RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 ARHGEF3Q9NR81 526 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 COMMD8Q9NX08 183 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 CTNND2Q9UQB3 1225 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 GREB1Q4ZG55 1949 aa10.32□□□□□ -0.76
RNF4-221ENST00000513643 BEST1O76090 585 aa10.31□□□□□ -0.76
RNF4-221ENST00000513643 GLULP15104 373 aa10.31□□□□□ -0.76
RNF4-221ENST00000513643 ACO1P21399 889 aaKnown RBP10.31□□□□□ -0.76
RNF4-221ENST00000513643 ERCC5P28715 1186 aaPredicted RBP10.31□□□□□ -0.76
RNF4-221ENST00000513643 PPP3CCP48454 512 aa10.31□□□□□ -0.76
RNF4-221ENST00000513643 RAD23BP54727 409 aa10.31□□□□□ -0.76
RNF4-221ENST00000513643 STX17P56962 302 aa10.31□□□□□ -0.76
RNF4-221ENST00000513643 ZXDBP98169 803 aa10.31□□□□□ -0.76
RNF4-221ENST00000513643 ARHGAP15Q53QZ3 475 aa10.31□□□□□ -0.76
RNF4-221ENST00000513643 ARHGAP17Q68EM7 881 aa10.31□□□□□ -0.76
RNF4-221ENST00000513643 TXNDC8Q6A555 127 aa10.31□□□□□ -0.76
RNF4-221ENST00000513643 SCN4BQ8IWT1 228 aa10.31□□□□□ -0.76
RNF4-221ENST00000513643 CELF5Q8N6W0 485 aaKnown RBP10.31□□□□□ -0.76
RNF4-221ENST00000513643 KIAA1958Q8N8K9 716 aa10.31□□□□□ -0.76
RNF4-221ENST00000513643 SLC4A11Q8NBS3 891 aa10.31□□□□□ -0.76
RNF4-221ENST00000513643 SLC2A14Q8TDB8 520 aa10.31□□□□□ -0.76
RNF4-221ENST00000513643 OVCA2Q8WZ82 227 aa10.31□□□□□ -0.76
RNF4-221ENST00000513643 USP13Q92995 863 aaPredicted RBP10.31□□□□□ -0.76
RNF4-221ENST00000513643 SMARCD1Q96GM5 515 aa10.31□□□□□ -0.76
RNF4-221ENST00000513643 SLC22A12Q96S37 553 aa10.31□□□□□ -0.76
RNF4-221ENST00000513643 FAM83CQ9BQN1 747 aa10.31□□□□□ -0.76
RNF4-221ENST00000513643 OSBPL6Q9BZF3 934 aa10.31□□□□□ -0.76
RNF4-221ENST00000513643 UBXN6Q9BZV1 441 aa10.31□□□□□ -0.76
RNF4-221ENST00000513643 IMPG2Q9BZV3 1241 aa10.31□□□□□ -0.76
RNF4-221ENST00000513643 PNPLA8Q9NP80 782 aa10.31□□□□□ -0.76
RNF4-221ENST00000513643 CISHQ9NSE2 258 aa10.31□□□□□ -0.76
RNF4-221ENST00000513643 CNTN6Q9UQ52 1028 aa10.31□□□□□ -0.76
RNF4-221ENST00000513643 CCL26Q9Y258 94 aa10.31□□□□□ -0.76
RNF4-221ENST00000513643 USP34Q70CQ2 3546 aa10.31□□□□□ -0.76
RNF4-221ENST00000513643 DENND4CQ5VZ89 1909 aa10.31□□□□□ -0.76
RNF4-221ENST00000513643 OAS1P00973 400 aaKnown RBP10.3□□□□□ -0.76
RNF4-221ENST00000513643 CCDC130P13994 396 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 SLC7A9P82251 487 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 KCNH2Q12809 1159 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 TCF15Q12870 199 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 ORC1Q13415 861 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 CUL2Q13617 745 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 GRM2Q14416 872 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 MLF2Q15773 248 aaPredicted RBP10.3□□□□□ -0.76
RNF4-221ENST00000513643 DPCR1Q3MIW9 517 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 DCAF17Q5H9S7 520 aaPredicted RBP10.3□□□□□ -0.76
RNF4-221ENST00000513643 WDR44Q5JSH3 913 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 TCERG1LQ5VWI1 586 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 SMYD5Q6GMV2 418 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 DPY19L2P1Q6NXN4 242 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 CLEC20AQ6ZU45 233 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 SUGP1Q8IWZ8 645 aaKnown RBP10.3□□□□□ -0.76
RNF4-221ENST00000513643 NUP93Q8N1F7 819 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 MAB21L3Q8N8X9 362 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 EHBP1Q8NDI1 1231 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 PRSS33Q8NF86 280 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 SCAMP5Q8TAC9 235 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 MRPS31Q92665 395 aaKnown RBP10.3□□□□□ -0.76
RNF4-221ENST00000513643 IRF7Q92985 503 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 CLDN23Q96B33 292 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 CYFIP2Q96F07 1278 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 TMEM176AQ96HP8 235 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 GBP4Q96PP9 640 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 CYP2S1Q96SQ9 504 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 RNF38Q9H0F5 515 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 NUP62CLQ9H1M0 184 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 MMRN2Q9H8L6 949 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 TBC1D17Q9HA65 648 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 DMAP1Q9NPF5 467 aaPredicted RBP10.3□□□□□ -0.76
RNF4-221ENST00000513643 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.3□□□□□ -0.76
RNF4-221ENST00000513643 TDP1Q9NUW8 608 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 EHD2Q9NZN4 543 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 FBXL21Q9UKT6 434 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 CA14Q9ULX7 337 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 MAGED2Q9UNF1 606 aaPredicted RBP10.3□□□□□ -0.76
RNF4-221ENST00000513643 USP3Q9Y6I4 520 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 COL4A2P08572 1712 aa10.3□□□□□ -0.76
RNF4-221ENST00000513643 KANSL1LA0AUZ9 987 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 C2orf78A6NCI8 922 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 ZNF263O14978 683 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 AP1G2O75843 785 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 RTN3O95197 1032 aaPredicted RBP10.29□□□□□ -0.76
RNF4-221ENST00000513643 FGFR1OPO95684 399 aaKnown RBP10.29□□□□□ -0.76
RNF4-221ENST00000513643 CD58P19256 250 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 ANXA13P27216 316 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 GDI1P31150 447 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 PGFP49763 221 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 TUBP50607 506 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 SLC5A3P53794 718 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 GCNT1Q02742 428 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 TAF10Q12962 218 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 ZNF77Q15935 545 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 TAF12Q16514 161 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 CCDC40Q4G0X9 1142 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 PKDCCQ504Y2 493 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 ARHGAP29Q52LW3 1261 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 PPP1R26Q5T8A7 1209 aaPredicted RBP10.29□□□□□ -0.76
RNF4-221ENST00000513643 MAMSTRQ6ZN01 415 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 GPIHBP1Q8IV16 184 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 CCDC150Q8NCX0 1101 aa10.29□□□□□ -0.76
RNF4-221ENST00000513643 BPIFB1Q8TDL5 484 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms