RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 ACTL9Q8TC94 416 aa13.02□□□□□ -0.33
HDAC4-208ENST00000463007 HSPH1Q92598 858 aa13.02□□□□□ -0.33
HDAC4-208ENST00000463007 USP6NLQ92738 828 aa13.02□□□□□ -0.33
HDAC4-208ENST00000463007 GPRC5DQ9NZD1 345 aa13.02□□□□□ -0.33
HDAC4-208ENST00000463007 SCOCQ9UIL1 159 aa13.02□□□□□ -0.33
HDAC4-208ENST00000463007 LRRC42Q9Y546 428 aa13.02□□□□□ -0.33
HDAC4-208ENST00000463007 A6NHS1 94 aa13.02□□□□□ -0.33
HDAC4-208ENST00000463007 CYB561D2O14569 222 aa13.02□□□□□ -0.33
HDAC4-208ENST00000463007 CST8O60676 142 aa13.02□□□□□ -0.33
HDAC4-208ENST00000463007 TOP3BO95985 862 aaKnown RBP13.02□□□□□ -0.33
HDAC4-208ENST00000463007 ARL2P36404 184 aa13.02□□□□□ -0.33
HDAC4-208ENST00000463007 ACVR2BQ13705 512 aa13.02□□□□□ -0.33
HDAC4-208ENST00000463007 BMPR2Q13873 1038 aa13.02□□□□□ -0.33
HDAC4-208ENST00000463007 RBBP5Q15291 538 aaKnown RBP13.02□□□□□ -0.33
HDAC4-208ENST00000463007 TARBP2Q15633 366 aaKnown RBP13.02□□□□□ -0.33
HDAC4-208ENST00000463007 BBOF1Q8ND07 529 aa13.02□□□□□ -0.33
HDAC4-208ENST00000463007 PPFIBP2Q8ND30 876 aa13.02□□□□□ -0.33
HDAC4-208ENST00000463007 DNERQ8NFT8 737 aa13.02□□□□□ -0.33
HDAC4-208ENST00000463007 PCYT2Q99447 389 aa13.02□□□□□ -0.33
HDAC4-208ENST00000463007 TRIM4Q9C037 500 aa13.02□□□□□ -0.33
HDAC4-208ENST00000463007 NMUR2Q9GZQ4 415 aa13.02□□□□□ -0.33
HDAC4-208ENST00000463007 SNCAIPQ9Y6H5 919 aa13.02□□□□□ -0.33
HDAC4-208ENST00000463007 ANK1P16157 1881 aa13.01□□□□□ -0.33
HDAC4-208ENST00000463007 MGAMO43451 1857 aa13.01□□□□□ -0.33
HDAC4-208ENST00000463007 GSC2O15499 205 aa13.01□□□□□ -0.33
HDAC4-208ENST00000463007 DKC1O60832 514 aaKnown RBP eCLIP13.01□□□□□ -0.338e-7■■■■■ 36
HDAC4-208ENST00000463007 ATP5HO75947 161 aa13.01□□□□□ -0.33
HDAC4-208ENST00000463007 TJP3O95049 919 aa13.01□□□□□ -0.33
HDAC4-208ENST00000463007 CD48P09326 243 aa13.01□□□□□ -0.33
HDAC4-208ENST00000463007 GEMIN4P57678 1058 aaKnown RBP13.01□□□□□ -0.33
HDAC4-208ENST00000463007 OTUD4Q01804 1114 aaKnown RBP13.01□□□□□ -0.33
HDAC4-208ENST00000463007 PSMD6Q15008 389 aa13.01□□□□□ -0.33
HDAC4-208ENST00000463007 PARP6Q2NL67 630 aa13.01□□□□□ -0.33
HDAC4-208ENST00000463007 XKR3Q5GH77 459 aa13.01□□□□□ -0.33
HDAC4-208ENST00000463007 TDRD10Q5VZ19 366 aaKnown RBP13.01□□□□□ -0.33
HDAC4-208ENST00000463007 LRRC74BQ6ZQY2 392 aa13.01□□□□□ -0.33
HDAC4-208ENST00000463007 PPM1NQ8N819 430 aa13.01□□□□□ -0.33
HDAC4-208ENST00000463007 ACAP3Q96P50 834 aa13.01□□□□□ -0.33
HDAC4-208ENST00000463007 NIFKQ9BYG3 293 aaKnown RBP13.01□□□□□ -0.33
HDAC4-208ENST00000463007 POLR3FQ9H1D9 316 aaPredicted RBP13.01□□□□□ -0.33
HDAC4-208ENST00000463007 PORCNQ9H237 461 aa13.01□□□□□ -0.33
HDAC4-208ENST00000463007 TAS2R1Q9NYW7 299 aa13.01□□□□□ -0.33
HDAC4-208ENST00000463007 KANSL3Q9P2N6 904 aa13.01□□□□□ -0.33
HDAC4-208ENST00000463007 ARHGAP42A6NI28 874 aa13.01□□□□□ -0.33
HDAC4-208ENST00000463007 FAM189A1O60320 539 aa13.01□□□□□ -0.33
HDAC4-208ENST00000463007 CCDC22O60826 627 aa13.01□□□□□ -0.33
HDAC4-208ENST00000463007 VHLP40337 213 aa13.01□□□□□ -0.33
HDAC4-208ENST00000463007 CACNA2D1P54289 1103 aa13.01□□□□□ -0.33
HDAC4-208ENST00000463007 CENPCQ03188 943 aa13.01□□□□□ -0.33
HDAC4-208ENST00000463007 ZACNQ401N2 412 aa13.01□□□□□ -0.33
HDAC4-208ENST00000463007 DNAJC24Q6P3W2 148 aa13.01□□□□□ -0.33
HDAC4-208ENST00000463007 ARID3BQ8IVW6 561 aaPredicted RBP13.01□□□□□ -0.33
HDAC4-208ENST00000463007 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.01□□□□□ -0.332e-6■■■■■ 180.2
HDAC4-208ENST00000463007 BTBD10Q9BSF8 475 aa13.01□□□□□ -0.33
HDAC4-208ENST00000463007 GJA3Q9Y6H8 435 aa13.01□□□□□ -0.33
HDAC4-208ENST00000463007 ZSWIM8A7E2V4 1837 aa13.01□□□□□ -0.33
HDAC4-208ENST00000463007 E5RJQ4 531 aa13□□□□□ -0.33
HDAC4-208ENST00000463007 EXTL3O43909 919 aa13□□□□□ -0.33
HDAC4-208ENST00000463007 USP2O75604 605 aaPredicted RBP13□□□□□ -0.33
HDAC4-208ENST00000463007 STK10O94804 968 aaKnown RBP13□□□□□ -0.33
HDAC4-208ENST00000463007 VNN1O95497 513 aa13□□□□□ -0.33
HDAC4-208ENST00000463007 C4BPAP04003 597 aaKnown RBP13□□□□□ -0.33
HDAC4-208ENST00000463007 ACO1P21399 889 aaKnown RBP13□□□□□ -0.33
HDAC4-208ENST00000463007 SKIV2L2P42285 1042 aaKnown RBP13□□□□□ -0.33
HDAC4-208ENST00000463007 MRPS35P82673 323 aaKnown RBP13□□□□□ -0.33
HDAC4-208ENST00000463007 OGDHQ02218 1023 aa13□□□□□ -0.33
HDAC4-208ENST00000463007 EMC2Q15006 297 aa13□□□□□ -0.33
HDAC4-208ENST00000463007 TAF5Q15542 800 aa13□□□□□ -0.33
HDAC4-208ENST00000463007 LBX2Q6XYB7 198 aa13□□□□□ -0.33
HDAC4-208ENST00000463007 FEZF2Q8TBJ5 459 aa13□□□□□ -0.33
HDAC4-208ENST00000463007 NSL1Q96IY1 281 aa13□□□□□ -0.33
HDAC4-208ENST00000463007 SLITRK1Q96PX8 696 aa13□□□□□ -0.33
HDAC4-208ENST00000463007 VCXQ9H320 206 aa13□□□□□ -0.33
HDAC4-208ENST00000463007 APOBEC3GQ9HC16 384 aaKnown RBP13□□□□□ -0.33
HDAC4-208ENST00000463007 GGA3Q9NZ52 723 aa13□□□□□ -0.33
HDAC4-208ENST00000463007 PACSIN3Q9UKS6 424 aa13□□□□□ -0.33
HDAC4-208ENST00000463007 SMG5Q9UPR3 1016 aaKnown RBP13□□□□□ -0.33
HDAC4-208ENST00000463007 CNTN6Q9UQ52 1028 aa13□□□□□ -0.33
HDAC4-208ENST00000463007 CLUHO75153 1309 aa13□□□□□ -0.33
HDAC4-208ENST00000463007 TXNDC9O14530 226 aa13□□□□□ -0.33
HDAC4-208ENST00000463007 ABCD1P33897 745 aa13□□□□□ -0.33
HDAC4-208ENST00000463007 SLC1A1P43005 524 aa13□□□□□ -0.33
HDAC4-208ENST00000463007 EPHB1P54762 984 aa13□□□□□ -0.33
HDAC4-208ENST00000463007 ARL4CP56559 192 aa13□□□□□ -0.33
HDAC4-208ENST00000463007 FAAP100Q0VG06 881 aa13□□□□□ -0.33
HDAC4-208ENST00000463007 SYDE1Q6ZW31 735 aaPredicted RBP13□□□□□ -0.33
HDAC4-208ENST00000463007 MON1BQ7L1V2 547 aa13□□□□□ -0.33
HDAC4-208ENST00000463007 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13□□□□□ -0.33
HDAC4-208ENST00000463007 POU5F2Q8N7G0 328 aa13□□□□□ -0.33
HDAC4-208ENST00000463007 OR5B17Q8NGF7 314 aa13□□□□□ -0.33
HDAC4-208ENST00000463007 SLCO2A1Q92959 643 aa13□□□□□ -0.33
HDAC4-208ENST00000463007 SYNCQ9H7C4 482 aa13□□□□□ -0.33
HDAC4-208ENST00000463007 CYP4F11Q9HBI6 524 aa13□□□□□ -0.33
HDAC4-208ENST00000463007 MRPL47Q9HD33 250 aaKnown RBP13□□□□□ -0.33
HDAC4-208ENST00000463007 NXF1Q9UBU9 619 aaKnown RBP13□□□□□ -0.33
HDAC4-208ENST00000463007 FCHO1O14526 889 aa13□□□□□ -0.33
HDAC4-208ENST00000463007 TYROBPO43914 113 aa13□□□□□ -0.33
HDAC4-208ENST00000463007 SNUPNO95149 360 aaKnown RBP13□□□□□ -0.33
HDAC4-208ENST00000463007 SKIP12755 728 aa13□□□□□ -0.33
HDAC4-208ENST00000463007 INHBEP58166 350 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms