RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 OR2I1PQ8NGU4 316 aa4.48□□□□□ -1.69
HMGB3P20-201ENST00000417997 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.48□□□□□ -1.69
HMGB3P20-201ENST00000417997 NRG4Q8WWG1 115 aa4.48□□□□□ -1.69
HMGB3P20-201ENST00000417997 CASKIN2Q8WXE0 1202 aa4.48□□□□□ -1.69
HMGB3P20-201ENST00000417997 RAB24Q969Q5 203 aa4.48□□□□□ -1.69
HMGB3P20-201ENST00000417997 EVI5LQ96CN4 794 aa4.48□□□□□ -1.69
HMGB3P20-201ENST00000417997 CYFIP2Q96F07 1278 aa4.48□□□□□ -1.69
HMGB3P20-201ENST00000417997 BOLA2Q9H3K6 86 aa4.48□□□□□ -1.69
HMGB3P20-201ENST00000417997 MANSC1Q9H8J5 431 aa4.48□□□□□ -1.69
HMGB3P20-201ENST00000417997 GPR108Q9NPR9 543 aa4.48□□□□□ -1.69
HMGB3P20-201ENST00000417997 SYBUQ9NX95 663 aa4.48□□□□□ -1.69
HMGB3P20-201ENST00000417997 SLC5A4Q9NY91 659 aa4.48□□□□□ -1.69
HMGB3P20-201ENST00000417997 DKK2Q9UBU2 259 aa4.48□□□□□ -1.69
HMGB3P20-201ENST00000417997 SRP68Q9UHB9 627 aaKnown RBP4.48□□□□□ -1.69
HMGB3P20-201ENST00000417997 DBNLQ9UJU6 430 aaKnown RBP4.48□□□□□ -1.69
HMGB3P20-201ENST00000417997 EPN1Q9Y6I3 576 aaPredicted RBP4.48□□□□□ -1.69
HMGB3P20-201ENST00000417997 LRRC37AA6NMS7 1700 aa4.48□□□□□ -1.69
HMGB3P20-201ENST00000417997 COL11A2P13942 1736 aaPredicted RBP4.48□□□□□ -1.69
HMGB3P20-201ENST00000417997 NRXN2Q9P2S2 1712 aa4.48□□□□□ -1.69
HMGB3P20-201ENST00000417997 RTL9Q8NET4 1388 aa4.48□□□□□ -1.69
HMGB3P20-201ENST00000417997 LAMA4Q16363 1823 aa4.48□□□□□ -1.69
HMGB3P20-201ENST00000417997 CHD4Q14839 1912 aa4.48□□□□□ -1.69
HMGB3P20-201ENST00000417997 MROH5Q6ZUA9 1318 aa4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 RAD50Q92878 1312 aa4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 MYO5AQ9Y4I1 1855 aaKnown RBP4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 KIAA1551Q9HCM1 1747 aa4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 PRSS23O95084 383 aa4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 MT-CO1P00395 513 aa4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 CSF1RP07333 972 aa4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 ELANEP08246 267 aa4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 IFIT1P09914 478 aaKnown RBP4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 ALAS1P13196 640 aa4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 SLC5A1P13866 664 aa4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 DDCP20711 480 aa4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 FDXRP22570 491 aa4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 CHMLP26374 656 aa4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 CXCR5P32302 372 aa4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 ADRA1BP35368 520 aa4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 CXADRP78310 365 aa4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 ATP2B3Q16720 1220 aa4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 ERCC6LQ2NKX8 1250 aa4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 B3GNTL1Q67FW5 361 aaPredicted RBP4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 OTUD7BQ6GQQ9 843 aa4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 ATG9AQ7Z3C6 839 aa4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 RSPH3Q86UC2 560 aa4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 DDX42Q86XP3 938 aaKnown RBP eCLIP4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 ANKRD18AQ8IVF6 992 aa4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 ZGPATQ8N5A5 531 aaKnown RBP4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 CNBD1Q8NA66 436 aa4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 COQ10AQ96MF6 247 aa4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 PUS3Q9BZE2 481 aaKnown RBP4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 GSTO2Q9H4Y5 243 aa4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 SPC25Q9HBM1 224 aa4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 CASS4Q9NQ75 786 aa4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 MKS1Q9NXB0 559 aa4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 SLC23A1Q9UHI7 598 aa4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 SAP30BPQ9UHR5 308 aaKnown RBP4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 DUOX1Q9NRD9 1551 aa4.47□□□□□ -1.69
HMGB3P20-201ENST00000417997 AKAP11Q9UKA4 1901 aa4.46□□□□□ -1.69
HMGB3P20-201ENST00000417997 LAMB1P07942 1786 aa4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 DLEC1Q9Y238 1755 aa4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 COL4A1P02462 1669 aa4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 CDHR4A6H8M9 788 aa4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 AMY1AP04745 511 aa4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 HSP90AA1P07900 732 aaKnown RBP4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 EGR2P11161 476 aaPredicted RBP4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 CKBP12277 381 aa4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 POU3F3P20264 500 aaPredicted RBP4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 TGM1P22735 817 aa4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 GCSHP23434 173 aa4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 IARSP41252 1262 aaKnown RBP4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 KCNJ4P48050 445 aa4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 BLOC1S1P78537 153 aa4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 FOXI1Q12951 378 aa4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 MPP3Q13368 585 aa4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 MTM1Q13496 603 aa4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 PUM3Q15397 648 aaKnown RBP4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 EGFLAMQ63HQ2 1017 aa4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 CWC27Q6UX04 472 aaKnown RBP4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 SEM1Q6ZVN7 128 aa4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 SMIM5Q71RC9 77 aa4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 MIGA2Q7L4E1 593 aa4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 GPR149Q86SP6 731 aa4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 FITM2Q8N6M3 262 aa4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 TBC1D15Q8TC07 691 aa4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 LINC00476Q8WZB0 136 aa4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 MARS2Q96GW9 593 aaKnown RBP4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 Q96MF0 132 aa4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 RSAD1Q9HA92 442 aa4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 GALNT9Q9HCQ5 603 aa4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 TBCCD1Q9NVR7 557 aa4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 PAG1Q9NWQ8 432 aa4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 TFCP2L1Q9NZI6 479 aa4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 PTGFRNQ9P2B2 879 aa4.46□□□□□ -1.7
HMGB3P20-201ENST00000417997 CCDC78A2IDD5 438 aa4.45□□□□□ -1.7
HMGB3P20-201ENST00000417997 GOLIM4O00461 696 aa4.45□□□□□ -1.7
HMGB3P20-201ENST00000417997 EPB41L2O43491 1005 aaKnown RBP4.45□□□□□ -1.7
HMGB3P20-201ENST00000417997 XPOTO43592 962 aaKnown RBP4.45□□□□□ -1.7
HMGB3P20-201ENST00000417997 PDE8BO95263 885 aa4.45□□□□□ -1.7
HMGB3P20-201ENST00000417997 ESRRBO95718 433 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms