RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 SCLT1Q96NL6 688 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 SERPINB12Q96P63 405 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 APBA2Q99767 749 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 DNAI2Q9GZS0 605 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 PRO3102Q9H379 93 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 ASNSD1Q9NWL6 643 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 FLRT1Q9NZU1 646 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 HMGXB4Q9UGU5 601 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 ASIC3Q9UHC3 531 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 ANAPC5Q9UJX4 755 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 USTQ9Y2C2 406 aa11.29□□□□□ -0.6
USP4-214ENST00000491791 FAM170AA1A519 330 aa11.28□□□□□ -0.6
USP4-214ENST00000491791 ERICH4A6NGS2 130 aa11.28□□□□□ -0.6
USP4-214ENST00000491791 NPTXRO95502 500 aa11.28□□□□□ -0.6
USP4-214ENST00000491791 TRUB2O95900 331 aaKnown RBP11.28□□□□□ -0.6
USP4-214ENST00000491791 KDELR1P24390 212 aa11.28□□□□□ -0.6
USP4-214ENST00000491791 SSTR3P32745 418 aaPredicted RBP11.28□□□□□ -0.6
USP4-214ENST00000491791 MMP13P45452 471 aa11.28□□□□□ -0.6
USP4-214ENST00000491791 ITGA8P53708 1063 aa11.28□□□□□ -0.6
USP4-214ENST00000491791 IFFO1Q0D2I5 559 aa11.28□□□□□ -0.6
USP4-214ENST00000491791 HIC1Q14526 733 aa11.28□□□□□ -0.6
USP4-214ENST00000491791 MORF4L2Q15014 288 aa11.28□□□□□ -0.6
USP4-214ENST00000491791 RASA2Q15283 850 aa11.28□□□□□ -0.6
USP4-214ENST00000491791 CYP4A22Q5TCH4 519 aa11.28□□□□□ -0.6
USP4-214ENST00000491791 KCTD16Q68DU8 428 aa11.28□□□□□ -0.6
USP4-214ENST00000491791 TAF2Q6P1X5 1199 aa11.28□□□□□ -0.6
USP4-214ENST00000491791 TBCBQ99426 244 aa11.28□□□□□ -0.6
USP4-214ENST00000491791 HEMGNQ9BXL5 484 aa11.28□□□□□ -0.6
USP4-214ENST00000491791 AP5M1Q9H0R1 490 aa11.28□□□□□ -0.6
USP4-214ENST00000491791 UPF3AQ9H1J1 476 aaKnown RBP11.28□□□□□ -0.6
USP4-214ENST00000491791 ADAM7Q9H2U9 754 aa11.28□□□□□ -0.6
USP4-214ENST00000491791 CCDC134Q9H6E4 229 aa11.28□□□□□ -0.6
USP4-214ENST00000491791 RSAD1Q9HA92 442 aa11.28□□□□□ -0.6
USP4-214ENST00000491791 PPCSQ9HAB8 311 aa11.28□□□□□ -0.6
USP4-214ENST00000491791 PRDM16Q9HAZ2 1276 aa11.28□□□□□ -0.6
USP4-214ENST00000491791 PCDH9Q9HC56 1237 aa11.28□□□□□ -0.6
USP4-214ENST00000491791 SNTG2Q9NY99 539 aa11.28□□□□□ -0.6
USP4-214ENST00000491791 GTF2IRD1Q9UHL9 959 aa11.28□□□□□ -0.6
USP4-214ENST00000491791 LGALS13Q9UHV8 139 aa11.28□□□□□ -0.6
USP4-214ENST00000491791 TSPAN16Q9UKR8 245 aa11.28□□□□□ -0.6
USP4-214ENST00000491791 ATXN2Q99700 1313 aaKnown RBP11.28□□□□□ -0.6
USP4-214ENST00000491791 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.27□□□□□ -0.61
USP4-214ENST00000491791 SMIM28A0A1B0GU29 152 aa11.27□□□□□ -0.61
USP4-214ENST00000491791 M0QYV0 167 aa11.27□□□□□ -0.61
USP4-214ENST00000491791 DNALI1O14645 258 aaPredicted RBP11.27□□□□□ -0.61
USP4-214ENST00000491791 CAND2O75155 1236 aa11.27□□□□□ -0.61
USP4-214ENST00000491791 DUSP11O75319 330 aaKnown RBP11.27□□□□□ -0.61
USP4-214ENST00000491791 RNF8O76064 485 aa11.27□□□□□ -0.61
USP4-214ENST00000491791 SHBGP04278 402 aa11.27□□□□□ -0.61
USP4-214ENST00000491791 TSHRP16473 764 aa11.27□□□□□ -0.61
USP4-214ENST00000491791 GPD1P21695 349 aa11.27□□□□□ -0.61
USP4-214ENST00000491791 IL1R2P27930 398 aa11.27□□□□□ -0.61
USP4-214ENST00000491791 LRPAP1P30533 357 aa11.27□□□□□ -0.61
USP4-214ENST00000491791 ADCY8P40145 1251 aa11.27□□□□□ -0.61
USP4-214ENST00000491791 PTPN9P43378 593 aa11.27□□□□□ -0.61
USP4-214ENST00000491791 CDR1P51861 262 aa11.27□□□□□ -0.61
USP4-214ENST00000491791 PURAQ00577 322 aaKnown RBP11.27□□□□□ -0.61
USP4-214ENST00000491791 SNX1Q13596 522 aa11.27□□□□□ -0.61
USP4-214ENST00000491791 PTGISQ16647 500 aa11.27□□□□□ -0.61
USP4-214ENST00000491791 BOLA3Q53S33 107 aa11.27□□□□□ -0.61
USP4-214ENST00000491791 DAB2IPQ5VWQ8 1189 aa11.27□□□□□ -0.61
USP4-214ENST00000491791 TXNRD3NBQ6F5E7 133 aa11.27□□□□□ -0.61
USP4-214ENST00000491791 CYP4V2Q6ZWL3 525 aaPredicted RBP11.27□□□□□ -0.61
USP4-214ENST00000491791 PCGF5Q86SE9 256 aa11.27□□□□□ -0.61
USP4-214ENST00000491791 CENPIQ92674 756 aaPredicted RBP11.27□□□□□ -0.61
USP4-214ENST00000491791 KHSRPQ92945 711 aaKnown RBP eCLIP11.27□□□□□ -0.61
USP4-214ENST00000491791 ZNF560Q96MR9 790 aa11.27□□□□□ -0.61
USP4-214ENST00000491791 EIF2AQ9BY44 585 aaKnown RBP11.27□□□□□ -0.61
USP4-214ENST00000491791 CDC42EP4Q9H3Q1 356 aaKnown RBP11.27□□□□□ -0.61
USP4-214ENST00000491791 CDHR5Q9HBB8 845 aa11.27□□□□□ -0.61
USP4-214ENST00000491791 FETUBQ9UGM5 382 aa11.27□□□□□ -0.61
USP4-214ENST00000491791 DNPEPQ9ULA0 475 aa11.27□□□□□ -0.61
USP4-214ENST00000491791 NOVA2Q9UNW9 492 aaKnown RBP11.27□□□□□ -0.61
USP4-214ENST00000491791 SHOC2Q9UQ13 582 aa11.27□□□□□ -0.61
USP4-214ENST00000491791 LRRD1A4D1F6 860 aa11.26□□□□□ -0.61
USP4-214ENST00000491791 C5orf60A6NFR6 353 aa11.26□□□□□ -0.61
USP4-214ENST00000491791 RASGRF2O14827 1237 aa11.26□□□□□ -0.61
USP4-214ENST00000491791 MDM4O15151 490 aa11.26□□□□□ -0.61
USP4-214ENST00000491791 RECQL4O94761 1208 aa11.26□□□□□ -0.61
USP4-214ENST00000491791 KRT10P13645 584 aa11.26□□□□□ -0.61
USP4-214ENST00000491791 MIPP30301 263 aa11.26□□□□□ -0.61
USP4-214ENST00000491791 GJA9P57773 515 aa11.26□□□□□ -0.61
USP4-214ENST00000491791 MAGOHP61326 146 aaKnown RBP11.26□□□□□ -0.61
USP4-214ENST00000491791 SLC6A3Q01959 620 aa11.26□□□□□ -0.61
USP4-214ENST00000491791 AUHQ13825 339 aaKnown RBP11.26□□□□□ -0.61
USP4-214ENST00000491791 TFDP2Q14188 446 aa11.26□□□□□ -0.61
USP4-214ENST00000491791 STAT4Q14765 748 aa11.26□□□□□ -0.61
USP4-214ENST00000491791 PDK2Q15119 407 aa11.26□□□□□ -0.61
USP4-214ENST00000491791 SOWAHAQ2M3V2 549 aa11.26□□□□□ -0.61
USP4-214ENST00000491791 PRAMEF19Q5SWL8 479 aa11.26□□□□□ -0.61
USP4-214ENST00000491791 SESTD1Q86VW0 696 aa11.26□□□□□ -0.61
USP4-214ENST00000491791 TDRPQ86YL5 185 aa11.26□□□□□ -0.61
USP4-214ENST00000491791 C7orf61Q8IZ16 206 aa11.26□□□□□ -0.61
USP4-214ENST00000491791 RIBC1Q8N443 379 aaPredicted RBP11.26□□□□□ -0.61
USP4-214ENST00000491791 TOP6BLQ8N6T0 577 aa11.26□□□□□ -0.61
USP4-214ENST00000491791 ANKRD52Q8NB46 1076 aa11.26□□□□□ -0.61
USP4-214ENST00000491791 DNAJB3Q8WWF6 145 aa11.26□□□□□ -0.61
USP4-214ENST00000491791 HSFY1Q96LI6 401 aa11.26□□□□□ -0.61
USP4-214ENST00000491791 TTC25Q96NG3 672 aa11.26□□□□□ -0.61
USP4-214ENST00000491791 OSMRQ99650 979 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms