RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 PASD1Q8IV76 773 aa16.68■□□□□ 0.26
USP40-206ENST00000443711 MICALL1Q8N3F8 863 aa16.68■□□□□ 0.26
USP40-206ENST00000443711 ZMIZ2Q8NF64 920 aa16.68■□□□□ 0.26
USP40-206ENST00000443711 SECISBP2LQ93073 1101 aaKnown RBP16.68■□□□□ 0.26
USP40-206ENST00000443711 SPATA17Q96L03 361 aa16.68■□□□□ 0.26
USP40-206ENST00000443711 GUCD1Q96NT3 240 aa16.68■□□□□ 0.26
USP40-206ENST00000443711 KCNK16Q96T55 309 aa16.68■□□□□ 0.26
USP40-206ENST00000443711 SYT11Q9BT88 431 aa16.68■□□□□ 0.26
USP40-206ENST00000443711 PNPLA8Q9NP80 782 aa16.68■□□□□ 0.26
USP40-206ENST00000443711 TMEM30AQ9NV96 361 aa16.68■□□□□ 0.26
USP40-206ENST00000443711 SEPT11Q9NVA2 429 aaKnown RBP16.68■□□□□ 0.26
USP40-206ENST00000443711 DZANK1Q9NVP4 752 aa16.68■□□□□ 0.26
USP40-206ENST00000443711 ARHGAP20Q9P2F6 1191 aa16.68■□□□□ 0.26
USP40-206ENST00000443711 SSU72P8A0A1W2PR75 194 aa16.67■□□□□ 0.26
USP40-206ENST00000443711 CYP1A1P04798 512 aaPredicted RBP16.67■□□□□ 0.26
USP40-206ENST00000443711 PLEKP08567 350 aaPredicted RBP16.67■□□□□ 0.26
USP40-206ENST00000443711 HNRNPA1P09651 372 aaKnown RBP eCLIP16.67■□□□□ 0.26
USP40-206ENST00000443711 FOSL2P15408 326 aa16.67■□□□□ 0.26
USP40-206ENST00000443711 HOXA9P31269 272 aa16.67■□□□□ 0.26
USP40-206ENST00000443711 CDH5P33151 784 aaPredicted RBP16.67■□□□□ 0.26
USP40-206ENST00000443711 EIF4A3P38919 411 aaKnown RBP16.67■□□□□ 0.26
USP40-206ENST00000443711 PLA2G4AP47712 749 aa16.67■□□□□ 0.26
USP40-206ENST00000443711 TWF1Q12792 350 aa16.67■□□□□ 0.26
USP40-206ENST00000443711 MAPK8IP2Q13387 824 aaPredicted RBP16.67■□□□□ 0.26
USP40-206ENST00000443711 VEPH1Q14D04 833 aa16.67■□□□□ 0.26
USP40-206ENST00000443711 CYP26C1Q6V0L0 522 aa16.67■□□□□ 0.26
USP40-206ENST00000443711 VN1R2Q8NFZ6 395 aa16.67■□□□□ 0.26
USP40-206ENST00000443711 STK32AQ8WU08 396 aa16.67■□□□□ 0.26
USP40-206ENST00000443711 SLC35F5Q8WV83 523 aa16.67■□□□□ 0.26
USP40-206ENST00000443711 NOX5Q96PH1 765 aa16.67■□□□□ 0.26
USP40-206ENST00000443711 CHP1Q99653 195 aa16.67■□□□□ 0.26
USP40-206ENST00000443711 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.67■□□□□ 0.26
USP40-206ENST00000443711 ZDHHC7Q9NXF8 308 aa16.67■□□□□ 0.26
USP40-206ENST00000443711 ASB3Q9Y575 518 aa16.67■□□□□ 0.26
USP40-206ENST00000443711 ATF6P18850 670 aa16.66■□□□□ 0.26
USP40-206ENST00000443711 FECHP22830 423 aa16.66■□□□□ 0.26
USP40-206ENST00000443711 ACADSBP45954 432 aa16.66■□□□□ 0.26
USP40-206ENST00000443711 GPR15P49685 360 aa16.66■□□□□ 0.26
USP40-206ENST00000443711 SNX16P57768 344 aa16.66■□□□□ 0.26
USP40-206ENST00000443711 RBM10P98175 930 aaKnown RBP16.66■□□□□ 0.26
USP40-206ENST00000443711 CCDC173Q0VFZ6 552 aa16.66■□□□□ 0.26
USP40-206ENST00000443711 CLEC16AQ2KHT3 1053 aa16.66■□□□□ 0.26
USP40-206ENST00000443711 SDHAF4Q5VUM1 108 aa16.66■□□□□ 0.26
USP40-206ENST00000443711 PIGZQ86VD9 579 aa16.66■□□□□ 0.26
USP40-206ENST00000443711 TMTC1Q8IUR5 882 aa16.66■□□□□ 0.26
USP40-206ENST00000443711 ELMOD1Q8N336 334 aa16.66■□□□□ 0.26
USP40-206ENST00000443711 WDTC1Q8N5D0 677 aa16.66■□□□□ 0.26
USP40-206ENST00000443711 SLC30A5Q8TAD4 765 aa16.66■□□□□ 0.26
USP40-206ENST00000443711 GIPC2Q8TF65 315 aa16.66■□□□□ 0.26
USP40-206ENST00000443711 KCTD13Q8WZ19 329 aa16.66■□□□□ 0.26
USP40-206ENST00000443711 HSFY1Q96LI6 401 aa16.66■□□□□ 0.26
USP40-206ENST00000443711 CCDC42Q96M95 316 aa16.66■□□□□ 0.26
USP40-206ENST00000443711 PCDHB18PQ96TA0 734 aa16.66■□□□□ 0.26
USP40-206ENST00000443711 DEF6Q9H4E7 631 aa16.66■□□□□ 0.26
USP40-206ENST00000443711 NHEJ1Q9H9Q4 299 aaPredicted RBP16.66■□□□□ 0.26
USP40-206ENST00000443711 GREB1Q4ZG55 1949 aa16.66■□□□□ 0.26
USP40-206ENST00000443711 PATJQ8NI35 1801 aa16.66■□□□□ 0.26
USP40-206ENST00000443711 SLC38A8A6NNN8 435 aa16.65■□□□□ 0.26
USP40-206ENST00000443711 HHLA1C9JL84 531 aa16.65■□□□□ 0.26
USP40-206ENST00000443711 TULP2O00295 520 aa16.65■□□□□ 0.26
USP40-206ENST00000443711 DDX3XO00571 662 aaKnown RBP eCLIP16.65■□□□□ 0.26
USP40-206ENST00000443711 LINC01565O15544 149 aa16.65■□□□□ 0.26
USP40-206ENST00000443711 XYLBO75191 536 aa16.65■□□□□ 0.26
USP40-206ENST00000443711 RTN3O95197 1032 aaPredicted RBP16.65■□□□□ 0.26
USP40-206ENST00000443711 GLP2RO95838 553 aa16.65■□□□□ 0.26
USP40-206ENST00000443711 PTMAP06454 111 aaKnown RBP16.65■□□□□ 0.26
USP40-206ENST00000443711 CSH1P0DML2 217 aa16.65■□□□□ 0.26
USP40-206ENST00000443711 CSH2P0DML3 217 aa16.65■□□□□ 0.26
USP40-206ENST00000443711 RGS7P49802 495 aa16.65■□□□□ 0.26
USP40-206ENST00000443711 NOMO3P69849 1222 aa16.65■□□□□ 0.26
USP40-206ENST00000443711 TAF12Q16514 161 aa16.65■□□□□ 0.26
USP40-206ENST00000443711 NAA35Q5VZE5 725 aa16.65■□□□□ 0.26
USP40-206ENST00000443711 PPP1R2P3Q6NXS1 205 aa16.65■□□□□ 0.26
USP40-206ENST00000443711 PMF1Q6P1K2 205 aa16.65■□□□□ 0.26
USP40-206ENST00000443711 ITIH5Q86UX2 942 aa16.65■□□□□ 0.26
USP40-206ENST00000443711 NUP93Q8N1F7 819 aa16.65■□□□□ 0.26
USP40-206ENST00000443711 MSANTD4Q8NCY6 345 aa16.65■□□□□ 0.26
USP40-206ENST00000443711 C1orf131Q8NDD1 294 aaKnown RBP16.65■□□□□ 0.26
USP40-206ENST00000443711 GPR152Q8TDT2 470 aa16.65■□□□□ 0.26
USP40-206ENST00000443711 ZNF512Q96ME7 567 aaPredicted RBP16.65■□□□□ 0.26
USP40-206ENST00000443711 BAG1Q99933 345 aaPredicted RBP16.65■□□□□ 0.26
USP40-206ENST00000443711 SLC4A5Q9BY07 1137 aa16.65■□□□□ 0.26
USP40-206ENST00000443711 PRKD2Q9BZL6 878 aa16.65■□□□□ 0.26
USP40-206ENST00000443711 SFXN1Q9H9B4 322 aa16.65■□□□□ 0.26
USP40-206ENST00000443711 LRRC4Q9HBW1 653 aa16.65■□□□□ 0.26
USP40-206ENST00000443711 CYLDQ9NQC7 956 aa16.65■□□□□ 0.26
USP40-206ENST00000443711 COMMD8Q9NX08 183 aa16.65■□□□□ 0.26
USP40-206ENST00000443711 EHD2Q9NZN4 543 aa16.65■□□□□ 0.26
USP40-206ENST00000443711 ADAMTS1Q9UHI8 967 aa16.65■□□□□ 0.26
USP40-206ENST00000443711 CYTH4Q9UIA0 394 aa16.65■□□□□ 0.26
USP40-206ENST00000443711 ZNF638Q14966 1978 aaKnown RBP16.64■□□□□ 0.25
USP40-206ENST00000443711 CCDC195A0A1B0GUA6 201 aa16.64■□□□□ 0.25
USP40-206ENST00000443711 TNFRSF10BO14763 440 aa16.64■□□□□ 0.25
USP40-206ENST00000443711 CCL16O15467 120 aa16.64■□□□□ 0.25
USP40-206ENST00000443711 AKR1B10O60218 316 aa16.64■□□□□ 0.25
USP40-206ENST00000443711 RFPL2O75678 378 aa16.64■□□□□ 0.25
USP40-206ENST00000443711 POU2F2P09086 479 aa16.64■□□□□ 0.25
USP40-206ENST00000443711 GZMAP12544 262 aa16.64■□□□□ 0.25
USP40-206ENST00000443711 UNGP13051 313 aaPredicted RBP16.64■□□□□ 0.25
USP40-206ENST00000443711 HOXB8P17481 243 aaPredicted RBP16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms