RNA–Protein interactions for RNA: ENST00000354757.4

PCDHB11-201, Transcript of protocadherin beta 11, humanhuman

APPRIS P1 BASIC

Gene PCDHB11, Length 4,198 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB11-201ENST00000354757 GARSP41250 739 aaKnown RBP12.9□□□□□ -0.34
PCDHB11-201ENST00000354757 EIF3BP55884 814 aaKnown RBP12.9□□□□□ -0.34
PCDHB11-201ENST00000354757 MFSD7Q6UXD7 560 aa12.9□□□□□ -0.34
PCDHB11-201ENST00000354757 MCUR1Q96AQ8 359 aa12.9□□□□□ -0.34
PCDHB11-201ENST00000354757 RMDN1Q96DB5 314 aa12.9□□□□□ -0.34
PCDHB11-201ENST00000354757 SLITRK1Q96PX8 696 aa12.9□□□□□ -0.34
PCDHB11-201ENST00000354757 SARS2Q9NP81 518 aaKnown RBP12.9□□□□□ -0.34
PCDHB11-201ENST00000354757 TMEM39AQ9NV64 488 aa12.9□□□□□ -0.34
PCDHB11-201ENST00000354757 SMPD4Q9NXE4 827 aa12.9□□□□□ -0.34
PCDHB11-201ENST00000354757 ZNF112Q9UJU3 913 aa12.9□□□□□ -0.34
PCDHB11-201ENST00000354757 MYH3P11055 1940 aa12.9□□□□□ -0.34
PCDHB11-201ENST00000354757 CLDN5O00501 218 aa12.9□□□□□ -0.34
PCDHB11-201ENST00000354757 EFEMP1Q12805 493 aa12.9□□□□□ -0.34
PCDHB11-201ENST00000354757 SH3D19Q5HYK7 790 aa12.9□□□□□ -0.34
PCDHB11-201ENST00000354757 NT5DC3Q86UY8 548 aa12.9□□□□□ -0.34
PCDHB11-201ENST00000354757 CDKL3Q8IVW4 592 aaPredicted RBP12.9□□□□□ -0.34
PCDHB11-201ENST00000354757 ZIM3Q96PE6 472 aa12.9□□□□□ -0.34
PCDHB11-201ENST00000354757 CD248Q9HCU0 757 aa12.9□□□□□ -0.34
PCDHB11-201ENST00000354757 CCDC195A0A1B0GUA6 201 aa12.89□□□□□ -0.35
PCDHB11-201ENST00000354757 ALDH2P05091 517 aa12.89□□□□□ -0.35
PCDHB11-201ENST00000354757 ACADSBP45954 432 aa12.89□□□□□ -0.35
PCDHB11-201ENST00000354757 BRCC3P46736 316 aa12.89□□□□□ -0.35
PCDHB11-201ENST00000354757 SNX17Q15036 470 aa12.89□□□□□ -0.35
PCDHB11-201ENST00000354757 SKIV2LQ15477 1246 aaKnown RBP12.89□□□□□ -0.35
PCDHB11-201ENST00000354757 KCNA10Q16322 511 aa12.89□□□□□ -0.35
PCDHB11-201ENST00000354757 SDHAF4Q5VUM1 108 aa12.89□□□□□ -0.35
PCDHB11-201ENST00000354757 IL31Q6EBC2 164 aa12.89□□□□□ -0.35
PCDHB11-201ENST00000354757 FAM71AQ8IYT1 594 aa12.89□□□□□ -0.35
PCDHB11-201ENST00000354757 LBHD1Q9BQE6 289 aaPredicted RBP12.89□□□□□ -0.35
PCDHB11-201ENST00000354757 MINDY3Q9H8M7 445 aa12.89□□□□□ -0.35
PCDHB11-201ENST00000354757 PFDN4Q9NQP4 134 aa12.89□□□□□ -0.35
PCDHB11-201ENST00000354757 UBP1Q9NZI7 540 aa12.89□□□□□ -0.35
PCDHB11-201ENST00000354757 XPO7Q9UIA9 1087 aaKnown RBP12.89□□□□□ -0.35
PCDHB11-201ENST00000354757 TARSL2A2RTX5 802 aaKnown RBP12.89□□□□□ -0.35
PCDHB11-201ENST00000354757 MAP2K7O14733 419 aa12.89□□□□□ -0.35
PCDHB11-201ENST00000354757 SEC24CP53992 1094 aa12.89□□□□□ -0.35
PCDHB11-201ENST00000354757 ZNF235Q14590 738 aa12.89□□□□□ -0.35
PCDHB11-201ENST00000354757 CCDC62Q6P9F0 684 aa12.89□□□□□ -0.35
PCDHB11-201ENST00000354757 AGR3Q8TD06 166 aa12.89□□□□□ -0.35
PCDHB11-201ENST00000354757 CELF6Q96J87 481 aaKnown RBP12.89□□□□□ -0.35
PCDHB11-201ENST00000354757 CYP3A43Q9HB55 503 aa12.89□□□□□ -0.35
PCDHB11-201ENST00000354757 KPNA6O60684 536 aa12.89□□□□□ -0.35
PCDHB11-201ENST00000354757 POU5F1BQ06416 359 aa12.89□□□□□ -0.35
PCDHB11-201ENST00000354757 PRUNE1Q86TP1 453 aa12.89□□□□□ -0.35
PCDHB11-201ENST00000354757 RAB3IL1Q8TBN0 382 aa12.89□□□□□ -0.35
PCDHB11-201ENST00000354757 HELQQ8TDG4 1101 aa12.89□□□□□ -0.35
PCDHB11-201ENST00000354757 FBXO32Q969P5 355 aa12.89□□□□□ -0.35
PCDHB11-201ENST00000354757 IFT43Q96FT9 208 aa12.89□□□□□ -0.35
PCDHB11-201ENST00000354757 RPRD1AQ96P16 312 aaPredicted RBP12.89□□□□□ -0.35
PCDHB11-201ENST00000354757 HMGB1P1B2RPK0 211 aaPredicted RBP12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 PMPCBO75439 489 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 KRT37O76014 449 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 MRPS6P82932 125 aaKnown RBP12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 ITGA7Q13683 1181 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 BOLA3Q53S33 107 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 TMC7Q7Z402 723 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 SPATS2Q86XZ4 545 aaKnown RBP12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 ELMOD1Q8N336 334 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 RAPGEF5Q92565 580 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 PCDHB18PQ96TA0 734 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 TRAIPQ9BWF2 469 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 SALL4Q9UJQ4 1053 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 AJAP1Q9UKB5 411 aaPredicted RBP12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 CHD4Q14839 1912 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 EIF4E1BA6NMX2 242 aaKnown RBP12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 DPYSL4O14531 572 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 PPP1R12AO14974 1030 aaPredicted RBP12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 EIF3HO15372 352 aaKnown RBP eCLIP12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 ATICP31939 592 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 ICAM3P32942 547 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 FAM133BQ5BKY9 247 aaKnown RBP12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 TTC30AQ86WT1 665 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 MMGT1Q8N4V1 131 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 SLC25A41Q8N5S1 370 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 IPMKQ8NFU5 416 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 CNPY3Q9BT09 278 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 YY1AP1Q9H869 796 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 IPO11Q9UI26 975 aaKnown RBP12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 AP4E1Q9UPM8 1137 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 KNL1Q8NG31 2342 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 ZC3H4Q9UPT8 1303 aaKnown RBP12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 RGS20O76081 388 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 USP17L7P0C7H9 530 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 SERPINB6P35237 376 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 PRKCIP41743 596 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 BST2Q10589 180 aaKnown RBP12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 APTXQ7Z2E3 356 aaKnown RBP12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 CREG2Q8IUH2 290 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 DEFB106AQ8N104 65 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 GPR152Q8TDT2 470 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 GANCQ8TET4 914 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 COLEC11Q9BWP8 271 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 B3GNT5Q9BYG0 378 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 MYO7AQ13402 2215 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 ASS1P00966 412 aaKnown RBP12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 KITP10721 976 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 ARL2P36404 184 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 TFDP3Q5H9I0 405 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 TRIM68Q6AZZ1 485 aa12.88□□□□□ -0.35
PCDHB11-201ENST00000354757 EPM2AIP1Q7L775 607 aaPredicted RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms