RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 INO80DQ53TQ3 878 aaPredicted RBP5.01□□□□□ -1.61
CSMD3-201ENST00000297405 KYAT3Q6YP21 454 aaKnown RBP5.01□□□□□ -1.61
CSMD3-201ENST00000297405 ARL5BQ96KC2 179 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 BBS4Q96RK4 519 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 AIFM2Q9BRQ8 373 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 HDHD2Q9H0R4 259 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 NOL11Q9H8H0 719 aaKnown RBP5.01□□□□□ -1.61
CSMD3-201ENST00000297405 CYP39A1Q9NYL5 469 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 TMOD3Q9NYL9 352 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 NCKIPSDQ9NZQ3 722 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 SYNPO2Q9UMS6 1093 aa5.01□□□□□ -1.61
CSMD3-201ENST00000297405 PARP4Q9UKK3 1724 aaKnown RBP5.01□□□□□ -1.61
CSMD3-201ENST00000297405 FAM172BPA6NC97 362 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 TRIM64CA6NLI5 447 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 VNN2O95498 520 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 ATF4P18848 351 aaPredicted RBP5□□□□□ -1.61
CSMD3-201ENST00000297405 RXRAP19793 462 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 GNG2P59768 71 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 PPIL2Q13356 520 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 USF2Q15853 346 aaPredicted RBP5□□□□□ -1.61
CSMD3-201ENST00000297405 CARTPTQ16568 116 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 DPCR1Q3MIW9 517 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 TIGD7Q6NT04 549 aaPredicted RBP5□□□□□ -1.61
CSMD3-201ENST00000297405 FRMD5Q7Z6J6 570 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 TMEM126BQ8IUX1 230 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 AZI2Q9H6S1 392 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 KCNK4Q9NYG8 393 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 KCNIP3Q9Y2W7 256 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 PCDHA5Q9Y5H7 936 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 SH3TC1Q8TE82 1336 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 FGAP02671 866 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 TFCP2Q12800 502 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 PTPRNQ16849 979 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 ASPRV1Q53RT3 343 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 C12orf56Q8IXR9 622 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 GALNT6Q8NCL4 622 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 NMD3Q96D46 503 aaKnown RBP5□□□□□ -1.61
CSMD3-201ENST00000297405 OR2B2Q9GZK3 357 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 PLA2R1Q13018 1463 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 SOWAHDA6NJG2 315 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 SEC24AO95486 1093 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 TGM6O95932 706 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 PENKP01210 267 aaPredicted RBP5□□□□□ -1.61
CSMD3-201ENST00000297405 PTX3P26022 381 aaPredicted RBP5□□□□□ -1.61
CSMD3-201ENST00000297405 GPS1Q13098 491 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 PTGDRQ13258 359 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 BSPRYQ5W0U4 402 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 ANKS3Q6ZW76 656 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 NLRP10Q86W26 655 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 RCOR2Q8IZ40 523 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 ZNF420Q8TAQ5 688 aaPredicted RBP5□□□□□ -1.61
CSMD3-201ENST00000297405 ZKSCAN4Q969J2 545 aaPredicted RBP5□□□□□ -1.61
CSMD3-201ENST00000297405 PTCD3Q96EY7 689 aaKnown RBP5□□□□□ -1.61
CSMD3-201ENST00000297405 RMDN3Q96TC7 470 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 BTBD10Q9BSF8 475 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 UPB1Q9UBR1 384 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 CHORDC1Q9UHD1 332 aaPredicted RBP5□□□□□ -1.61
CSMD3-201ENST00000297405 GNPTGQ9UJJ9 305 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 GVINP1Q7Z2Y8 2422 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 CDK12Q9NYV4 1490 aaPredicted RBP5□□□□□ -1.61
CSMD3-201ENST00000297405 ISPDA4D126 451 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 H3BQF6 201 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 SRGAP2O75044 1071 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 FAM228BP0C875 321 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 PLOD1Q02809 727 aaPredicted RBP5□□□□□ -1.61
CSMD3-201ENST00000297405 MRPL50Q8N5N7 158 aaKnown RBP5□□□□□ -1.61
CSMD3-201ENST00000297405 CREB3L1Q96BA8 519 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 NDNQ99608 321 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 SLC12A5Q9H2X9 1139 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 CDHR2Q9BYE9 1310 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 TRIM64A6NGJ6 449 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 TRIM64BA6NI03 449 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 YES1P07947 543 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 YARSP54577 528 aaKnown RBP5□□□□□ -1.61
CSMD3-201ENST00000297405 KCNK10P57789 538 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 CACHD1Q5VU97 1274 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 ERAP2Q6P179 960 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 RAB43Q86YS6 212 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 PPM1KQ8N3J5 372 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 ZNF285Q96NJ3 590 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 SLC5A4Q9NY91 659 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 GTSE1Q9NYZ3 720 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 CDH7Q9ULB5 785 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 TSTD3H0UI37 97 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 EML1O00423 815 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 SSNA1O43805 119 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 PALMO75781 387 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 PSMC5P62195 406 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 SLC29A2Q14542 456 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 ZBTB6Q15916 424 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 CCDC58Q4VC31 144 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 TMEM17Q86X19 198 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 ZBTB8BQ8NAP8 495 aaPredicted RBP5□□□□□ -1.61
CSMD3-201ENST00000297405 HIPK4Q8NE63 616 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 RNPC3Q96LT9 517 aaKnown RBP5□□□□□ -1.61
CSMD3-201ENST00000297405 PNPLA8Q9NP80 782 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 SETD4Q9NVD3 440 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 THAP1Q9NVV9 213 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 TTLL3Q9Y4R7 772 aa5□□□□□ -1.61
CSMD3-201ENST00000297405 RAB19A4D1S5 217 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms