RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 A0A1W2PPC1 479 aa20.46■□□□□ 0.87
USP39-218ENST00000493829 RTN2O75298 545 aa20.46■□□□□ 0.87
USP39-218ENST00000493829 LCA5LO95447 670 aa20.46■□□□□ 0.87
USP39-218ENST00000493829 SEC24AO95486 1093 aa20.46■□□□□ 0.87
USP39-218ENST00000493829 MAGEA1P43355 309 aa20.46■□□□□ 0.87
USP39-218ENST00000493829 IFRD2Q12894 506 aaPredicted RBP20.46■□□□□ 0.87
USP39-218ENST00000493829 DDR2Q16832 855 aa20.46■□□□□ 0.87
USP39-218ENST00000493829 PRPF38BQ5VTL8 546 aaKnown RBP20.46■□□□□ 0.87
USP39-218ENST00000493829 GPRIN1Q7Z2K8 1008 aa20.46■□□□□ 0.87
USP39-218ENST00000493829 ADGRD2Q7Z7M1 963 aa20.46■□□□□ 0.87
USP39-218ENST00000493829 KIAA1328Q86T90 577 aa20.46■□□□□ 0.87
USP39-218ENST00000493829 RBM23Q86U06 439 aaKnown RBP20.46■□□□□ 0.87
USP39-218ENST00000493829 PIGZQ86VD9 579 aa20.46■□□□□ 0.87
USP39-218ENST00000493829 ZNF461Q8TAF7 563 aa20.46■□□□□ 0.87
USP39-218ENST00000493829 SPPL2BQ8TCT7 592 aa20.46■□□□□ 0.87
USP39-218ENST00000493829 FUBP3Q96I24 572 aaKnown RBP eCLIP20.46■□□□□ 0.87
USP39-218ENST00000493829 CYP4F11Q9HBI6 524 aa20.46■□□□□ 0.87
USP39-218ENST00000493829 AFF4Q9UHB7 1163 aaKnown RBP20.46■□□□□ 0.87
USP39-218ENST00000493829 PATJQ8NI35 1801 aa20.46■□□□□ 0.87
USP39-218ENST00000493829 CDH23Q9H251 3354 aa20.46■□□□□ 0.87
USP39-218ENST00000493829 XPO1O14980 1071 aaKnown RBP20.45■□□□□ 0.86
USP39-218ENST00000493829 PER2O15055 1255 aa20.45■□□□□ 0.86
USP39-218ENST00000493829 TGM5O43548 720 aa20.45■□□□□ 0.86
USP39-218ENST00000493829 ERBB2P04626 1255 aa20.45■□□□□ 0.86
USP39-218ENST00000493829 LCP1P13796 627 aa20.45■□□□□ 0.86
USP39-218ENST00000493829 ERICH1Q86X53 443 aa20.45■□□□□ 0.86
USP39-218ENST00000493829 GPR65Q8IYL9 337 aa20.45■□□□□ 0.86
USP39-218ENST00000493829 C17orf53Q8N3J3 647 aaPredicted RBP20.45■□□□□ 0.86
USP39-218ENST00000493829 SLC35F5Q8WV83 523 aa20.45■□□□□ 0.86
USP39-218ENST00000493829 ZNF653Q96CK0 615 aa20.45■□□□□ 0.86
USP39-218ENST00000493829 PPP1R13BQ96KQ4 1090 aa20.45■□□□□ 0.86
USP39-218ENST00000493829 NOX5Q96PH1 765 aa20.45■□□□□ 0.86
USP39-218ENST00000493829 ADAM22Q9P0K1 906 aa20.45■□□□□ 0.86
USP39-218ENST00000493829 CHORDC1Q9UHD1 332 aaPredicted RBP20.45■□□□□ 0.86
USP39-218ENST00000493829 IRAK3Q9Y616 596 aa20.45■□□□□ 0.86
USP39-218ENST00000493829 E5RJQ4 531 aa20.45■□□□□ 0.86
USP39-218ENST00000493829 SOX1O00570 391 aaPredicted RBP20.45■□□□□ 0.86
USP39-218ENST00000493829 PRRG1O14668 218 aa20.45■□□□□ 0.86
USP39-218ENST00000493829 ABLIM3O94929 683 aa20.45■□□□□ 0.86
USP39-218ENST00000493829 CCDC175P0C221 793 aa20.45■□□□□ 0.86
USP39-218ENST00000493829 HAPLN1P10915 354 aaPredicted RBP20.45■□□□□ 0.86
USP39-218ENST00000493829 PLA2G4AP47712 749 aa20.45■□□□□ 0.86
USP39-218ENST00000493829 GALCP54803 685 aa20.45■□□□□ 0.86
USP39-218ENST00000493829 MON1BQ7L1V2 547 aa20.45■□□□□ 0.86
USP39-218ENST00000493829 IPO4Q8TEX9 1081 aaKnown RBP20.45■□□□□ 0.86
USP39-218ENST00000493829 C2orf15Q8WU43 125 aaKnown RBP20.45■□□□□ 0.86
USP39-218ENST00000493829 MIS12Q9H081 205 aa20.45■□□□□ 0.86
USP39-218ENST00000493829 THAP2Q9H0W7 228 aa20.45■□□□□ 0.86
USP39-218ENST00000493829 ABCB6Q9NP58 842 aa20.45■□□□□ 0.86
USP39-218ENST00000493829 MYO1AQ9UBC5 1043 aa20.45■□□□□ 0.86
USP39-218ENST00000493829 PPP2R2CQ9Y2T4 447 aa20.45■□□□□ 0.86
USP39-218ENST00000493829 TRIOBPQ9H2D6 2365 aa20.44■□□□□ 0.86
USP39-218ENST00000493829 RCCD1A6NED2 376 aa20.44■□□□□ 0.86
USP39-218ENST00000493829 H2AFZP0C0S5 128 aa20.44■□□□□ 0.86
USP39-218ENST00000493829 GZMAP12544 262 aa20.44■□□□□ 0.86
USP39-218ENST00000493829 ATF2P15336 505 aa20.44■□□□□ 0.86
USP39-218ENST00000493829 ELF1P32519 619 aa20.44■□□□□ 0.86
USP39-218ENST00000493829 KRT83P78385 493 aa20.44■□□□□ 0.86
USP39-218ENST00000493829 ADIGQ0VDE8 80 aa20.44■□□□□ 0.86
USP39-218ENST00000493829 SMARCB1Q12824 385 aa20.44■□□□□ 0.86
USP39-218ENST00000493829 TPGS2Q68CL5 300 aa20.44■□□□□ 0.86
USP39-218ENST00000493829 H2AFVQ71UI9 128 aa20.44■□□□□ 0.86
USP39-218ENST00000493829 PHF13Q86YI8 300 aaPredicted RBP20.44■□□□□ 0.86
USP39-218ENST00000493829 ISCUQ9H1K1 167 aa20.44■□□□□ 0.86
USP39-218ENST00000493829 PRDM12Q9H4Q4 367 aa20.44■□□□□ 0.86
USP39-218ENST00000493829 CSNK1G1Q9HCP0 422 aa20.44■□□□□ 0.86
USP39-218ENST00000493829 TRMT1Q9NXH9 659 aaKnown RBP20.44■□□□□ 0.86
USP39-218ENST00000493829 TRANK1O15050 2925 aa20.44■□□□□ 0.86
USP39-218ENST00000493829 GOLGA8SH3BPF8 625 aa20.43■□□□□ 0.86
USP39-218ENST00000493829 GABBR2O75899 941 aa20.43■□□□□ 0.86
USP39-218ENST00000493829 GLUD1P00367 558 aa20.43■□□□□ 0.86
USP39-218ENST00000493829 MMP8P22894 467 aa20.43■□□□□ 0.86
USP39-218ENST00000493829 MAGEA11P43364 429 aa20.43■□□□□ 0.86
USP39-218ENST00000493829 HS1BP3Q53T59 392 aa20.43■□□□□ 0.86
USP39-218ENST00000493829 VSTM1Q6UX27 236 aa20.43■□□□□ 0.86
USP39-218ENST00000493829 MCOLN2Q8IZK6 566 aa20.43■□□□□ 0.86
USP39-218ENST00000493829 MSANTD4Q8NCY6 345 aa20.43■□□□□ 0.86
USP39-218ENST00000493829 GIPC2Q8TF65 315 aa20.43■□□□□ 0.86
USP39-218ENST00000493829 ARHGEF26Q96DR7 871 aa20.43■□□□□ 0.86
USP39-218ENST00000493829 LMAN2LQ9H0V9 348 aa20.43■□□□□ 0.86
USP39-218ENST00000493829 TRIM10Q9UDY6 481 aa20.43■□□□□ 0.86
USP39-218ENST00000493829 YIPF1Q9Y548 306 aa20.43■□□□□ 0.86
USP39-218ENST00000493829 HHLA1C9JL84 531 aa20.42■□□□□ 0.86
USP39-218ENST00000493829 TRIM66O15016 1216 aa20.42■□□□□ 0.86
USP39-218ENST00000493829 CLASP2O75122 1294 aaKnown RBP20.42■□□□□ 0.86
USP39-218ENST00000493829 ATF6P18850 670 aa20.42■□□□□ 0.86
USP39-218ENST00000493829 RRM1P23921 792 aa20.42■□□□□ 0.86
USP39-218ENST00000493829 VAV2P52735 878 aa20.42■□□□□ 0.86
USP39-218ENST00000493829 PTP4A2Q12974 167 aa20.42■□□□□ 0.86
USP39-218ENST00000493829 PDE12Q6L8Q7 609 aaKnown RBP20.42■□□□□ 0.86
USP39-218ENST00000493829 SLC7A14Q8TBB6 771 aa20.42■□□□□ 0.86
USP39-218ENST00000493829 CLEC4CQ8WTT0 213 aa20.42■□□□□ 0.86
USP39-218ENST00000493829 CTNNBL1Q8WYA6 563 aaPredicted RBP20.42■□□□□ 0.86
USP39-218ENST00000493829 LRCH3Q96II8 777 aa20.42■□□□□ 0.86
USP39-218ENST00000493829 TTYH1Q9H313 450 aaPredicted RBP20.42■□□□□ 0.86
USP39-218ENST00000493829 LRRC4Q9HBW1 653 aa20.42■□□□□ 0.86
USP39-218ENST00000493829 LUC7LQ9NQ29 371 aaKnown RBP20.42■□□□□ 0.86
USP39-218ENST00000493829 USP27XA6NNY8 438 aa20.42■□□□□ 0.86
USP39-218ENST00000493829 GJB6O95452 261 aa20.42■□□□□ 0.86
USP39-218ENST00000493829 CLCN4P51793 760 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms