RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 SLC8B1Q6J4K2 584 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 PDXDC1Q6P996 788 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.25□□□□□ -1.25
VPS52-219ENST00000493379 DPH6Q7L8W6 267 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 ZNF438Q7Z4V0 828 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 FILIP1Q7Z7B0 1213 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 SMYD4Q8IYR2 804 aaPredicted RBP7.25□□□□□ -1.25
VPS52-219ENST00000493379 C1orf127Q8N9H9 656 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 SMRP1Q8NCR6 262 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 BEST2Q8NFU1 509 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 FAXDC2Q96IV6 333 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 CEP63Q96MT8 703 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 TTPALQ9BTX7 342 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 GOLGA2P5Q9HBQ8 144 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 GPAMQ9HCL2 828 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 PARD6AQ9NPB6 346 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP7.25□□□□□ -1.25
VPS52-219ENST00000493379 DPP3Q9NY33 737 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 VTI1BQ9UEU0 232 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 DNMT3LQ9UJW3 386 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 ITGA11Q9UKX5 1188 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 MAFFQ9ULX9 164 aa7.25□□□□□ -1.25
VPS52-219ENST00000493379 SF3B1O75533 1304 aaKnown RBP eCLIP7.25□□□□□ -1.256e-6■■■■■ 31.6
VPS52-219ENST00000493379 GOLGA8IPA6NC78 632 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 GOLGA8JA6NMD2 632 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 HIDE1A8MVS5 230 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 GABRDO14764 452 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 PSMA7O14818 248 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 SLC16A3O15427 465 aaKnown RBP7.24□□□□□ -1.25
VPS52-219ENST00000493379 ABLIM3O94929 683 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 CST3P01034 146 aaPredicted RBP7.24□□□□□ -1.25
VPS52-219ENST00000493379 F11P03951 625 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 CNPP09543 421 aaKnown RBP7.24□□□□□ -1.25
VPS52-219ENST00000493379 HARSP12081 509 aaKnown RBP7.24□□□□□ -1.25
VPS52-219ENST00000493379 EPB42P16452 691 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 TGM1P22735 817 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 NR2F2P24468 414 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 GTF2H1P32780 548 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 PSMC2P35998 433 aaKnown RBP7.24□□□□□ -1.25
VPS52-219ENST00000493379 MATR3P43243 847 aaKnown RBP eCLIP7.24□□□□□ -1.25
VPS52-219ENST00000493379 RBP5P82980 135 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 CREMQ03060 361 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 STIM1Q13586 685 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 RAB33AQ14088 237 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 CCDC6Q16204 474 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 CAMK4Q16566 473 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 ZACNQ401N2 412 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 SCARA3Q6AZY7 606 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 ANKS3Q6ZW76 656 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 INTS8Q75QN2 995 aaKnown RBP7.24□□□□□ -1.25
VPS52-219ENST00000493379 TRAPPC11Q7Z392 1133 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 ADGRD2Q7Z7M1 963 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 PPFIBP1Q86W92 1011 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 OR5B17Q8NGF7 314 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 PPP2R3CQ969Q6 453 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 FRMD6Q96NE9 622 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 KLHL5Q96PQ7 755 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 CGRRF1Q99675 332 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 TCF25Q9BQ70 676 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 CLSTN3Q9BQT9 956 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 XYLT2Q9H1B5 865 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 NUP62CLQ9H1M0 184 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 RUBCNLQ9H714 662 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 MRPL17Q9NRX2 175 aaKnown RBP7.24□□□□□ -1.25
VPS52-219ENST00000493379 MTRRQ9UBK8 725 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 CACNG4Q9UBN1 327 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 TUBGCP4Q9UGJ1 667 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 RWDD2AQ9UIY3 292 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 BARX2Q9UMQ3 279 aaPredicted RBP7.24□□□□□ -1.25
VPS52-219ENST00000493379 MAPK8IP1Q9UQF2 711 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 FRMD4BQ9Y2L6 1034 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 PRG3Q9Y2Y8 225 aaPredicted RBP7.24□□□□□ -1.25
VPS52-219ENST00000493379 COQ4Q9Y3A0 265 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 DYNC1LI1Q9Y6G9 523 aaKnown RBP7.24□□□□□ -1.25
VPS52-219ENST00000493379 PTPRJQ12913 1337 aa7.24□□□□□ -1.25
VPS52-219ENST00000493379 TICRRQ7Z2Z1 1910 aa7.23□□□□□ -1.25
VPS52-219ENST00000493379 MYO9AB2RTY4 2548 aa7.23□□□□□ -1.25
VPS52-219ENST00000493379 BICDL2A1A5D9 508 aa7.23□□□□□ -1.25
VPS52-219ENST00000493379 ARHGEF37A1IGU5 675 aa7.23□□□□□ -1.25
VPS52-219ENST00000493379 LRRIQ3A6PVS8 624 aaPredicted RBP7.23□□□□□ -1.25
VPS52-219ENST00000493379 KPNA7A9QM74 516 aa7.23□□□□□ -1.25
VPS52-219ENST00000493379 PPEF2O14830 753 aa7.23□□□□□ -1.25
VPS52-219ENST00000493379 CETN3O15182 167 aa7.23□□□□□ -1.25
VPS52-219ENST00000493379 TEX28O15482 410 aa7.23□□□□□ -1.25
VPS52-219ENST00000493379 CLASP2O75122 1294 aaKnown RBP7.23□□□□□ -1.25
VPS52-219ENST00000493379 GLP2RO95838 553 aa7.23□□□□□ -1.25
VPS52-219ENST00000493379 POU2F2P09086 479 aa7.23□□□□□ -1.25
VPS52-219ENST00000493379 HOXB8P17481 243 aaPredicted RBP7.23□□□□□ -1.25
VPS52-219ENST00000493379 AOC1P19801 751 aa7.23□□□□□ -1.25
VPS52-219ENST00000493379 SPINK2P20155 84 aa7.23□□□□□ -1.25
VPS52-219ENST00000493379 PTMSP20962 102 aa7.23□□□□□ -1.25
VPS52-219ENST00000493379 IBSPP21815 317 aaPredicted RBP7.23□□□□□ -1.25
VPS52-219ENST00000493379 ATICP31939 592 aa7.23□□□□□ -1.25
VPS52-219ENST00000493379 BRCC3P46736 316 aa7.23□□□□□ -1.25
VPS52-219ENST00000493379 GLUD2P49448 558 aa7.23□□□□□ -1.25
VPS52-219ENST00000493379 CYP2J2P51589 502 aa7.23□□□□□ -1.25
VPS52-219ENST00000493379 CLCN4P51793 760 aa7.23□□□□□ -1.25
VPS52-219ENST00000493379 VAMP7P51809 220 aa7.23□□□□□ -1.25
VPS52-219ENST00000493379 NLRP12P59046 1061 aa7.23□□□□□ -1.25
VPS52-219ENST00000493379 SPAG1Q07617 926 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms