RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 PCDHGA3Q9Y5H0 932 aa4.33□□□□□ -1.72
SCFD1-218ENST00000556256 CADPSQ9ULU8 1353 aa4.32□□□□□ -1.72
SCFD1-218ENST00000556256 EME2A4GXA9 379 aaPredicted RBP4.32□□□□□ -1.72
SCFD1-218ENST00000556256 T-ENOLP0DO92 83 aa4.32□□□□□ -1.72
SCFD1-218ENST00000556256 IARSP41252 1262 aaKnown RBP4.32□□□□□ -1.72
SCFD1-218ENST00000556256 E2F2Q14209 437 aa4.32□□□□□ -1.72
SCFD1-218ENST00000556256 IQCB1Q15051 598 aa4.32□□□□□ -1.72
SCFD1-218ENST00000556256 ZNF549Q6P9A3 640 aa4.32□□□□□ -1.72
SCFD1-218ENST00000556256 LVRNQ6Q4G3 990 aa4.32□□□□□ -1.72
SCFD1-218ENST00000556256 DEF8Q6ZN54 512 aa4.32□□□□□ -1.72
SCFD1-218ENST00000556256 ADHFE1Q8IWW8 467 aa4.32□□□□□ -1.72
SCFD1-218ENST00000556256 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.32□□□□□ -1.72
SCFD1-218ENST00000556256 PELI3Q8N2H9 469 aa4.32□□□□□ -1.72
SCFD1-218ENST00000556256 OSR1Q8TAX0 266 aaPredicted RBP4.32□□□□□ -1.72
SCFD1-218ENST00000556256 SOCS4Q8WXH5 440 aa4.32□□□□□ -1.72
SCFD1-218ENST00000556256 MAP4K1Q92918 833 aa4.32□□□□□ -1.72
SCFD1-218ENST00000556256 FAXDC2Q96IV6 333 aa4.32□□□□□ -1.72
SCFD1-218ENST00000556256 PUS7Q96PZ0 661 aaKnown RBP4.32□□□□□ -1.72
SCFD1-218ENST00000556256 FYTTD1Q96QD9 318 aaKnown RBP4.32□□□□□ -1.72
SCFD1-218ENST00000556256 MMS19Q96T76 1030 aa4.32□□□□□ -1.72
SCFD1-218ENST00000556256 SLCO5A1Q9H2Y9 848 aa4.32□□□□□ -1.72
SCFD1-218ENST00000556256 PHLDB1Q86UU1 1377 aa4.31□□□□□ -1.72
SCFD1-218ENST00000556256 B4DGG1 531 aa4.31□□□□□ -1.72
SCFD1-218ENST00000556256 FHL3Q13643 280 aa4.31□□□□□ -1.72
SCFD1-218ENST00000556256 COLCA1Q6ZS62 124 aa4.31□□□□□ -1.72
SCFD1-218ENST00000556256 DCP1BQ8IZD4 617 aaKnown RBP4.31□□□□□ -1.72
SCFD1-218ENST00000556256 CPA6Q8N4T0 437 aa4.31□□□□□ -1.72
SCFD1-218ENST00000556256 CCDC17Q96LX7 622 aa4.31□□□□□ -1.72
SCFD1-218ENST00000556256 FAM234AQ9H0X4 552 aa4.31□□□□□ -1.72
SCFD1-218ENST00000556256 NDRG4Q9ULP0 352 aaKnown RBP4.31□□□□□ -1.72
SCFD1-218ENST00000556256 POLHQ9Y253 713 aa4.31□□□□□ -1.72
SCFD1-218ENST00000556256 TMA7Q9Y2S6 64 aaKnown RBP4.31□□□□□ -1.72
SCFD1-218ENST00000556256 HS3ST3B1Q9Y662 390 aa4.31□□□□□ -1.72
SCFD1-218ENST00000556256 C4orf47A7E2U8 309 aa4.3□□□□□ -1.72
SCFD1-218ENST00000556256 BTBD19C9JJ37 291 aa4.3□□□□□ -1.72
SCFD1-218ENST00000556256 AP4M1O00189 453 aa4.3□□□□□ -1.72
SCFD1-218ENST00000556256 GCATO75600 419 aa4.3□□□□□ -1.72
SCFD1-218ENST00000556256 ARIH2O95376 493 aa4.3□□□□□ -1.72
SCFD1-218ENST00000556256 PRKCBP05771 671 aa4.3□□□□□ -1.72
SCFD1-218ENST00000556256 E2F1Q01094 437 aa4.3□□□□□ -1.72
SCFD1-218ENST00000556256 CYP1B1Q16678 543 aa4.3□□□□□ -1.72
SCFD1-218ENST00000556256 UAP1L1Q3KQV9 507 aa4.3□□□□□ -1.72
SCFD1-218ENST00000556256 ZNF585BQ52M93 769 aa4.3□□□□□ -1.72
SCFD1-218ENST00000556256 ARFGAP1Q8N6T3 406 aa4.3□□□□□ -1.72
SCFD1-218ENST00000556256 CNTD1Q8N815 330 aa4.3□□□□□ -1.72
SCFD1-218ENST00000556256 PNISRQ8TF01 805 aaKnown RBP4.3□□□□□ -1.72
SCFD1-218ENST00000556256 DPCDQ9BVM2 203 aaPredicted RBP4.3□□□□□ -1.72
SCFD1-218ENST00000556256 WDCPQ9H6R7 721 aa4.3□□□□□ -1.72
SCFD1-218ENST00000556256 MLXIPQ9HAP2 919 aa4.3□□□□□ -1.72
SCFD1-218ENST00000556256 TXLNGQ9NUQ3 528 aa4.3□□□□□ -1.72
SCFD1-218ENST00000556256 SHROOM4Q9ULL8 1493 aa4.3□□□□□ -1.72
SCFD1-218ENST00000556256 hCG_1984214I3L0E3 225 aa4.29□□□□□ -1.72
SCFD1-218ENST00000556256 XPOTO43592 962 aaKnown RBP4.29□□□□□ -1.72
SCFD1-218ENST00000556256 CNOT3O75175 753 aaKnown RBP4.29□□□□□ -1.72
SCFD1-218ENST00000556256 TULP3O75386 442 aa4.29□□□□□ -1.72
SCFD1-218ENST00000556256 MT-CO1P00395 513 aa4.29□□□□□ -1.72
SCFD1-218ENST00000556256 AHSGP02765 367 aa4.29□□□□□ -1.72
SCFD1-218ENST00000556256 MYCLP12524 364 aaPredicted RBP4.29□□□□□ -1.72
SCFD1-218ENST00000556256 ID2Q02363 134 aa4.29□□□□□ -1.72
SCFD1-218ENST00000556256 DEPDC1Q5TB30 811 aa4.29□□□□□ -1.72
SCFD1-218ENST00000556256 DAB2IPQ5VWQ8 1189 aa4.29□□□□□ -1.72
SCFD1-218ENST00000556256 SDE2Q6IQ49 451 aa4.29□□□□□ -1.72
SCFD1-218ENST00000556256 PPP1R3BQ86XI6 285 aa4.29□□□□□ -1.72
SCFD1-218ENST00000556256 ANKRD13BQ86YJ7 626 aa4.29□□□□□ -1.72
SCFD1-218ENST00000556256 ZFYVE19Q96K21 471 aa4.29□□□□□ -1.72
SCFD1-218ENST00000556256 TEKT5Q96M29 485 aa4.29□□□□□ -1.72
SCFD1-218ENST00000556256 SLKQ9H2G2 1235 aaPredicted RBP4.29□□□□□ -1.72
SCFD1-218ENST00000556256 ABCF2Q9UG63 623 aa4.29□□□□□ -1.72
SCFD1-218ENST00000556256 MRPS17Q9Y2R5 130 aaKnown RBP4.29□□□□□ -1.72
SCFD1-218ENST00000556256 CSF1RP07333 972 aa4.28□□□□□ -1.72
SCFD1-218ENST00000556256 THBS4P35443 961 aa4.28□□□□□ -1.72
SCFD1-218ENST00000556256 LY6KQ17RY6 165 aa4.28□□□□□ -1.72
SCFD1-218ENST00000556256 AWAT1Q58HT5 328 aa4.28□□□□□ -1.72
SCFD1-218ENST00000556256 HEATR3Q7Z4Q2 680 aa4.28□□□□□ -1.72
SCFD1-218ENST00000556256 CAND1Q86VP6 1230 aaKnown RBP4.28□□□□□ -1.72
SCFD1-218ENST00000556256 LIX1LQ8IVB5 337 aa4.28□□□□□ -1.72
SCFD1-218ENST00000556256 ATL2Q8NHH9 583 aa4.28□□□□□ -1.72
SCFD1-218ENST00000556256 ZPBPQ9BS86 351 aa4.28□□□□□ -1.72
SCFD1-218ENST00000556256 SLC28A2O43868 658 aa4.27□□□□□ -1.73
SCFD1-218ENST00000556256 RNF8O76064 485 aa4.27□□□□□ -1.73
SCFD1-218ENST00000556256 VNN1O95497 513 aa4.27□□□□□ -1.73
SCFD1-218ENST00000556256 MT-CO3P00414 261 aa4.27□□□□□ -1.73
SCFD1-218ENST00000556256 FGAP02671 866 aa4.27□□□□□ -1.73
SCFD1-218ENST00000556256 TGFB3P10600 412 aa4.27□□□□□ -1.73
SCFD1-218ENST00000556256 CTSAP10619 480 aa4.27□□□□□ -1.73
SCFD1-218ENST00000556256 CNGA1P29973 690 aa4.27□□□□□ -1.73
SCFD1-218ENST00000556256 KRTAP10-5P60370 271 aa4.27□□□□□ -1.73
SCFD1-218ENST00000556256 PSG6Q00889 435 aa4.27□□□□□ -1.73
SCFD1-218ENST00000556256 CFHR1Q03591 330 aa4.27□□□□□ -1.73
SCFD1-218ENST00000556256 NOGQ13253 232 aa4.27□□□□□ -1.73
SCFD1-218ENST00000556256 SEC23BQ15437 767 aa4.27□□□□□ -1.73
SCFD1-218ENST00000556256 AMOTQ4VCS5 1084 aa4.27□□□□□ -1.73
SCFD1-218ENST00000556256 DGKKQ5KSL6 1271 aa4.27□□□□□ -1.73
SCFD1-218ENST00000556256 TMTC4Q5T4D3 741 aa4.27□□□□□ -1.73
SCFD1-218ENST00000556256 EGFLAMQ63HQ2 1017 aa4.27□□□□□ -1.73
SCFD1-218ENST00000556256 DPY19L3Q6ZPD9 716 aa4.27□□□□□ -1.73
SCFD1-218ENST00000556256 KRT26Q7Z3Y9 468 aa4.27□□□□□ -1.73
SCFD1-218ENST00000556256 SFTPA1Q8IWL2 248 aa4.27□□□□□ -1.73
SCFD1-218ENST00000556256 PCSK9Q8NBP7 692 aaKnown RBP4.27□□□□□ -1.73
SCFD1-218ENST00000556256 OSCP1Q8WVF1 389 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms