RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 CHSY1Q86X52 802 aa17.14■□□□□ 0.33
SDC4-201ENST00000372733 KBTBD2Q8IY47 623 aa17.14■□□□□ 0.33
SDC4-201ENST00000372733 PDCD7Q8N8D1 485 aaKnown RBP17.14■□□□□ 0.33
SDC4-201ENST00000372733 NIPA2Q8N8Q9 360 aa17.14■□□□□ 0.33
SDC4-201ENST00000372733 OXNAD1Q96HP4 312 aaPredicted RBP17.14■□□□□ 0.33
SDC4-201ENST00000372733 CYTH2Q99418 400 aa17.14■□□□□ 0.33
SDC4-201ENST00000372733 JPH1Q9HDC5 661 aaPredicted RBP17.14■□□□□ 0.33
SDC4-201ENST00000372733 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.14■□□□□ 0.33
SDC4-201ENST00000372733 STAM2O75886 525 aa17.14■□□□□ 0.33
SDC4-201ENST00000372733 ACTR2P61160 394 aa17.14■□□□□ 0.33
SDC4-201ENST00000372733 THOC5Q13769 683 aaKnown RBP17.14■□□□□ 0.33
SDC4-201ENST00000372733 MDH1BQ5I0G3 518 aa17.14■□□□□ 0.33
SDC4-201ENST00000372733 STYK1Q6J9G0 422 aa17.14■□□□□ 0.33
SDC4-201ENST00000372733 SLC30A9Q6PML9 568 aa17.14■□□□□ 0.33
SDC4-201ENST00000372733 FBXO27Q8NI29 283 aa17.14■□□□□ 0.33
SDC4-201ENST00000372733 DEPTORQ8TB45 409 aa17.14■□□□□ 0.33
SDC4-201ENST00000372733 SH3GL3Q99963 347 aa17.14■□□□□ 0.33
SDC4-201ENST00000372733 MTMR12Q9C0I1 747 aa17.14■□□□□ 0.33
SDC4-201ENST00000372733 SYNCQ9H7C4 482 aa17.14■□□□□ 0.33
SDC4-201ENST00000372733 ASB3Q9Y575 518 aa17.14■□□□□ 0.33
SDC4-201ENST00000372733 A0A0B4J269 797 aa17.13■□□□□ 0.33
SDC4-201ENST00000372733 ASS1P00966 412 aaKnown RBP17.13■□□□□ 0.33
SDC4-201ENST00000372733 RARBP10826 455 aa17.13■□□□□ 0.33
SDC4-201ENST00000372733 TNFSF9P41273 254 aa17.13■□□□□ 0.33
SDC4-201ENST00000372733 SERPINB4P48594 390 aa17.13■□□□□ 0.33
SDC4-201ENST00000372733 MYL6P60660 151 aa17.13■□□□□ 0.33
SDC4-201ENST00000372733 YWHAGP61981 247 aaKnown RBP eCLIP17.13■□□□□ 0.33
SDC4-201ENST00000372733 OR52E8Q6IFG1 317 aa17.13■□□□□ 0.33
SDC4-201ENST00000372733 POLNQ7Z5Q5 900 aa17.13■□□□□ 0.33
SDC4-201ENST00000372733 KIAA0319LQ8IZA0 1049 aa17.13■□□□□ 0.33
SDC4-201ENST00000372733 EMC1Q8N766 993 aa17.13■□□□□ 0.33
SDC4-201ENST00000372733 GPRASP2Q96D09 838 aa17.13■□□□□ 0.33
SDC4-201ENST00000372733 TUBB6Q9BUF5 446 aa17.13■□□□□ 0.33
SDC4-201ENST00000372733 CISHQ9NSE2 258 aa17.13■□□□□ 0.33
SDC4-201ENST00000372733 RNF146Q9NTX7 359 aa17.13■□□□□ 0.33
SDC4-201ENST00000372733 IKBKGQ9Y6K9 419 aa17.13■□□□□ 0.33
SDC4-201ENST00000372733 IQANK1A0A1B0GTG1 560 aa17.13■□□□□ 0.33
SDC4-201ENST00000372733 K7ERI5 159 aa17.13■□□□□ 0.33
SDC4-201ENST00000372733 FAM155BO75949 473 aa17.13■□□□□ 0.33
SDC4-201ENST00000372733 INHBAP08476 426 aa17.13■□□□□ 0.33
SDC4-201ENST00000372733 WEE2P0C1S8 567 aa17.13■□□□□ 0.33
SDC4-201ENST00000372733 SKIP12755 728 aa17.13■□□□□ 0.33
SDC4-201ENST00000372733 KRT72Q14CN4 511 aa17.13■□□□□ 0.33
SDC4-201ENST00000372733 TAF5Q15542 800 aa17.13■□□□□ 0.33
SDC4-201ENST00000372733 PTPN20Q4JDL3 420 aa17.13■□□□□ 0.33
SDC4-201ENST00000372733 DENND1BQ6P3S1 775 aa17.13■□□□□ 0.33
SDC4-201ENST00000372733 CDHR3Q6ZTQ4 885 aa17.13■□□□□ 0.33
SDC4-201ENST00000372733 RFX6Q8HWS3 928 aa17.13■□□□□ 0.33
SDC4-201ENST00000372733 DDX51Q8N8A6 666 aaKnown RBP eCLIP17.13■□□□□ 0.33
SDC4-201ENST00000372733 ZNF526Q8TF50 670 aaPredicted RBP17.13■□□□□ 0.33
SDC4-201ENST00000372733 MECRQ9BV79 373 aa17.13■□□□□ 0.33
SDC4-201ENST00000372733 MAP3K20Q9NYL2 800 aaKnown RBP17.13■□□□□ 0.33
SDC4-201ENST00000372733 SLC9A2Q9UBY0 812 aa17.13■□□□□ 0.33
SDC4-201ENST00000372733 PCSK1NQ9UHG2 260 aa17.13■□□□□ 0.33
SDC4-201ENST00000372733 C2CD2Q9Y426 696 aa17.13■□□□□ 0.33
SDC4-201ENST00000372733 TTLL13PA6NNM8 815 aa17.12■□□□□ 0.33
SDC4-201ENST00000372733 ONECUT3O60422 494 aaPredicted RBP17.12■□□□□ 0.33
SDC4-201ENST00000372733 TGDSO95455 350 aa17.12■□□□□ 0.33
SDC4-201ENST00000372733 KDELR1P24390 212 aa17.12■□□□□ 0.33
SDC4-201ENST00000372733 PGM1P36871 562 aa17.12■□□□□ 0.33
SDC4-201ENST00000372733 INHBEP58166 350 aa17.12■□□□□ 0.33
SDC4-201ENST00000372733 EIF3EP60228 445 aaKnown RBP17.12■□□□□ 0.33
SDC4-201ENST00000372733 ZNF200P98182 395 aaPredicted RBP17.12■□□□□ 0.33
SDC4-201ENST00000372733 SH2D5Q6ZV89 423 aa17.12■□□□□ 0.33
SDC4-201ENST00000372733 SLC44A1Q8WWI5 657 aa17.12■□□□□ 0.33
SDC4-201ENST00000372733 FAM161BQ96MY7 647 aa17.12■□□□□ 0.33
SDC4-201ENST00000372733 PPP1R12CQ9BZL4 782 aa17.12■□□□□ 0.33
SDC4-201ENST00000372733 CNTN3Q9P232 1028 aa17.12■□□□□ 0.33
SDC4-201ENST00000372733 STX18Q9P2W9 335 aaKnown RBP17.12■□□□□ 0.33
SDC4-201ENST00000372733 STRIP2Q9ULQ0 834 aa17.12■□□□□ 0.33
SDC4-201ENST00000372733 SEC23IPQ9Y6Y8 1000 aaKnown RBP17.12■□□□□ 0.33
SDC4-201ENST00000372733 H3BRJ5 948 aa17.12■□□□□ 0.33
SDC4-201ENST00000372733 DKC1O60832 514 aaKnown RBP eCLIP17.12■□□□□ 0.33
SDC4-201ENST00000372733 KCNA3P22001 575 aa17.12■□□□□ 0.33
SDC4-201ENST00000372733 TGFB2P61812 414 aa17.12■□□□□ 0.33
SDC4-201ENST00000372733 TAP1Q03518 808 aa17.12■□□□□ 0.33
SDC4-201ENST00000372733 SLC18A2Q05940 514 aa17.12■□□□□ 0.33
SDC4-201ENST00000372733 PRPF39Q86UA1 669 aaKnown RBP17.12■□□□□ 0.33
SDC4-201ENST00000372733 TREML1Q86YW5 311 aa17.12■□□□□ 0.33
SDC4-201ENST00000372733 LPAR1Q92633 364 aa17.12■□□□□ 0.33
SDC4-201ENST00000372733 ATG4CQ96DT6 458 aa17.12■□□□□ 0.33
SDC4-201ENST00000372733 VCXQ9H320 206 aa17.12■□□□□ 0.33
SDC4-201ENST00000372733 PAPOLBQ9NRJ5 636 aaKnown RBP17.12■□□□□ 0.33
SDC4-201ENST00000372733 KRT82Q9NSB4 513 aa17.12■□□□□ 0.33
SDC4-201ENST00000372733 ADGRA2Q96PE1 1338 aa17.12■□□□□ 0.33
SDC4-201ENST00000372733 KIAA1217Q5T5P2 1943 aa17.11■□□□□ 0.33
SDC4-201ENST00000372733 CCDC195A0A1B0GUA6 201 aa17.11■□□□□ 0.33
SDC4-201ENST00000372733 AVILO75366 819 aa17.11■□□□□ 0.33
SDC4-201ENST00000372733 PIGRP01833 764 aa17.11■□□□□ 0.33
SDC4-201ENST00000372733 ENO1P06733 434 aaKnown RBP17.11■□□□□ 0.33
SDC4-201ENST00000372733 SARNPP82979 210 aaKnown RBP17.11■□□□□ 0.33
SDC4-201ENST00000372733 AP1B1Q10567 949 aa17.11■□□□□ 0.33
SDC4-201ENST00000372733 SLFN12LQ6IEE8 588 aa17.11■□□□□ 0.33
SDC4-201ENST00000372733 TTC13Q8NBP0 860 aa17.11■□□□□ 0.33
SDC4-201ENST00000372733 CFAP36Q96G28 342 aa17.11■□□□□ 0.33
SDC4-201ENST00000372733 GMLQ99445 158 aa17.11■□□□□ 0.33
SDC4-201ENST00000372733 MMADHCQ9H3L0 296 aaPredicted RBP17.11■□□□□ 0.33
SDC4-201ENST00000372733 CYTH4Q9UIA0 394 aa17.11■□□□□ 0.33
SDC4-201ENST00000372733 SCOCQ9UIL1 159 aa17.11■□□□□ 0.33
SDC4-201ENST00000372733 RBP3P10745 1247 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms