RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 SKA1Q96BD8 255 aa13.29□□□□□ -0.28
SHMT1-205ENST00000395684 FAM111AQ96PZ2 611 aa13.29□□□□□ -0.28
SHMT1-205ENST00000395684 CYTH2Q99418 400 aa13.29□□□□□ -0.28
SHMT1-205ENST00000395684 TCHPQ9BT92 498 aa13.29□□□□□ -0.28
SHMT1-205ENST00000395684 TMEM120AQ9BXJ8 343 aa13.29□□□□□ -0.28
SHMT1-205ENST00000395684 ASPAP45381 313 aa13.29□□□□□ -0.28
SHMT1-205ENST00000395684 BACE1P56817 501 aa13.29□□□□□ -0.28
SHMT1-205ENST00000395684 EIF3EP60228 445 aaKnown RBP13.29□□□□□ -0.28
SHMT1-205ENST00000395684 PTK7Q13308 1070 aa13.29□□□□□ -0.28
SHMT1-205ENST00000395684 GNPTABQ3T906 1256 aa13.29□□□□□ -0.28
SHMT1-205ENST00000395684 THNSL1Q8IYQ7 743 aa13.29□□□□□ -0.28
SHMT1-205ENST00000395684 TTC17Q96AE7 1141 aa13.29□□□□□ -0.28
SHMT1-205ENST00000395684 NSL1Q96IY1 281 aa13.29□□□□□ -0.28
SHMT1-205ENST00000395684 LBHD1Q9BQE6 289 aaPredicted RBP13.29□□□□□ -0.28
SHMT1-205ENST00000395684 NIFKQ9BYG3 293 aaKnown RBP13.29□□□□□ -0.28
SHMT1-205ENST00000395684 DPPA5A6NC42 116 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 MSCO60682 206 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 DNAJC6O75061 913 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 AVILO75366 819 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 PDHA1P08559 390 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 RBP3P10745 1247 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 PYGBP11216 843 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 CHRM1P11229 460 aaPredicted RBP13.28□□□□□ -0.28
SHMT1-205ENST00000395684 BGNP21810 368 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 AP3M2P53677 418 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 SESN3P58005 492 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 PSMC1P62191 440 aaKnown RBP13.28□□□□□ -0.28
SHMT1-205ENST00000395684 DUOXA2Q1HG44 320 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 ACSBG2Q5FVE4 666 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 NAIF1Q69YI7 327 aaPredicted RBP13.28□□□□□ -0.28
SHMT1-205ENST00000395684 RINLQ6ZS11 566 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 TTC7BQ86TV6 843 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 RFX6Q8HWS3 928 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 TTLL6Q8N841 843 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 KCTD6Q8NC69 237 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 DNAJC9Q8WXX5 260 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 CPXM1Q96SM3 734 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 FRMD8P1Q9BZ68 369 aaPredicted RBP13.28□□□□□ -0.28
SHMT1-205ENST00000395684 XYLT2Q9H1B5 865 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 STRIP2Q9ULQ0 834 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 KBTBD13C9JR72 458 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 GYG2O15488 501 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 TFAMQ00059 246 aaKnown RBP13.28□□□□□ -0.28
SHMT1-205ENST00000395684 CDK16Q00536 496 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 SLC18A2Q05940 514 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 TRPC3Q13507 836 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 KPNB1Q14974 876 aaKnown RBP13.28□□□□□ -0.28
SHMT1-205ENST00000395684 HADHQ16836 314 aaKnown RBP13.28□□□□□ -0.28
SHMT1-205ENST00000395684 CMPK2Q5EBM0 449 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 NPNTQ6UXI9 565 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 ZPBP2Q6X784 338 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 CHSY1Q86X52 802 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 SPATA18Q8TC71 538 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 SLC44A1Q8WWI5 657 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 PRPF31Q8WWY3 499 aaKnown RBP13.28□□□□□ -0.28
SHMT1-205ENST00000395684 PCYT2Q99447 389 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 TAS2R1Q9NYW7 299 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 CNTN3Q9P232 1028 aa13.28□□□□□ -0.28
SHMT1-205ENST00000395684 MTO1Q9Y2Z2 717 aaKnown RBP13.28□□□□□ -0.28
SHMT1-205ENST00000395684 IQANK1A0A1B0GTG1 560 aa13.27□□□□□ -0.28
SHMT1-205ENST00000395684 E5RJQ4 531 aa13.27□□□□□ -0.28
SHMT1-205ENST00000395684 APOC4-APOC2K7ER74 178 aa13.27□□□□□ -0.28
SHMT1-205ENST00000395684 TOM1L1O75674 476 aa13.27□□□□□ -0.28
SHMT1-205ENST00000395684 FAM155BO75949 473 aa13.27□□□□□ -0.28
SHMT1-205ENST00000395684 TGDSO95455 350 aa13.27□□□□□ -0.28
SHMT1-205ENST00000395684 LMNAP02545 664 aaKnown RBP13.27□□□□□ -0.28
SHMT1-205ENST00000395684 APOC2P02655 101 aa13.27□□□□□ -0.28
SHMT1-205ENST00000395684 CD19P15391 556 aa13.27□□□□□ -0.28
SHMT1-205ENST00000395684 ACADSP16219 412 aa13.27□□□□□ -0.28
SHMT1-205ENST00000395684 RAP1GAPP47736 663 aa13.27□□□□□ -0.28
SHMT1-205ENST00000395684 TUBP50607 506 aa13.27□□□□□ -0.28
SHMT1-205ENST00000395684 ZNF200P98182 395 aaPredicted RBP13.27□□□□□ -0.28
SHMT1-205ENST00000395684 ORC1Q13415 861 aa13.27□□□□□ -0.28
SHMT1-205ENST00000395684 TARBP2Q15633 366 aaKnown RBP13.27□□□□□ -0.28
SHMT1-205ENST00000395684 CDHR3Q6ZTQ4 885 aa13.27□□□□□ -0.28
SHMT1-205ENST00000395684 CMASQ8NFW8 434 aaPredicted RBP13.27□□□□□ -0.28
SHMT1-205ENST00000395684 FNIP1Q8TF40 1166 aa13.27□□□□□ -0.28
SHMT1-205ENST00000395684 NRG4Q8WWG1 115 aa13.27□□□□□ -0.28
SHMT1-205ENST00000395684 HSPH1Q92598 858 aa13.27□□□□□ -0.28
SHMT1-205ENST00000395684 APOPT1Q96IL0 206 aa13.27□□□□□ -0.28
SHMT1-205ENST00000395684 METTL5Q9NRN9 209 aaKnown RBP13.27□□□□□ -0.28
SHMT1-205ENST00000395684 NMRK1Q9NWW6 199 aa13.27□□□□□ -0.28
SHMT1-205ENST00000395684 NXF1Q9UBU9 619 aaKnown RBP13.27□□□□□ -0.28
SHMT1-205ENST00000395684 ADAMTS5Q9UNA0 930 aa13.27□□□□□ -0.28
SHMT1-205ENST00000395684 POLIQ9UNA4 740 aa13.27□□□□□ -0.28
SHMT1-205ENST00000395684 TEX264Q9Y6I9 313 aa13.27□□□□□ -0.28
SHMT1-205ENST00000395684 FAM237BA0A1B0GVD1 139 aa13.27□□□□□ -0.29
SHMT1-205ENST00000395684 KRT36O76013 467 aa13.27□□□□□ -0.29
SHMT1-205ENST00000395684 ERBB2P04626 1255 aa13.27□□□□□ -0.29
SHMT1-205ENST00000395684 TSHRP16473 764 aa13.27□□□□□ -0.29
SHMT1-205ENST00000395684 MIPP30301 263 aa13.27□□□□□ -0.29
SHMT1-205ENST00000395684 POLR2BP30876 1174 aaKnown RBP13.27□□□□□ -0.29
SHMT1-205ENST00000395684 PEX19P40855 299 aa13.27□□□□□ -0.29
SHMT1-205ENST00000395684 YWHAEP62258 255 aaKnown RBP13.27□□□□□ -0.29
SHMT1-205ENST00000395684 ZBTB16Q05516 673 aa13.27□□□□□ -0.29
SHMT1-205ENST00000395684 MMRN1Q13201 1228 aa13.27□□□□□ -0.29
SHMT1-205ENST00000395684 GRM1Q13255 1194 aa13.27□□□□□ -0.29
SHMT1-205ENST00000395684 RCN1Q15293 331 aa13.27□□□□□ -0.29
SHMT1-205ENST00000395684 ZNF699Q32M78 642 aa13.27□□□□□ -0.29
SHMT1-205ENST00000395684 PRPF39Q86UA1 669 aaKnown RBP13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms