RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 LAIR1Q6GTX8 287 aa17.68■□□□□ 0.42
CCDC28B-204ENST00000469003 CPA6Q8N4T0 437 aa17.68■□□□□ 0.42
CCDC28B-204ENST00000469003 ARL14EPQ8N8R7 260 aaPredicted RBP17.68■□□□□ 0.42
CCDC28B-204ENST00000469003 PLEKHO2Q8TD55 490 aa17.68■□□□□ 0.42
CCDC28B-204ENST00000469003 OSCP1Q8WVF1 389 aa17.68■□□□□ 0.42
CCDC28B-204ENST00000469003 SYAP1Q96A49 352 aaPredicted RBP17.68■□□□□ 0.42
CCDC28B-204ENST00000469003 C8orf48Q96LL4 319 aa17.68■□□□□ 0.42
CCDC28B-204ENST00000469003 TTLL2Q9BWV7 592 aa17.68■□□□□ 0.42
CCDC28B-204ENST00000469003 XYLT2Q9H1B5 865 aa17.68■□□□□ 0.42
CCDC28B-204ENST00000469003 EXOC1Q9NV70 894 aa17.68■□□□□ 0.42
CCDC28B-204ENST00000469003 DUS2Q9NX74 493 aaKnown RBP17.68■□□□□ 0.42
CCDC28B-204ENST00000469003 USP25Q9UHP3 1055 aa17.68■□□□□ 0.42
CCDC28B-204ENST00000469003 HRO43593 1189 aa17.67■□□□□ 0.42
CCDC28B-204ENST00000469003 PHACTR2O75167 634 aa17.67■□□□□ 0.42
CCDC28B-204ENST00000469003 PFKFB1P16118 471 aa17.67■□□□□ 0.42
CCDC28B-204ENST00000469003 PTPN1P18031 435 aaKnown RBP17.67■□□□□ 0.42
CCDC28B-204ENST00000469003 HDCP19113 662 aa17.67■□□□□ 0.42
CCDC28B-204ENST00000469003 CMA1P23946 247 aa17.67■□□□□ 0.42
CCDC28B-204ENST00000469003 IFNAR2P48551 515 aa17.67■□□□□ 0.42
CCDC28B-204ENST00000469003 CASP4P49662 377 aa17.67■□□□□ 0.42
CCDC28B-204ENST00000469003 AP3M2P53677 418 aa17.67■□□□□ 0.42
CCDC28B-204ENST00000469003 USP46P62068 366 aa17.67■□□□□ 0.42
CCDC28B-204ENST00000469003 NOP14P78316 857 aaKnown RBP17.67■□□□□ 0.42
CCDC28B-204ENST00000469003 STK4Q13043 487 aa17.67■□□□□ 0.42
CCDC28B-204ENST00000469003 RSPO4Q2I0M5 234 aaPredicted RBP17.67■□□□□ 0.42
CCDC28B-204ENST00000469003 KMT5BQ4FZB7 885 aa17.67■□□□□ 0.42
CCDC28B-204ENST00000469003 PRR23BQ6ZRT6 265 aa17.67■□□□□ 0.42
CCDC28B-204ENST00000469003 KIAA0895Q8NCT3 520 aa17.67■□□□□ 0.42
CCDC28B-204ENST00000469003 PARD3BQ8TEW8 1205 aa17.67■□□□□ 0.42
CCDC28B-204ENST00000469003 TMEM174Q8WUU8 243 aa17.67■□□□□ 0.42
CCDC28B-204ENST00000469003 DPEP3Q9H4B8 488 aa17.67■□□□□ 0.42
CCDC28B-204ENST00000469003 ECT2Q9H8V3 914 aa17.67■□□□□ 0.42
CCDC28B-204ENST00000469003 VRTNQ9H8Y1 702 aa17.67■□□□□ 0.42
CCDC28B-204ENST00000469003 DMAC2Q9NW81 257 aa17.67■□□□□ 0.42
CCDC28B-204ENST00000469003 TRPM5Q9NZQ8 1165 aa17.67■□□□□ 0.42
CCDC28B-204ENST00000469003 NXF1Q9UBU9 619 aaKnown RBP17.67■□□□□ 0.42
CCDC28B-204ENST00000469003 ARHGAP26Q9UNA1 814 aa17.67■□□□□ 0.42
CCDC28B-204ENST00000469003 A0A1B0GVL5 298 aa17.66■□□□□ 0.42
CCDC28B-204ENST00000469003 F8VP50 259 aa17.66■□□□□ 0.42
CCDC28B-204ENST00000469003 ATG13O75143 517 aa17.66■□□□□ 0.42
CCDC28B-204ENST00000469003 MYL1P05976 194 aa17.66■□□□□ 0.42
CCDC28B-204ENST00000469003 TGM1P22735 817 aa17.66■□□□□ 0.42
CCDC28B-204ENST00000469003 GJA4P35212 333 aa17.66■□□□□ 0.42
CCDC28B-204ENST00000469003 PPP3CCP48454 512 aa17.66■□□□□ 0.42
CCDC28B-204ENST00000469003 CLDN10P78369 228 aa17.66■□□□□ 0.42
CCDC28B-204ENST00000469003 BIRC3Q13489 604 aa17.66■□□□□ 0.42
CCDC28B-204ENST00000469003 SIM2Q14190 667 aaPredicted RBP17.66■□□□□ 0.42
CCDC28B-204ENST00000469003 LPAL2Q16609 132 aa17.66■□□□□ 0.42
CCDC28B-204ENST00000469003 TDRD10Q5VZ19 366 aaKnown RBP17.66■□□□□ 0.42
CCDC28B-204ENST00000469003 HEATR6Q6AI08 1181 aaKnown RBP17.66■□□□□ 0.42
CCDC28B-204ENST00000469003 WDR5BQ86VZ2 330 aa17.66■□□□□ 0.42
CCDC28B-204ENST00000469003 SLC9A9Q8IVB4 645 aa17.66■□□□□ 0.42
CCDC28B-204ENST00000469003 B3GALNT2Q8NCR0 500 aa17.66■□□□□ 0.42
CCDC28B-204ENST00000469003 SH3RF2Q8TEC5 729 aa17.66■□□□□ 0.42
CCDC28B-204ENST00000469003 ATP2A3Q93084 1043 aa17.66■□□□□ 0.42
CCDC28B-204ENST00000469003 EXOC4Q96A65 974 aa17.66■□□□□ 0.42
CCDC28B-204ENST00000469003 ELOVL4Q9GZR5 314 aa17.66■□□□□ 0.42
CCDC28B-204ENST00000469003 WNT6Q9Y6F9 365 aa17.66■□□□□ 0.42
CCDC28B-204ENST00000469003 LRRIQ3A6PVS8 624 aaPredicted RBP17.65■□□□□ 0.42
CCDC28B-204ENST00000469003 A8MXQ7 604 aa17.65■□□□□ 0.42
CCDC28B-204ENST00000469003 EGFP01133 1207 aa17.65■□□□□ 0.42
CCDC28B-204ENST00000469003 DRD1P21728 446 aa17.65■□□□□ 0.42
CCDC28B-204ENST00000469003 GALK1P51570 392 aa17.65■□□□□ 0.42
CCDC28B-204ENST00000469003 ZNF699Q32M78 642 aa17.65■□□□□ 0.42
CCDC28B-204ENST00000469003 EML3Q32P44 896 aa17.65■□□□□ 0.42
CCDC28B-204ENST00000469003 PKN3Q6P5Z2 889 aa17.65■□□□□ 0.42
CCDC28B-204ENST00000469003 TTC16Q8NEE8 873 aa17.65■□□□□ 0.42
CCDC28B-204ENST00000469003 SPATA32Q96LK8 384 aa17.65■□□□□ 0.42
CCDC28B-204ENST00000469003 P2RY13Q9BPV8 354 aa17.65■□□□□ 0.42
CCDC28B-204ENST00000469003 B3GNT5Q9BYG0 378 aa17.65■□□□□ 0.42
CCDC28B-204ENST00000469003 KCTD10Q9H3F6 313 aa17.65■□□□□ 0.42
CCDC28B-204ENST00000469003 FBRSL1Q9HCM7 1045 aaKnown RBP17.65■□□□□ 0.42
CCDC28B-204ENST00000469003 USP18Q9UMW8 372 aa17.65■□□□□ 0.42
CCDC28B-204ENST00000469003 HPSEQ9Y251 543 aa17.65■□□□□ 0.42
CCDC28B-204ENST00000469003 ZNF840PA6NDX5 716 aa17.64■□□□□ 0.41
CCDC28B-204ENST00000469003 PRR5-ARHGAP8B1AHC4 643 aa17.64■□□□□ 0.41
CCDC28B-204ENST00000469003 PDXKO00764 312 aa17.64■□□□□ 0.41
CCDC28B-204ENST00000469003 C4BPAP04003 597 aaKnown RBP17.64■□□□□ 0.41
CCDC28B-204ENST00000469003 RETP07949 1114 aa17.64■□□□□ 0.41
CCDC28B-204ENST00000469003 SDHBP21912 280 aa17.64■□□□□ 0.41
CCDC28B-204ENST00000469003 CACNA2D1P54289 1103 aa17.64■□□□□ 0.41
CCDC28B-204ENST00000469003 KRT85P78386 507 aa17.64■□□□□ 0.41
CCDC28B-204ENST00000469003 ARHGAP8P85298 464 aa17.64■□□□□ 0.41
CCDC28B-204ENST00000469003 LMNB2Q03252 620 aa17.64■□□□□ 0.41
CCDC28B-204ENST00000469003 NR1H3Q13133 447 aa17.64■□□□□ 0.41
CCDC28B-204ENST00000469003 SRSF5Q13243 272 aaKnown RBP17.64■□□□□ 0.41
CCDC28B-204ENST00000469003 NCOA4Q13772 614 aa17.64■□□□□ 0.41
CCDC28B-204ENST00000469003 FBXO43Q4G163 708 aa17.64■□□□□ 0.41
CCDC28B-204ENST00000469003 ZNF667Q5HYK9 610 aa17.64■□□□□ 0.41
CCDC28B-204ENST00000469003 CD101Q93033 1021 aa17.64■□□□□ 0.41
CCDC28B-204ENST00000469003 ZNF518BQ9C0D4 1074 aa17.64■□□□□ 0.41
CCDC28B-204ENST00000469003 SMYD3Q9H7B4 428 aa17.64■□□□□ 0.41
CCDC28B-204ENST00000469003 PARD6AQ9NPB6 346 aa17.64■□□□□ 0.41
CCDC28B-204ENST00000469003 TMEM30AQ9NV96 361 aa17.64■□□□□ 0.41
CCDC28B-204ENST00000469003 MAP1BP46821 2468 aaKnown RBP17.64■□□□□ 0.41
CCDC28B-204ENST00000469003 CLDN5O00501 218 aa17.63■□□□□ 0.41
CCDC28B-204ENST00000469003 LRP3O75074 770 aa17.63■□□□□ 0.41
CCDC28B-204ENST00000469003 RNF40O75150 1001 aa17.63■□□□□ 0.41
CCDC28B-204ENST00000469003 VNN1O95497 513 aa17.63■□□□□ 0.41
CCDC28B-204ENST00000469003 NR3C1P04150 777 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms