RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 SLC22A12Q96S37 553 aa12.14□□□□□ -0.47
YBX3-216ENST00000544622 HNRNPABQ99729 332 aaKnown RBP12.14□□□□□ -0.47
YBX3-216ENST00000544622 MFSD1Q9H3U5 465 aa12.14□□□□□ -0.47
YBX3-216ENST00000544622 TBC1D17Q9HA65 648 aa12.14□□□□□ -0.47
YBX3-216ENST00000544622 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.14□□□□□ -0.47
YBX3-216ENST00000544622 HEBP1Q9NRV9 189 aa12.14□□□□□ -0.47
YBX3-216ENST00000544622 CCL26Q9Y258 94 aa12.14□□□□□ -0.47
YBX3-216ENST00000544622 DENND4CQ5VZ89 1909 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 COL4A3Q01955 1670 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 CACNA1HO95180 2353 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 KANSL1LA0AUZ9 987 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 ZNF840PA6NDX5 716 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 P4HA2O15460 535 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 GNA14O95837 355 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 OLFM2O95897 454 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 GLULP15104 373 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 GDI1P31150 447 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 PPP3CCP48454 512 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 FMO5P49326 533 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 STX17P56962 302 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 ZXDBP98169 803 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 ORC1Q13415 861 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 TCERG1LQ5VWI1 586 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 SNX30Q5VWJ9 437 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 GPIHBP1Q8IV16 184 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 NUP93Q8N1F7 819 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 CELF5Q8N6W0 485 aaKnown RBP12.13□□□□□ -0.47
YBX3-216ENST00000544622 MLKLQ8NB16 471 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 RIN3Q8TB24 985 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 SLC2A14Q8TDB8 520 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 BPIFB1Q8TDL5 484 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 MRPS31Q92665 395 aaKnown RBP12.13□□□□□ -0.47
YBX3-216ENST00000544622 CYFIP2Q96F07 1278 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 CYP2S1Q96SQ9 504 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 SMOQ99835 787 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 FAM83CQ9BQN1 747 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 NT5C1AQ9BXI3 368 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 SRRTQ9BXP5 876 aaKnown RBP12.13□□□□□ -0.47
YBX3-216ENST00000544622 OSBPL6Q9BZF3 934 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 SMG9Q9H0W8 520 aaKnown RBP12.13□□□□□ -0.47
YBX3-216ENST00000544622 BRD9Q9H8M2 597 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 CISHQ9NSE2 258 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 TDP1Q9NUW8 608 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 EHD2Q9NZN4 543 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 RWDD2AQ9UIY3 292 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 CTNND2Q9UQB3 1225 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 MTF2Q9Y483 593 aaPredicted RBP12.13□□□□□ -0.47
YBX3-216ENST00000544622 COL4A2P08572 1712 aa12.13□□□□□ -0.47
YBX3-216ENST00000544622 OBSL1O75147 1896 aa12.12□□□□□ -0.47
YBX3-216ENST00000544622 NUP210Q8TEM1 1887 aaPredicted RBP12.12□□□□□ -0.47
YBX3-216ENST00000544622 C2orf78A6NCI8 922 aa12.12□□□□□ -0.47
YBX3-216ENST00000544622 HHLA1C9JL84 531 aa12.12□□□□□ -0.47
YBX3-216ENST00000544622 ZNF263O14978 683 aa12.12□□□□□ -0.47
YBX3-216ENST00000544622 GALR2O43603 387 aaPredicted RBP12.12□□□□□ -0.47
YBX3-216ENST00000544622 ZDHHC11BP0C7U3 371 aa12.12□□□□□ -0.47
YBX3-216ENST00000544622 CCDC130P13994 396 aa12.12□□□□□ -0.47
YBX3-216ENST00000544622 TCF3P15923 654 aa12.12□□□□□ -0.47
YBX3-216ENST00000544622 PFKLP17858 780 aa12.12□□□□□ -0.47
YBX3-216ENST00000544622 ANXA13P27216 316 aa12.12□□□□□ -0.47
YBX3-216ENST00000544622 AVPR1AP37288 418 aa12.12□□□□□ -0.47
YBX3-216ENST00000544622 RAD23BP54727 409 aa12.12□□□□□ -0.47
YBX3-216ENST00000544622 CLEC20AQ6ZU45 233 aa12.12□□□□□ -0.47
YBX3-216ENST00000544622 IRF2BP1Q8IU81 584 aa12.12□□□□□ -0.47
YBX3-216ENST00000544622 TTC39CQ8N584 583 aa12.12□□□□□ -0.47
YBX3-216ENST00000544622 UBR7Q8N806 425 aa12.12□□□□□ -0.47
YBX3-216ENST00000544622 SLC4A11Q8NBS3 891 aa12.12□□□□□ -0.47
YBX3-216ENST00000544622 CCDC150Q8NCX0 1101 aa12.12□□□□□ -0.47
YBX3-216ENST00000544622 PJA1Q8NG27 643 aa12.12□□□□□ -0.47
YBX3-216ENST00000544622 GPT2Q8TD30 523 aa12.12□□□□□ -0.47
YBX3-216ENST00000544622 OVCA2Q8WZ82 227 aa12.12□□□□□ -0.47
YBX3-216ENST00000544622 SMARCD1Q96GM5 515 aa12.12□□□□□ -0.47
YBX3-216ENST00000544622 ARID3AQ99856 593 aa12.12□□□□□ -0.47
YBX3-216ENST00000544622 FOXQ1Q9C009 403 aa12.12□□□□□ -0.47
YBX3-216ENST00000544622 DMAP1Q9NPF5 467 aaPredicted RBP12.12□□□□□ -0.47
YBX3-216ENST00000544622 COMMD8Q9NX08 183 aa12.12□□□□□ -0.47
YBX3-216ENST00000544622 SIT1Q9Y3P8 196 aa12.12□□□□□ -0.47
YBX3-216ENST00000544622 F5P12259 2224 aa12.11□□□□□ -0.47
YBX3-216ENST00000544622 AP1G2O75843 785 aa12.11□□□□□ -0.47
YBX3-216ENST00000544622 OAS1P00973 400 aaKnown RBP12.11□□□□□ -0.47
YBX3-216ENST00000544622 CD58P19256 250 aa12.11□□□□□ -0.47
YBX3-216ENST00000544622 CD72P21854 359 aa12.11□□□□□ -0.47
YBX3-216ENST00000544622 YWHAQP27348 245 aa12.11□□□□□ -0.47
YBX3-216ENST00000544622 SLC5A3P53794 718 aa12.11□□□□□ -0.47
YBX3-216ENST00000544622 KCNH2Q12809 1159 aa12.11□□□□□ -0.47
YBX3-216ENST00000544622 TAF10Q12962 218 aa12.11□□□□□ -0.47
YBX3-216ENST00000544622 CUL2Q13617 745 aa12.11□□□□□ -0.47
YBX3-216ENST00000544622 ARHGAP29Q52LW3 1261 aa12.11□□□□□ -0.47
YBX3-216ENST00000544622 WDR44Q5JSH3 913 aa12.11□□□□□ -0.47
YBX3-216ENST00000544622 PPP1R26Q5T8A7 1209 aaPredicted RBP12.11□□□□□ -0.47
YBX3-216ENST00000544622 ZNF852Q6ZMS4 543 aa12.11□□□□□ -0.47
YBX3-216ENST00000544622 RBM43Q6ZSC3 357 aaKnown RBP12.11□□□□□ -0.47
YBX3-216ENST00000544622 TPRG1Q6ZUI0 275 aa12.11□□□□□ -0.47
YBX3-216ENST00000544622 CCDC105Q8IYK2 499 aa12.11□□□□□ -0.47
YBX3-216ENST00000544622 SCAMP5Q8TAC9 235 aa12.11□□□□□ -0.47
YBX3-216ENST00000544622 CLDN23Q96B33 292 aa12.11□□□□□ -0.47
YBX3-216ENST00000544622 TMEM176AQ96HP8 235 aa12.11□□□□□ -0.47
YBX3-216ENST00000544622 NELL2Q99435 816 aa12.11□□□□□ -0.47
YBX3-216ENST00000544622 RNF38Q9H0F5 515 aa12.11□□□□□ -0.47
YBX3-216ENST00000544622 KIF9Q9HAQ2 790 aa12.11□□□□□ -0.47
YBX3-216ENST00000544622 PNPLA8Q9NP80 782 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms