RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 SLC20A1Q8WUM9 679 aa19.7■□□□□ 0.74
CCDC88B-204ENST00000463837 VCPIP1Q96JH7 1222 aa19.7■□□□□ 0.74
CCDC88B-204ENST00000463837 ATXN8OSP0DMR3 200 aa19.7■□□□□ 0.74
CCDC88B-204ENST00000463837 KRT72Q14CN4 511 aa19.7■□□□□ 0.74
CCDC88B-204ENST00000463837 CBWD2Q8IUF1 395 aa19.7■□□□□ 0.74
CCDC88B-204ENST00000463837 RBBP8Q99708 897 aa19.7■□□□□ 0.74
CCDC88B-204ENST00000463837 CASS4Q9NQ75 786 aa19.7■□□□□ 0.74
CCDC88B-204ENST00000463837 SLC39A10Q9ULF5 831 aa19.7■□□□□ 0.74
CCDC88B-204ENST00000463837 ACTL7BQ9Y614 415 aa19.7■□□□□ 0.74
CCDC88B-204ENST00000463837 PCNX4Q63HM2 1172 aa19.7■□□□□ 0.74
CCDC88B-204ENST00000463837 DNAAF5Q86Y56 855 aa19.7■□□□□ 0.74
CCDC88B-204ENST00000463837 GTF3C2Q8WUA4 911 aaPredicted RBP19.7■□□□□ 0.74
CCDC88B-204ENST00000463837 PNMA5Q96PV4 448 aa19.7■□□□□ 0.74
CCDC88B-204ENST00000463837 EHD4Q9H223 541 aa19.7■□□□□ 0.74
CCDC88B-204ENST00000463837 ATP11BQ9Y2G3 1177 aa19.7■□□□□ 0.74
CCDC88B-204ENST00000463837 CCDC159P0C7I6 412 aa19.7■□□□□ 0.74
CCDC88B-204ENST00000463837 ALADP13716 330 aa19.7■□□□□ 0.74
CCDC88B-204ENST00000463837 SERPINB1P30740 379 aa19.7■□□□□ 0.74
CCDC88B-204ENST00000463837 HMGCS2P54868 508 aa19.7■□□□□ 0.74
CCDC88B-204ENST00000463837 MFN1Q8IWA4 741 aa19.7■□□□□ 0.74
CCDC88B-204ENST00000463837 FAM151AQ8WW52 585 aa19.7■□□□□ 0.74
CCDC88B-204ENST00000463837 IL1RL2Q9HB29 575 aa19.7■□□□□ 0.74
CCDC88B-204ENST00000463837 NINJ2Q9NZG7 142 aa19.7■□□□□ 0.74
CCDC88B-204ENST00000463837 SOX13Q9UN79 622 aa19.7■□□□□ 0.74
CCDC88B-204ENST00000463837 DNAJC16Q9Y2G8 782 aa19.7■□□□□ 0.74
CCDC88B-204ENST00000463837 AGLP35573 1532 aa19.7■□□□□ 0.74
CCDC88B-204ENST00000463837 GOLGA7BQ2TAP0 167 aa19.69■□□□□ 0.74
CCDC88B-204ENST00000463837 MICALL2Q8IY33 904 aa19.69■□□□□ 0.74
CCDC88B-204ENST00000463837 RAET1EQ8TD07 263 aa19.69■□□□□ 0.74
CCDC88B-204ENST00000463837 PYGLP06737 847 aa19.69■□□□□ 0.74
CCDC88B-204ENST00000463837 ALDH5A1P51649 535 aaPredicted RBP19.69■□□□□ 0.74
CCDC88B-204ENST00000463837 MTFR1Q15390 333 aa19.69■□□□□ 0.74
CCDC88B-204ENST00000463837 EARS2Q5JPH6 523 aaKnown RBP19.69■□□□□ 0.74
CCDC88B-204ENST00000463837 USP33Q8TEY7 942 aa19.69■□□□□ 0.74
CCDC88B-204ENST00000463837 CGRRF1Q99675 332 aa19.69■□□□□ 0.74
CCDC88B-204ENST00000463837 TRAPPC9Q96Q05 1148 aa19.69■□□□□ 0.74
CCDC88B-204ENST00000463837 CATSPERBQ9H7T0 1116 aa19.69■□□□□ 0.74
CCDC88B-204ENST00000463837 AVENQ9NQS1 362 aaPredicted RBP19.69■□□□□ 0.74
CCDC88B-204ENST00000463837 NDFIP2Q9NV92 336 aa19.69■□□□□ 0.74
CCDC88B-204ENST00000463837 DDX3XO00571 662 aaKnown RBP eCLIP19.69■□□□□ 0.74
CCDC88B-204ENST00000463837 ANXA9O76027 345 aa19.69■□□□□ 0.74
CCDC88B-204ENST00000463837 BGNP21810 368 aa19.69■□□□□ 0.74
CCDC88B-204ENST00000463837 IFI35P80217 286 aaPredicted RBP19.69■□□□□ 0.74
CCDC88B-204ENST00000463837 ERMARDQ5T6L9 678 aa19.69■□□□□ 0.74
CCDC88B-204ENST00000463837 RMDN1Q96DB5 314 aa19.69■□□□□ 0.74
CCDC88B-204ENST00000463837 ZFRQ96KR1 1074 aaKnown RBP19.69■□□□□ 0.74
CCDC88B-204ENST00000463837 AFF4Q9UHB7 1163 aaKnown RBP19.69■□□□□ 0.74
CCDC88B-204ENST00000463837 FARP1Q9Y4F1 1045 aaPredicted RBP19.69■□□□□ 0.74
CCDC88B-204ENST00000463837 GOLGA8TH3BQL2 631 aa19.69■□□□□ 0.74
CCDC88B-204ENST00000463837 ZNF197O14709 1029 aa19.69■□□□□ 0.74
CCDC88B-204ENST00000463837 DMC1Q14565 340 aa19.69■□□□□ 0.74
CCDC88B-204ENST00000463837 APOPT1Q96IL0 206 aa19.69■□□□□ 0.74
CCDC88B-204ENST00000463837 PPLO60437 1756 aa19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 ZSCAN9O15535 394 aaPredicted RBP19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 VEPH1Q14D04 833 aa19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 R3HDM1Q15032 1099 aaKnown RBP19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 SEL1L3Q68CR1 1132 aa19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 PRR5LQ6MZQ0 368 aa19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 HOMEZQ8IX15 550 aa19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 WNK4Q96J92 1243 aa19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 CBWD1Q9BRT8 395 aa19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 SPON2Q9BUD6 331 aa19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 APPL1Q9UKG1 709 aa19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 STARD13Q9Y3M8 1113 aa19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 PDE2AO00408 941 aaPredicted RBP19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 RALBP11234 206 aa19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 AGAP9Q5VTM2 703 aa19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 PIDD1Q9HB75 910 aa19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 USP1O94782 785 aa19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 CYP24A1Q07973 514 aa19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 C2CD6Q53TS8 623 aa19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 SLC47A2Q86VL8 602 aa19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 MCOLN2Q8IZK6 566 aa19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 SLC35C1Q96A29 364 aa19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 OXNAD1Q96HP4 312 aaPredicted RBP19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 STK25O00506 426 aa19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 TAF1CQ15572 869 aaPredicted RBP19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 FAXCQ5TGI0 409 aa19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 LRRC74BQ6ZQY2 392 aa19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 CKAP2Q8WWK9 683 aa19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 TARS2Q9BW92 718 aaKnown RBP19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 MYLK2Q9H1R3 596 aa19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 LRRC4BQ9NT99 713 aa19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 CYP39A1Q9NYL5 469 aa19.68■□□□□ 0.74
CCDC88B-204ENST00000463837 SPATA31D1Q6ZQQ2 1576 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 CNTNAP4Q9C0A0 1308 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 VDRP11473 427 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 CHRNA5P30532 468 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 AMPD2Q01433 879 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 MTMR2Q13614 643 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 TRIM16LQ309B1 348 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 RNF43Q68DV7 783 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 FOXR2Q6PJQ5 311 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 ZNF786Q8N393 782 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 SHCBP1Q8NEM2 672 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 LRRC40Q9H9A6 602 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 SNX3O60493 162 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 TXNP10599 105 aaKnown RBP19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 PDPK2PQ6A1A2 396 aa19.67■□□□□ 0.74
CCDC88B-204ENST00000463837 PATL1Q86TB9 770 aaKnown RBP19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms