RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 APOA4P06727 396 aa16.16■□□□□ 0.18
PTPRF-201ENST00000359947 ITGA8P53708 1063 aa16.16■□□□□ 0.18
PTPRF-201ENST00000359947 SGCGQ13326 291 aa16.16■□□□□ 0.18
PTPRF-201ENST00000359947 RDM1Q8NG50 284 aa16.16■□□□□ 0.18
PTPRF-201ENST00000359947 CYGBQ8WWM9 190 aa16.16■□□□□ 0.18
PTPRF-201ENST00000359947 YY1AP1Q9H869 796 aa16.16■□□□□ 0.18
PTPRF-201ENST00000359947 SERPINI2O75830 405 aa16.16■□□□□ 0.18
PTPRF-201ENST00000359947 HIC1Q14526 733 aa16.16■□□□□ 0.18
PTPRF-201ENST00000359947 UGT3A1Q6NUS8 523 aa16.16■□□□□ 0.18
PTPRF-201ENST00000359947 TRIM65Q6PJ69 517 aa16.16■□□□□ 0.18
PTPRF-201ENST00000359947 PPP1R2P1Q96PQ5 205 aa16.16■□□□□ 0.18
PTPRF-201ENST00000359947 P2RX7Q99572 595 aaKnown RBP16.16■□□□□ 0.18
PTPRF-201ENST00000359947 VWA5AO00534 786 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 NME5P56597 212 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 MED21Q13503 144 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 OR2W6PQ8NHA6 318 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 EMILIN2Q9BXX0 1053 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 ASCC2Q9H1I8 757 aaPredicted RBP16.15■□□□□ 0.18
PTPRF-201ENST00000359947 PSMC3IPQ9P2W1 217 aaPredicted RBP16.15■□□□□ 0.18
PTPRF-201ENST00000359947 ALG6Q9Y672 507 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 RIMS1Q86UR5 1692 aaKnown RBP16.15■□□□□ 0.18
PTPRF-201ENST00000359947 P4HA2O15460 535 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 CHI3L1P36222 383 aaPredicted RBP16.15■□□□□ 0.18
PTPRF-201ENST00000359947 PGM1P36871 562 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 PDIA6Q15084 440 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 TTC39BQ5VTQ0 682 aaPredicted RBP16.15■□□□□ 0.18
PTPRF-201ENST00000359947 SYDE1Q6ZW31 735 aaPredicted RBP16.15■□□□□ 0.18
PTPRF-201ENST00000359947 ZNF555Q8NEP9 628 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 FAM172AQ8WUF8 416 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 MED8Q96G25 268 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 THAP2Q9H0W7 228 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 AGO4Q9HCK5 861 aaKnown RBP16.15■□□□□ 0.18
PTPRF-201ENST00000359947 TLR8Q9NR97 1041 aaKnown RBP16.15■□□□□ 0.18
PTPRF-201ENST00000359947 SPATS2LQ9NUQ6 558 aaKnown RBP16.15■□□□□ 0.18
PTPRF-201ENST00000359947 NDE1Q9NXR1 346 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 SNX12Q9UMY4 172 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 TDRKHQ9Y2W6 561 aaKnown RBP16.15■□□□□ 0.18
PTPRF-201ENST00000359947 HPGDP15428 266 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 TTLL9Q3SXZ7 439 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 DSEQ9UL01 958 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 WNT10BO00744 389 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 FXR1P51114 621 aaKnown RBP eCLIP16.15■□□□□ 0.18
PTPRF-201ENST00000359947 INPP5AQ14642 412 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 TSGA10IPQ3SY00 556 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 PPM1LQ5SGD2 360 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 KLHDC7AQ5VTJ3 777 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 NLRP14Q86W24 1093 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 SPACA7Q96KW9 195 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 NDOR1Q9UHB4 597 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 SPACA6W5XKT8 324 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 SCAMP3O14828 347 aaKnown RBP16.15■□□□□ 0.18
PTPRF-201ENST00000359947 EDRF1Q3B7T1 1238 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 DOK6Q6PKX4 331 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 DTX3LQ8TDB6 740 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 DIS3LQ8TF46 1054 aaKnown RBP16.15■□□□□ 0.18
PTPRF-201ENST00000359947 AHCYL2Q96HN2 611 aaKnown RBP16.15■□□□□ 0.18
PTPRF-201ENST00000359947 ADCYAP1R1P41586 468 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 TKTL1P51854 596 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 OVOS1Q6IE37 1185 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 NT5DC4Q86YG4 428 aa16.15■□□□□ 0.18
PTPRF-201ENST00000359947 ABCA6Q8N139 1617 aa16.14■□□□□ 0.17
PTPRF-201ENST00000359947 AMPD2Q01433 879 aa16.14■□□□□ 0.17
PTPRF-201ENST00000359947 FSCN1Q16658 493 aaKnown RBP16.14■□□□□ 0.17
PTPRF-201ENST00000359947 ACAD10Q6JQN1 1059 aa16.14■□□□□ 0.17
PTPRF-201ENST00000359947 C16orf59Q7L2K0 433 aa16.14■□□□□ 0.17
PTPRF-201ENST00000359947 LINC00523Q86TU6 105 aa16.14■□□□□ 0.17
PTPRF-201ENST00000359947 RIN2Q8WYP3 895 aaPredicted RBP16.14■□□□□ 0.17
PTPRF-201ENST00000359947 LHX1P48742 406 aa16.14■□□□□ 0.17
PTPRF-201ENST00000359947 CTCFP49711 727 aaPredicted RBP16.14■□□□□ 0.17
PTPRF-201ENST00000359947 ALDH8A1Q9H2A2 487 aaPredicted RBP16.14■□□□□ 0.17
PTPRF-201ENST00000359947 MED14O60244 1454 aa16.14■□□□□ 0.17
PTPRF-201ENST00000359947 GLRBP48167 497 aa16.14■□□□□ 0.17
PTPRF-201ENST00000359947 PRIM2P49643 509 aa16.14■□□□□ 0.17
PTPRF-201ENST00000359947 MYL6P60660 151 aa16.14■□□□□ 0.17
PTPRF-201ENST00000359947 ZNF438Q7Z4V0 828 aa16.14■□□□□ 0.17
PTPRF-201ENST00000359947 TMX2Q9Y320 296 aa16.14■□□□□ 0.17
PTPRF-201ENST00000359947 F8W810 466 aa16.14■□□□□ 0.17
PTPRF-201ENST00000359947 CYTH3O43739 400 aa16.14■□□□□ 0.17
PTPRF-201ENST00000359947 ITIH2P19823 946 aa16.14■□□□□ 0.17
PTPRF-201ENST00000359947 NAA30Q147X3 362 aaPredicted RBP16.14■□□□□ 0.17
PTPRF-201ENST00000359947 PGS1Q32NB8 556 aa16.14■□□□□ 0.17
PTPRF-201ENST00000359947 PCNX4Q63HM2 1172 aa16.14■□□□□ 0.17
PTPRF-201ENST00000359947 USP13Q92995 863 aaPredicted RBP16.14■□□□□ 0.17
PTPRF-201ENST00000359947 UNKQ9C0B0 810 aaKnown RBP16.14■□□□□ 0.17
PTPRF-201ENST00000359947 CYP7B1O75881 506 aa16.14■□□□□ 0.17
PTPRF-201ENST00000359947 MAGEA4P43358 317 aa16.14■□□□□ 0.17
PTPRF-201ENST00000359947 PPP4CP60510 307 aa16.14■□□□□ 0.17
PTPRF-201ENST00000359947 RTFDC1Q9BY42 306 aaPredicted RBP16.14■□□□□ 0.17
PTPRF-201ENST00000359947 PLD1Q13393 1074 aa16.14■□□□□ 0.17
PTPRF-201ENST00000359947 E4F1Q66K89 784 aaPredicted RBP16.14■□□□□ 0.17
PTPRF-201ENST00000359947 MYPNQ86TC9 1320 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 AKR1A1P14550 325 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 DIP2AQ14689 1571 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 FNDC3BQ53EP0 1204 aaKnown RBP16.13■□□□□ 0.17
PTPRF-201ENST00000359947 TPGS1Q6ZTW0 290 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 OTOAQ7RTW8 1153 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 TRMT11Q7Z4G4 463 aaKnown RBP16.13■□□□□ 0.17
PTPRF-201ENST00000359947 RPS6KL1Q9Y6S9 549 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 SOAT2O75908 522 aa16.13■□□□□ 0.17
PTPRF-201ENST00000359947 BCAT1P54687 386 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms