RNA–Protein interactions for RNA: ENST00000372246.7

ATG4A-204, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4A, Length 2,501 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-204ENST00000372246 HOMER2Q9NSB8 354 aa5.68□□□□□ -1.5
ATG4A-204ENST00000372246 IL1RAPL1Q9NZN1 696 aa5.68□□□□□ -1.5
ATG4A-204ENST00000372246 APPL1Q9UKG1 709 aa5.68□□□□□ -1.5
ATG4A-204ENST00000372246 MYPNQ86TC9 1320 aa5.68□□□□□ -1.5
ATG4A-204ENST00000372246 BRCA2P51587 3418 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 CAPN8A6NHC0 703 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 LIASO43766 372 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 PEX1O43933 1283 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 LPXNO60711 386 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 PSMD10O75832 226 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 KRT1P04264 644 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 TROVE2P10155 538 aaKnown RBP eCLIP5.67□□□□□ -1.5
ATG4A-204ENST00000372246 SREBF1P36956 1147 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 NOVP48745 357 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 HADHBP55084 474 aaKnown RBP5.67□□□□□ -1.5
ATG4A-204ENST00000372246 OCRLQ01968 901 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 ORC2Q13416 577 aaPredicted RBP5.67□□□□□ -1.5
ATG4A-204ENST00000372246 SNRNP35Q16560 246 aaKnown RBP5.67□□□□□ -1.5
ATG4A-204ENST00000372246 KBTBD12Q3ZCT8 623 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 FAM102BQ5T8I3 360 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 FYB2Q5VWT5 728 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 ZNF280DQ6N043 979 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 DUS1LQ6P1R4 473 aaKnown RBP5.67□□□□□ -1.5
ATG4A-204ENST00000372246 C16orf46Q6P387 395 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 TPTE2Q6XPS3 522 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 SV2AQ7L0J3 742 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 HAUS6Q7Z4H7 955 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 SPATA24Q86W54 205 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 SEPT12Q8IYM1 358 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 GRIN3AQ8TCU5 1115 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 ACER1Q8TDN7 264 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 PYROXD1Q8WU10 500 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 BSNDQ8WZ55 320 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 SHC3Q92529 594 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 AZIN2Q96A70 460 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 GRAMD1AQ96CP6 724 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 CFAP36Q96G28 342 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 FAM213AQ9BRX8 229 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 ZNF577Q9BSK1 485 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 TIPINQ9BVW5 301 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 TRIM55Q9BYV6 548 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 STX18Q9P2W9 335 aaKnown RBP5.67□□□□□ -1.5
ATG4A-204ENST00000372246 SUN2Q9UH99 717 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 NAV1Q8NEY1 1877 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 TMX2-CTNND1H3BSU7 103 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 TRAFD1O14545 582 aaPredicted RBP5.67□□□□□ -1.5
ATG4A-204ENST00000372246 DNALI1O14645 258 aaPredicted RBP5.67□□□□□ -1.5
ATG4A-204ENST00000372246 TLR3O15455 904 aaKnown RBP5.67□□□□□ -1.5
ATG4A-204ENST00000372246 PRPF4O43172 522 aaKnown RBP eCLIP5.67□□□□□ -1.5
ATG4A-204ENST00000372246 ATP6V1G1O75348 118 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 GGPS1O95749 300 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 ACOT2P49753 483 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 AQP5P55064 265 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 BASP1P80723 227 aaKnown RBP5.67□□□□□ -1.5
ATG4A-204ENST00000372246 CDK16Q00536 496 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 DSG1Q02413 1049 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 NFX1Q12986 1120 aaKnown RBP5.67□□□□□ -1.5
ATG4A-204ENST00000372246 Q4G0T1 1027 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 PABPC1LQ4VXU2 614 aaKnown RBP5.67□□□□□ -1.5
ATG4A-204ENST00000372246 ZNF697Q5TEC3 545 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 TATDN1Q6P1N9 297 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 IYDQ6PHW0 289 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 TMEM270Q6UE05 265 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 PTAR1Q7Z6K3 402 aaPredicted RBP5.67□□□□□ -1.5
ATG4A-204ENST00000372246 RASSF3Q86WH2 238 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 HPS6Q86YV9 775 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 UNC45BQ8IWX7 931 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 CTAGE3PQ8IX95 158 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 CACTIN-AS1Q8N1I8 211 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 KCTD17Q8N5Z5 321 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 METTL25Q8N6Q8 603 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 EMC1Q8N766 993 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 FAM71DQ8N9W8 422 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 XXYLT1Q8NBI6 393 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 PPFIBP2Q8ND30 876 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 RIN3Q8TB24 985 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 ADAM32Q8TC27 787 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 DCAKDQ8WVC6 231 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 OPTNQ96CV9 577 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 CFAP57Q96MR6 1250 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 MBOAT7Q96N66 472 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 RILPQ96NA2 401 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 MCEEQ96PE7 176 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 APOL6Q9BWW8 343 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 AMNQ9BXJ7 453 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 PHACTR1Q9C0D0 580 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 MAN1C1Q9NR34 630 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 STK32BQ9NY57 414 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 PSMC3IPQ9P2W1 217 aaPredicted RBP5.67□□□□□ -1.5
ATG4A-204ENST00000372246 PCSK1NQ9UHG2 260 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 ZNF232Q9UNY5 417 aa5.67□□□□□ -1.5
ATG4A-204ENST00000372246 ATAD5Q96QE3 1844 aa5.66□□□□□ -1.5
ATG4A-204ENST00000372246 ADAMTSL1Q8N6G6 1762 aa5.66□□□□□ -1.5
ATG4A-204ENST00000372246 USP34Q70CQ2 3546 aa5.66□□□□□ -1.5
ATG4A-204ENST00000372246 E7ENQ6 273 aa5.66□□□□□ -1.5
ATG4A-204ENST00000372246 BUD23O43709 281 aaKnown RBP5.66□□□□□ -1.5
ATG4A-204ENST00000372246 ITM2AO43736 263 aa5.66□□□□□ -1.5
ATG4A-204ENST00000372246 GDF9O60383 454 aa5.66□□□□□ -1.5
ATG4A-204ENST00000372246 CSDE1O75534 798 aaKnown RBP5.66□□□□□ -1.5
ATG4A-204ENST00000372246 TCEA3O75764 348 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms