RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 PI4K2BG5E9Z4 385 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 HMOX2P30519 316 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 GPAT2Q6NUI2 795 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 TTC23LQ6PF05 361 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 SH3RF1Q7Z6J0 888 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 ARPINQ7Z6K5 226 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 ARID3BQ8IVW6 561 aaPredicted RBP10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 TBC1D16Q8TBP0 767 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 ZNF507Q8TCN5 953 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 PAFAH2Q99487 392 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 RUBCNLQ9H714 662 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 KLK7P49862 253 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 ARCQ7LC44 396 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 RNF149Q8NC42 400 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 SPIRE2Q8WWL2 714 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 CGRRF1Q99675 332 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 SEMA6BQ9H3T3 888 aa10.67□□□□□ -0.7
CCDC88A-202ENST00000336838 MSH4O15457 936 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 KCNA2P16389 499 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 ATF7IP2Q5U623 682 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 TRPC4APQ8TEL6 797 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 STK32AQ8WU08 396 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 NR1H4Q96RI1 486 aaPredicted RBP10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 IL25Q9H293 177 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 LRRC40Q9H9A6 602 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 ARHGAP20Q9P2F6 1191 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 MRPS15P82914 257 aaKnown RBP10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 RIPK1Q13546 671 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 USP10Q14694 798 aaKnown RBP10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 ZNF394Q53GI3 561 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 ANGPTL8Q6UXH0 198 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 FAM210AQ96ND0 272 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 OPTNQ96CV9 577 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 TMA16Q96EY4 203 aaKnown RBP10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 ATP11BQ9Y2G3 1177 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 NPHP3-ACAD11A0A0J9YXS1 232 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 TCRBV5S4A2TA0A5A2 114 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 ENO4A6NNW6 628 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 PREPLQ4J6C6 727 aaPredicted RBP10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 CACHD1Q5VU97 1274 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 ERO1BQ86YB8 467 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 EGFL8Q99944 293 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 PRRG3Q9BZD7 231 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 PRKD2Q9BZL6 878 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 RPAP3Q9H6T3 665 aaPredicted RBP10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 KRCC1Q9NPI7 259 aaPredicted RBP10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 DSEQ9UL01 958 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 HBP1O60381 514 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 RASSF9O75901 435 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 RARBP10826 455 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 PCSK2P16519 638 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 ENPEPQ07075 957 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 KSR1Q8IVT5 923 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 AADATQ8N5Z0 425 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 FAM151AQ8WW52 585 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 HEY2Q9UBP5 337 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 TRIM16LQ309B1 348 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 BDH2Q9BUT1 245 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 CCDC90BQ9GZT6 254 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 BRD2P25440 801 aaKnown RBP10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 PRKAA1Q13131 559 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 ACMSDQ8TDX5 336 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 WDR60Q8WVS4 1066 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 HPDLQ96IR7 371 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 PIM2Q9P1W9 311 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 FAM153AQ9UHL3 310 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 EVPLLA8MZ36 301 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 DFFAO00273 331 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 PAEPP09466 180 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 BCAT1P54687 386 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 ERMARDQ5T6L9 678 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 NT5DC3Q86UY8 548 aa10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 SRP68Q9UHB9 627 aaKnown RBP10.66□□□□□ -0.7
CCDC88A-202ENST00000336838 SERPINE1P05121 402 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 EIF2S1P05198 315 aaKnown RBP10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 CCDC159P0C7I6 412 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 FGFR2P21802 821 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 CYTH1Q15438 398 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 KCNQ5Q9NR82 932 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 RABGEF1Q9UJ41 708 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 FOXN3O00409 490 aaPredicted RBP10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 MAP3K7CLP57077 242 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 CYP24A1Q07973 514 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 SCARA3Q6AZY7 606 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 LRRC74BQ6ZQY2 392 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 KIF2BQ8N4N8 673 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 OR2W6PQ8NHA6 318 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 FBXO25Q8TCJ0 367 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 LMCD1Q9NZU5 365 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 DDX52Q9Y2R4 599 aaKnown RBP eCLIP10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 NDUFS3O75489 264 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 RAD17O75943 681 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 KRT75O95678 551 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 FAM58BPP0C7Q3 252 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 TGFB3P10600 412 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 ENO3P13929 434 aaPredicted RBP10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 ANXA11P50995 505 aaKnown RBP10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 OAZ1P54368 228 aa10.65□□□□□ -0.7
CCDC88A-202ENST00000336838 MRNIPQ6NTE8 343 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms