RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 CD101Q93033 1021 aa16.83■□□□□ 0.28
NUP54-214ENST00000514307 ZNF689Q96CS4 500 aaPredicted RBP16.83■□□□□ 0.28
NUP54-214ENST00000514307 ZNF558Q96NG5 402 aa16.83■□□□□ 0.28
NUP54-214ENST00000514307 PSMB7Q99436 277 aa16.83■□□□□ 0.28
NUP54-214ENST00000514307 RTP3Q9BQQ7 232 aa16.83■□□□□ 0.28
NUP54-214ENST00000514307 CNPY3Q9BT09 278 aa16.83■□□□□ 0.28
NUP54-214ENST00000514307 GOLPH3Q9H4A6 298 aa16.83■□□□□ 0.28
NUP54-214ENST00000514307 UQCRHLA0A096LP55 91 aa16.82■□□□□ 0.28
NUP54-214ENST00000514307 CLDN5O00501 218 aa16.82■□□□□ 0.28
NUP54-214ENST00000514307 ZNF185O15231 689 aa16.82■□□□□ 0.28
NUP54-214ENST00000514307 PSTPIP1O43586 416 aa16.82■□□□□ 0.28
NUP54-214ENST00000514307 B4GALT3O60512 393 aa16.82■□□□□ 0.28
NUP54-214ENST00000514307 TUBBP07437 444 aa16.82■□□□□ 0.28
NUP54-214ENST00000514307 UQCRHP07919 91 aa16.82■□□□□ 0.28
NUP54-214ENST00000514307 GLI1P08151 1106 aa16.82■□□□□ 0.28
NUP54-214ENST00000514307 LCP1P13796 627 aa16.82■□□□□ 0.28
NUP54-214ENST00000514307 PDGFRAP16234 1089 aa16.82■□□□□ 0.28
NUP54-214ENST00000514307 LAG3P18627 525 aa16.82■□□□□ 0.28
NUP54-214ENST00000514307 PSMA2P25787 234 aa16.82■□□□□ 0.28
NUP54-214ENST00000514307 TKTP29401 623 aaKnown RBP16.82■□□□□ 0.28
NUP54-214ENST00000514307 ZNF143P52747 638 aaPredicted RBP16.82■□□□□ 0.28
NUP54-214ENST00000514307 MAP3K7CLP57077 242 aa16.82■□□□□ 0.28
NUP54-214ENST00000514307 RNASE9P60153 205 aaKnown RBP16.82■□□□□ 0.28
NUP54-214ENST00000514307 WDR5P61964 334 aaKnown RBP16.82■□□□□ 0.28
NUP54-214ENST00000514307 BTG3Q14201 252 aaPredicted RBP16.82■□□□□ 0.28
NUP54-214ENST00000514307 PPP2R5EQ16537 467 aa16.82■□□□□ 0.28
NUP54-214ENST00000514307 USP41Q3LFD5 358 aa16.82■□□□□ 0.28
NUP54-214ENST00000514307 VARS2Q5ST30 1063 aaKnown RBP16.82■□□□□ 0.28
NUP54-214ENST00000514307 ZNF280DQ6N043 979 aa16.82■□□□□ 0.28
NUP54-214ENST00000514307 FUT10Q6P4F1 479 aa16.82■□□□□ 0.28
NUP54-214ENST00000514307 ZNF572Q7Z3I7 529 aaPredicted RBP16.82■□□□□ 0.28
NUP54-214ENST00000514307 FAM35AQ86V20 835 aa16.82■□□□□ 0.28
NUP54-214ENST00000514307 RCOR2Q8IZ40 523 aa16.82■□□□□ 0.28
NUP54-214ENST00000514307 SIX6OS1Q8N1H7 587 aa16.82■□□□□ 0.28
NUP54-214ENST00000514307 RASGEF1CQ8N431 466 aa16.82■□□□□ 0.28
NUP54-214ENST00000514307 VWCEQ96DN2 955 aa16.82■□□□□ 0.28
NUP54-214ENST00000514307 FUBP3Q96I24 572 aaKnown RBP eCLIP16.82■□□□□ 0.28
NUP54-214ENST00000514307 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.82■□□□□ 0.28
NUP54-214ENST00000514307 TTPALQ9BTX7 342 aa16.82■□□□□ 0.28
NUP54-214ENST00000514307 ZCWPW1Q9H0M4 648 aa16.82■□□□□ 0.28
NUP54-214ENST00000514307 CSNK1G1Q9HCP0 422 aa16.82■□□□□ 0.28
NUP54-214ENST00000514307 DDX56Q9NY93 547 aaKnown RBP16.82■□□□□ 0.28
NUP54-214ENST00000514307 USTQ9Y2C2 406 aa16.82■□□□□ 0.28
NUP54-214ENST00000514307 PGRMC1O00264 195 aaKnown RBP16.81■□□□□ 0.28
NUP54-214ENST00000514307 ZRANB2O95218 330 aaKnown RBP eCLIP16.81■□□□□ 0.28
NUP54-214ENST00000514307 KRT7P08729 469 aa16.81■□□□□ 0.28
NUP54-214ENST00000514307 ACRP10323 421 aa16.81■□□□□ 0.28
NUP54-214ENST00000514307 GPD1P21695 349 aa16.81■□□□□ 0.28
NUP54-214ENST00000514307 SEL1L2Q5TEA6 688 aa16.81■□□□□ 0.28
NUP54-214ENST00000514307 KIAA1841Q6NSI8 718 aa16.81■□□□□ 0.28
NUP54-214ENST00000514307 LLGL2Q6P1M3 1020 aa16.81■□□□□ 0.28
NUP54-214ENST00000514307 CLEC20AQ6ZU45 233 aa16.81■□□□□ 0.28
NUP54-214ENST00000514307 FAM183BPQ6ZVS7 135 aa16.81■□□□□ 0.28
NUP54-214ENST00000514307 MYLPFQ96A32 169 aa16.81■□□□□ 0.28
NUP54-214ENST00000514307 ZBED2Q9BTP6 218 aa16.81■□□□□ 0.28
NUP54-214ENST00000514307 TRIM62Q9BVG3 475 aa16.81■□□□□ 0.28
NUP54-214ENST00000514307 GPR62Q9BZJ7 368 aa16.81■□□□□ 0.28
NUP54-214ENST00000514307 MTIF3Q9H2K0 278 aaKnown RBP16.81■□□□□ 0.28
NUP54-214ENST00000514307 CWH43Q9H720 699 aa16.81■□□□□ 0.28
NUP54-214ENST00000514307 PNPLA8Q9NP80 782 aa16.81■□□□□ 0.28
NUP54-214ENST00000514307 DMAP1Q9NPF5 467 aaPredicted RBP16.81■□□□□ 0.28
NUP54-214ENST00000514307 METTL5Q9NRN9 209 aaKnown RBP16.81■□□□□ 0.28
NUP54-214ENST00000514307 KRT82Q9NSB4 513 aa16.81■□□□□ 0.28
NUP54-214ENST00000514307 SPG21Q9NZD8 308 aa16.81■□□□□ 0.28
NUP54-214ENST00000514307 TMEM59LQ9UK28 342 aa16.81■□□□□ 0.28
NUP54-214ENST00000514307 PCDHB5Q9Y5E4 795 aa16.81■□□□□ 0.28
NUP54-214ENST00000514307 ZBBXA8MT70 800 aa16.8■□□□□ 0.28
NUP54-214ENST00000514307 F8W810 466 aa16.8■□□□□ 0.28
NUP54-214ENST00000514307 TULP2O00295 520 aa16.8■□□□□ 0.28
NUP54-214ENST00000514307 PAPSS1O43252 624 aaPredicted RBP16.8■□□□□ 0.28
NUP54-214ENST00000514307 SDC4P31431 198 aa16.8■□□□□ 0.28
NUP54-214ENST00000514307 TKTL1P51854 596 aa16.8■□□□□ 0.28
NUP54-214ENST00000514307 PSRC1Q6PGN9 363 aaPredicted RBP16.8■□□□□ 0.28
NUP54-214ENST00000514307 KCNT2Q6UVM3 1135 aa16.8■□□□□ 0.28
NUP54-214ENST00000514307 VSTM1Q6UX27 236 aa16.8■□□□□ 0.28
NUP54-214ENST00000514307 ZNF365Q70YC5 407 aa16.8■□□□□ 0.28
NUP54-214ENST00000514307 SLC26A9Q7LBE3 791 aa16.8■□□□□ 0.28
NUP54-214ENST00000514307 OTOP2Q7RTS6 562 aa16.8■□□□□ 0.28
NUP54-214ENST00000514307 LRRTM3Q86VH5 581 aa16.8■□□□□ 0.28
NUP54-214ENST00000514307 SPATA4Q8NEY3 305 aa16.8■□□□□ 0.28
NUP54-214ENST00000514307 PHOSPHO2Q8TCD6 241 aa16.8■□□□□ 0.28
NUP54-214ENST00000514307 C2orf15Q8WU43 125 aaKnown RBP16.8■□□□□ 0.28
NUP54-214ENST00000514307 RXFP2Q8WXD0 754 aa16.8■□□□□ 0.28
NUP54-214ENST00000514307 IRGQQ8WZA9 623 aa16.8■□□□□ 0.28
NUP54-214ENST00000514307 BADQ92934 168 aa16.8■□□□□ 0.28
NUP54-214ENST00000514307 IGSF21Q96ID5 467 aa16.8■□□□□ 0.28
NUP54-214ENST00000514307 YME1L1Q96TA2 773 aa16.8■□□□□ 0.28
NUP54-214ENST00000514307 PKMYT1Q99640 499 aa16.8■□□□□ 0.28
NUP54-214ENST00000514307 SMOQ99835 787 aa16.8■□□□□ 0.28
NUP54-214ENST00000514307 LBHD1Q9BQE6 289 aaPredicted RBP16.8■□□□□ 0.28
NUP54-214ENST00000514307 TRIM7Q9C029 511 aa16.8■□□□□ 0.28
NUP54-214ENST00000514307 CNGB3Q9NQW8 809 aa16.8■□□□□ 0.28
NUP54-214ENST00000514307 TMEM51Q9NW97 253 aa16.8■□□□□ 0.28
NUP54-214ENST00000514307 MTUS1Q9ULD2 1270 aa16.8■□□□□ 0.28
NUP54-214ENST00000514307 SCN1AP35498 2009 aa16.79■□□□□ 0.28
NUP54-214ENST00000514307 C2CD4BA6NLJ0 364 aa16.79■□□□□ 0.28
NUP54-214ENST00000514307 NT5C1B-RDH14C9J2C7 533 aa16.79■□□□□ 0.28
NUP54-214ENST00000514307 CCDC188H7C350 402 aa16.79■□□□□ 0.28
NUP54-214ENST00000514307 DYNC1I1O14576 645 aa16.79■□□□□ 0.28
NUP54-214ENST00000514307 HSF2BPO75031 334 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms