RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 BTBD8Q5XKL5 378 aa8.71□□□□□ -1.02
USP54-211ENST00000474929 APOA5Q6Q788 366 aa8.71□□□□□ -1.02
USP54-211ENST00000474929 IGF2-ASQ6U949 168 aa8.71□□□□□ -1.02
USP54-211ENST00000474929 TTC16Q8NEE8 873 aa8.71□□□□□ -1.02
USP54-211ENST00000474929 RIN3Q8TB24 985 aa8.71□□□□□ -1.02
USP54-211ENST00000474929 SH3RF2Q8TEC5 729 aa8.71□□□□□ -1.02
USP54-211ENST00000474929 IPO4Q8TEX9 1081 aaKnown RBP8.71□□□□□ -1.02
USP54-211ENST00000474929 SKA1Q96BD8 255 aa8.71□□□□□ -1.02
USP54-211ENST00000474929 TRMT2BQ96GJ1 504 aaKnown RBP8.71□□□□□ -1.02
USP54-211ENST00000474929 ZFRQ96KR1 1074 aaKnown RBP8.71□□□□□ -1.02
USP54-211ENST00000474929 PCDHB6Q9Y5E3 794 aa8.71□□□□□ -1.02
USP54-211ENST00000474929 ITPR2Q14571 2701 aa8.71□□□□□ -1.02
USP54-211ENST00000474929 BOD1L1Q8NFC6 3051 aa8.7□□□□□ -1.02
USP54-211ENST00000474929 TBC1D3BA6NDS4 549 aa8.7□□□□□ -1.02
USP54-211ENST00000474929 METTL12A8MUP2 240 aa8.7□□□□□ -1.02
USP54-211ENST00000474929 GFRA2O00451 464 aa8.7□□□□□ -1.02
USP54-211ENST00000474929 ZBTB43O43298 467 aa8.7□□□□□ -1.02
USP54-211ENST00000474929 LYPLA2O95372 231 aa8.7□□□□□ -1.02
USP54-211ENST00000474929 ADH5P11766 374 aa8.7□□□□□ -1.02
USP54-211ENST00000474929 IGFBP6P24592 240 aaPredicted RBP8.7□□□□□ -1.02
USP54-211ENST00000474929 NMT1P30419 496 aaKnown RBP8.7□□□□□ -1.02
USP54-211ENST00000474929 HSPA4P34932 840 aa8.7□□□□□ -1.02
USP54-211ENST00000474929 NAMPTP43490 491 aa8.7□□□□□ -1.02
USP54-211ENST00000474929 AARSP49588 968 aaKnown RBP eCLIP8.7□□□□□ -1.02
USP54-211ENST00000474929 E2F1Q01094 437 aa8.7□□□□□ -1.02
USP54-211ENST00000474929 FUT2Q10981 343 aa8.7□□□□□ -1.02
USP54-211ENST00000474929 DMP1Q13316 513 aaPredicted RBP8.7□□□□□ -1.02
USP54-211ENST00000474929 STARD3Q14849 445 aa8.7□□□□□ -1.02
USP54-211ENST00000474929 E2F5Q15329 346 aa8.7□□□□□ -1.02
USP54-211ENST00000474929 ATF7IP2Q5U623 682 aa8.7□□□□□ -1.02
USP54-211ENST00000474929 DIEXFQ68CQ4 756 aaKnown RBP8.7□□□□□ -1.02
USP54-211ENST00000474929 KIAA1324Q6UXG2 1013 aaKnown RBP8.7□□□□□ -1.02
USP54-211ENST00000474929 ALKAL1Q6UXT8 129 aa8.7□□□□□ -1.02
USP54-211ENST00000474929 DSTYKQ6XUX3 929 aa8.7□□□□□ -1.02
USP54-211ENST00000474929 TMEM150AQ86TG1 271 aa8.7□□□□□ -1.02
USP54-211ENST00000474929 DDX42Q86XP3 938 aaKnown RBP eCLIP8.7□□□□□ -1.02
USP54-211ENST00000474929 CHPFQ8IZ52 775 aa8.7□□□□□ -1.02
USP54-211ENST00000474929 TTC9BQ8N6N2 239 aa8.7□□□□□ -1.02
USP54-211ENST00000474929 DEPTORQ8TB45 409 aa8.7□□□□□ -1.02
USP54-211ENST00000474929 TBCKQ8TEA7 893 aa8.7□□□□□ -1.02
USP54-211ENST00000474929 TOE1Q96GM8 510 aaKnown RBP8.7□□□□□ -1.02
USP54-211ENST00000474929 ACAP3Q96P50 834 aa8.7□□□□□ -1.02
USP54-211ENST00000474929 NAP1L4Q99733 375 aaKnown RBP8.7□□□□□ -1.02
USP54-211ENST00000474929 CXCL16Q9H2A7 254 aa8.7□□□□□ -1.02
USP54-211ENST00000474929 RPF1Q9H9Y2 349 aaKnown RBP8.7□□□□□ -1.02
USP54-211ENST00000474929 TRPC7Q9HCX4 862 aa8.7□□□□□ -1.02
USP54-211ENST00000474929 WSB2Q9NYS7 404 aaPredicted RBP8.7□□□□□ -1.02
USP54-211ENST00000474929 DDX25Q9UHL0 483 aaKnown RBP8.7□□□□□ -1.02
USP54-211ENST00000474929 ANKRD6Q9Y2G4 727 aa8.7□□□□□ -1.02
USP54-211ENST00000474929 MYLKQ15746 1914 aa8.7□□□□□ -1.02
USP54-211ENST00000474929 TRIP11Q15643 1979 aa8.7□□□□□ -1.02
USP54-211ENST00000474929 CITO14578 2027 aa8.7□□□□□ -1.02
USP54-211ENST00000474929 A0A1W2PQF6 199 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 EML1O00423 815 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 SOAT2O75908 522 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 GCFC2P16383 781 aaKnown RBP8.69□□□□□ -1.02
USP54-211ENST00000474929 ABCB4P21439 1286 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 TNFRSF8P28908 595 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 LRPAP1P30533 357 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 LSSP48449 732 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 GABREP78334 506 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 FOXK1P85037 733 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 BNC1Q01954 994 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 AKAP17AQ02040 695 aaKnown RBP8.69□□□□□ -1.02
USP54-211ENST00000474929 KDSRQ06136 332 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 DHCR24Q15392 516 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 KIF19Q2TAC6 998 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 SLC39A12Q504Y0 691 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 ADAT2Q7Z6V5 191 aaKnown RBP8.69□□□□□ -1.02
USP54-211ENST00000474929 TICAM1Q8IUC6 712 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 TERB1Q8NA31 727 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 HPS3Q969F9 1004 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 GJA10Q969M2 543 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 OTUB2Q96DC9 234 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 MOCOSQ96EN8 888 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 MRGPRX1Q96LB2 322 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 GABRG3Q99928 467 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 GPR174Q9BXC1 333 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 CCDC113Q9H0I3 377 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 OSBPL3Q9H4L5 887 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 POLR1BQ9H9Y6 1135 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 USP36Q9P275 1121 aaKnown RBP8.69□□□□□ -1.02
USP54-211ENST00000474929 WRAP73Q9P2S5 460 aaPredicted RBP8.69□□□□□ -1.02
USP54-211ENST00000474929 VAV3Q9UKW4 847 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 DSEQ9UL01 958 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 TNFSF13BQ9Y275 285 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 STARD13Q9Y3M8 1113 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 SNX11Q9Y5W9 270 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 POLQO75417 2590 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 ICE1Q9Y2F5 2266 aa8.69□□□□□ -1.02
USP54-211ENST00000474929 FBN3Q75N90 2809 aa8.68□□□□□ -1.02
USP54-211ENST00000474929 A0A1B0GTQ1 180 aa8.68□□□□□ -1.02
USP54-211ENST00000474929 GOLGA8AA7E2F4 631 aa8.68□□□□□ -1.02
USP54-211ENST00000474929 GOLGA8BA8MQT2 603 aa8.68□□□□□ -1.02
USP54-211ENST00000474929 HAX1O00165 279 aa8.68□□□□□ -1.02
USP54-211ENST00000474929 TDP2O95551 362 aa8.68□□□□□ -1.02
USP54-211ENST00000474929 ITGAVP06756 1048 aa8.68□□□□□ -1.02
USP54-211ENST00000474929 HAPLN1P10915 354 aaPredicted RBP8.68□□□□□ -1.02
USP54-211ENST00000474929 HMGA1P17096 107 aaKnown RBP8.68□□□□□ -1.02
USP54-211ENST00000474929 MLLT3P42568 568 aaPredicted RBP8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms