMT2-226ENST00000556825 BBOF1Q8ND07 529 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms