RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 OLFM2O95897 454 aa16.46■□□□□ 0.23
MCF2L-228ENST00000487354 ENGP17813 658 aa16.46■□□□□ 0.23
MCF2L-228ENST00000487354 MAGEA11P43364 429 aa16.46■□□□□ 0.23
MCF2L-228ENST00000487354 KIR2DL1P43626 348 aaPredicted RBP16.46■□□□□ 0.23
MCF2L-228ENST00000487354 SLC6A11P48066 632 aa16.46■□□□□ 0.23
MCF2L-228ENST00000487354 SEMA3BQ13214 749 aa16.46■□□□□ 0.23
MCF2L-228ENST00000487354 SOWAHAQ2M3V2 549 aa16.46■□□□□ 0.23
MCF2L-228ENST00000487354 LRSAM1Q6UWE0 723 aa16.46■□□□□ 0.23
MCF2L-228ENST00000487354 ARMCX6Q7L4S7 300 aa16.46■□□□□ 0.23
MCF2L-228ENST00000487354 ZNF720Q7Z2F6 126 aa16.46■□□□□ 0.23
MCF2L-228ENST00000487354 SFR1Q86XK3 245 aa16.46■□□□□ 0.23
MCF2L-228ENST00000487354 TMEFF1Q8IYR6 380 aa16.46■□□□□ 0.23
MCF2L-228ENST00000487354 TMEM86AQ8N2M4 240 aa16.46■□□□□ 0.23
MCF2L-228ENST00000487354 PHTF2Q8N3S3 785 aa16.46■□□□□ 0.23
MCF2L-228ENST00000487354 LRRC52Q8N7C0 313 aa16.46■□□□□ 0.23
MCF2L-228ENST00000487354 KBTBD7Q8WVZ9 684 aa16.46■□□□□ 0.23
MCF2L-228ENST00000487354 FUBP3Q96I24 572 aaKnown RBP eCLIP16.46■□□□□ 0.23
MCF2L-228ENST00000487354 ZHX3Q9H4I2 956 aa16.46■□□□□ 0.23
MCF2L-228ENST00000487354 ZDHHC4Q9NPG8 344 aa16.46■□□□□ 0.23
MCF2L-228ENST00000487354 FSCN3Q9NQT6 498 aa16.46■□□□□ 0.23
MCF2L-228ENST00000487354 MSRB2Q9Y3D2 182 aa16.46■□□□□ 0.23
MCF2L-228ENST00000487354 IGSF10Q6WRI0 2623 aa16.45■□□□□ 0.22
MCF2L-228ENST00000487354 TBCAO75347 108 aaKnown RBP16.45■□□□□ 0.22
MCF2L-228ENST00000487354 HDCP19113 662 aa16.45■□□□□ 0.22
MCF2L-228ENST00000487354 ABCD1P33897 745 aa16.45■□□□□ 0.22
MCF2L-228ENST00000487354 MAPK8P45983 427 aa16.45■□□□□ 0.22
MCF2L-228ENST00000487354 FAM193AP78312 1265 aa16.45■□□□□ 0.22
MCF2L-228ENST00000487354 MRPS21P82921 87 aaKnown RBP16.45■□□□□ 0.22
MCF2L-228ENST00000487354 TFAMQ00059 246 aaKnown RBP16.45■□□□□ 0.22
MCF2L-228ENST00000487354 MYL7Q01449 175 aa16.45■□□□□ 0.22
MCF2L-228ENST00000487354 NR1H3Q13133 447 aa16.45■□□□□ 0.22
MCF2L-228ENST00000487354 KCNB1Q14721 858 aa16.45■□□□□ 0.22
MCF2L-228ENST00000487354 EMC10Q5UCC4 262 aa16.45■□□□□ 0.22
MCF2L-228ENST00000487354 MCTP1Q6DN14 999 aa16.45■□□□□ 0.22
MCF2L-228ENST00000487354 SLC23A3Q6PIS1 610 aa16.45■□□□□ 0.22
MCF2L-228ENST00000487354 FILIP1Q7Z7B0 1213 aa16.45■□□□□ 0.22
MCF2L-228ENST00000487354 SCN4BQ8IWT1 228 aa16.45■□□□□ 0.22
MCF2L-228ENST00000487354 ADGRF2Q8IZF7 708 aa16.45■□□□□ 0.22
MCF2L-228ENST00000487354 TXNDC5Q8NBS9 432 aaKnown RBP16.45■□□□□ 0.22
MCF2L-228ENST00000487354 SPATA18Q8TC71 538 aa16.45■□□□□ 0.22
MCF2L-228ENST00000487354 POMGNT1Q8WZA1 660 aa16.45■□□□□ 0.22
MCF2L-228ENST00000487354 SAAL1Q96ER3 474 aa16.45■□□□□ 0.22
MCF2L-228ENST00000487354 RNF38Q9H0F5 515 aa16.45■□□□□ 0.22
MCF2L-228ENST00000487354 CRTAC1Q9NQ79 661 aa16.45■□□□□ 0.22
MCF2L-228ENST00000487354 PILRBQ9UKJ0 227 aa16.45■□□□□ 0.22
MCF2L-228ENST00000487354 NME7Q9Y5B8 376 aa16.45■□□□□ 0.22
MCF2L-228ENST00000487354 PTPRJQ12913 1337 aa16.45■□□□□ 0.22
MCF2L-228ENST00000487354 PTPRBP23467 1997 aa16.44■□□□□ 0.22
MCF2L-228ENST00000487354 A0A0A0MRY4 1105 aa16.44■□□□□ 0.22
MCF2L-228ENST00000487354 UPK3BL1B0FP48 263 aa16.44■□□□□ 0.22
MCF2L-228ENST00000487354 UPK3BL2E5RIL1 263 aa16.44■□□□□ 0.22
MCF2L-228ENST00000487354 SCAMP3O14828 347 aaKnown RBP16.44■□□□□ 0.22
MCF2L-228ENST00000487354 HUS1O60921 280 aa16.44■□□□□ 0.22
MCF2L-228ENST00000487354 KLF8O95600 359 aaPredicted RBP16.44■□□□□ 0.22
MCF2L-228ENST00000487354 KRT18P05783 430 aaKnown RBP16.44■□□□□ 0.22
MCF2L-228ENST00000487354 LMO2P25791 158 aa16.44■□□□□ 0.22
MCF2L-228ENST00000487354 CASP5P51878 434 aa16.44■□□□□ 0.22
MCF2L-228ENST00000487354 PSMC1P62191 440 aaKnown RBP16.44■□□□□ 0.22
MCF2L-228ENST00000487354 SLC7A9P82251 487 aa16.44■□□□□ 0.22
MCF2L-228ENST00000487354 LMAN2Q12907 356 aa16.44■□□□□ 0.22
MCF2L-228ENST00000487354 DHCR24Q15392 516 aa16.44■□□□□ 0.22
MCF2L-228ENST00000487354 SPATA2LQ8IUW3 424 aaPredicted RBP16.44■□□□□ 0.22
MCF2L-228ENST00000487354 SYT12Q8IV01 421 aa16.44■□□□□ 0.22
MCF2L-228ENST00000487354 ADGRG2Q8IZP9 1017 aa16.44■□□□□ 0.22
MCF2L-228ENST00000487354 TOP6BLQ8N6T0 577 aa16.44■□□□□ 0.22
MCF2L-228ENST00000487354 CCDC26Q8TAB7 109 aa16.44■□□□□ 0.22
MCF2L-228ENST00000487354 LARP4BQ92615 738 aaKnown RBP16.44■□□□□ 0.22
MCF2L-228ENST00000487354 MYLPFQ96A32 169 aa16.44■□□□□ 0.22
MCF2L-228ENST00000487354 HVCN1Q96D96 273 aa16.44■□□□□ 0.22
MCF2L-228ENST00000487354 CALML4Q96GE6 196 aa16.44■□□□□ 0.22
MCF2L-228ENST00000487354 SPATA17Q96L03 361 aa16.44■□□□□ 0.22
MCF2L-228ENST00000487354 FAM213AQ9BRX8 229 aa16.44■□□□□ 0.22
MCF2L-228ENST00000487354 TTLL2Q9BWV7 592 aa16.44■□□□□ 0.22
MCF2L-228ENST00000487354 FGFBP2Q9BYJ0 223 aa16.44■□□□□ 0.22
MCF2L-228ENST00000487354 TMEM30AQ9NV96 361 aa16.44■□□□□ 0.22
MCF2L-228ENST00000487354 HCN2Q9UL51 889 aa16.44■□□□□ 0.22
MCF2L-228ENST00000487354 LHX6Q9UPM6 363 aa16.44■□□□□ 0.22
MCF2L-228ENST00000487354 SNX9Q9Y5X1 595 aa16.44■□□□□ 0.22
MCF2L-228ENST00000487354 FAM221BA6H8Z2 402 aa16.43■□□□□ 0.22
MCF2L-228ENST00000487354 ZNF840PA6NDX5 716 aa16.43■□□□□ 0.22
MCF2L-228ENST00000487354 OAS1P00973 400 aaKnown RBP16.43■□□□□ 0.22
MCF2L-228ENST00000487354 ITPKAP23677 461 aa16.43■□□□□ 0.22
MCF2L-228ENST00000487354 UBA7P41226 1012 aa16.43■□□□□ 0.22
MCF2L-228ENST00000487354 RHBDF2Q6PJF5 856 aa16.43■□□□□ 0.22
MCF2L-228ENST00000487354 LPCAT2Q7L5N7 544 aa16.43■□□□□ 0.22
MCF2L-228ENST00000487354 TTC30AQ86WT1 665 aa16.43■□□□□ 0.22
MCF2L-228ENST00000487354 KIAA1958Q8N8K9 716 aa16.43■□□□□ 0.22
MCF2L-228ENST00000487354 FSIP1Q8NA03 581 aa16.43■□□□□ 0.22
MCF2L-228ENST00000487354 WHAMMQ8TF30 809 aa16.43■□□□□ 0.22
MCF2L-228ENST00000487354 MTMR12Q9C0I1 747 aa16.43■□□□□ 0.22
MCF2L-228ENST00000487354 ITGA11Q9UKX5 1188 aa16.43■□□□□ 0.22
MCF2L-228ENST00000487354 KAT7O95251 611 aa16.42■□□□□ 0.22
MCF2L-228ENST00000487354 PFKLP17858 780 aa16.42■□□□□ 0.22
MCF2L-228ENST00000487354 TIE1P35590 1138 aa16.42■□□□□ 0.22
MCF2L-228ENST00000487354 EIF2DP41214 584 aaKnown RBP16.42■□□□□ 0.22
MCF2L-228ENST00000487354 LHX1P48742 406 aa16.42■□□□□ 0.22
MCF2L-228ENST00000487354 CACNA2D1P54289 1103 aa16.42■□□□□ 0.22
MCF2L-228ENST00000487354 SIM1P81133 766 aaPredicted RBP16.42■□□□□ 0.22
MCF2L-228ENST00000487354 USP49Q70CQ1 688 aa16.42■□□□□ 0.22
MCF2L-228ENST00000487354 DNAJC19Q96DA6 116 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms