RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 MAD1L1Q9Y6D9 718 aa17.42■□□□□ 0.38
VPS54-201ENST00000272322 ABLIM1O14639 778 aa17.42■□□□□ 0.38
VPS54-201ENST00000272322 CBX6O95503 412 aa17.42■□□□□ 0.38
VPS54-201ENST00000272322 APRTP07741 180 aa17.42■□□□□ 0.38
VPS54-201ENST00000272322 KRT16P08779 473 aa17.42■□□□□ 0.38
VPS54-201ENST00000272322 MBTD1Q05BQ5 628 aa17.42■□□□□ 0.38
VPS54-201ENST00000272322 SLC10A6Q3KNW5 377 aa17.42■□□□□ 0.38
VPS54-201ENST00000272322 SYDE1Q6ZW31 735 aaPredicted RBP17.42■□□□□ 0.38
VPS54-201ENST00000272322 CROCCP2Q86T23 111 aa17.42■□□□□ 0.38
VPS54-201ENST00000272322 TRABD2AQ86V40 505 aa17.42■□□□□ 0.38
VPS54-201ENST00000272322 LRRC8CQ8TDW0 803 aa17.42■□□□□ 0.38
VPS54-201ENST00000272322 MAML1Q92585 1016 aa17.42■□□□□ 0.38
VPS54-201ENST00000272322 TMEM176AQ96HP8 235 aa17.42■□□□□ 0.38
VPS54-201ENST00000272322 FGD4Q96M96 766 aa17.42■□□□□ 0.38
VPS54-201ENST00000272322 PGLYRP2Q96PD5 576 aa17.42■□□□□ 0.38
VPS54-201ENST00000272322 TMEM109Q9BVC6 243 aa17.42■□□□□ 0.38
VPS54-201ENST00000272322 IFT122Q9HBG6 1241 aa17.42■□□□□ 0.38
VPS54-201ENST00000272322 KCNN4O15554 427 aa17.41■□□□□ 0.38
VPS54-201ENST00000272322 ELK3P41970 407 aa17.41■□□□□ 0.38
VPS54-201ENST00000272322 PRAMEF19Q5SWL8 479 aa17.41■□□□□ 0.38
VPS54-201ENST00000272322 BBOF1Q8ND07 529 aa17.41■□□□□ 0.38
VPS54-201ENST00000272322 OR6B3Q8NGW1 331 aa17.41■□□□□ 0.38
VPS54-201ENST00000272322 SLC13A1Q9BZW2 595 aa17.41■□□□□ 0.38
VPS54-201ENST00000272322 MCF2LO15068 1137 aa17.41■□□□□ 0.38
VPS54-201ENST00000272322 MYCNP04198 464 aaPredicted RBP17.41■□□□□ 0.38
VPS54-201ENST00000272322 EIF4BP23588 611 aaKnown RBP17.41■□□□□ 0.38
VPS54-201ENST00000272322 GBP2P32456 591 aaPredicted RBP17.41■□□□□ 0.38
VPS54-201ENST00000272322 LMNB2Q03252 620 aa17.41■□□□□ 0.38
VPS54-201ENST00000272322 CA9Q16790 459 aa17.41■□□□□ 0.38
VPS54-201ENST00000272322 TNFAIP8L3Q5GJ75 292 aa17.41■□□□□ 0.38
VPS54-201ENST00000272322 TRNP1Q6NT89 227 aa17.41■□□□□ 0.38
VPS54-201ENST00000272322 PPM1NQ8N819 430 aa17.41■□□□□ 0.38
VPS54-201ENST00000272322 CCDC110Q8TBZ0 833 aa17.41■□□□□ 0.38
VPS54-201ENST00000272322 FAF2Q96CS3 445 aa17.41■□□□□ 0.38
VPS54-201ENST00000272322 PAFAH2Q99487 392 aa17.41■□□□□ 0.38
VPS54-201ENST00000272322 NOD2Q9HC29 1040 aa17.41■□□□□ 0.38
VPS54-201ENST00000272322 SETD4Q9NVD3 440 aa17.41■□□□□ 0.38
VPS54-201ENST00000272322 CLUHO75153 1309 aa17.41■□□□□ 0.38
VPS54-201ENST00000272322 SSC5DA1L4H1 1573 aa17.41■□□□□ 0.38
VPS54-201ENST00000272322 CCDC195A0A1B0GUA6 201 aa17.41■□□□□ 0.38
VPS54-201ENST00000272322 H0Y3Z8 333 aa17.41■□□□□ 0.38
VPS54-201ENST00000272322 NCALDP61601 193 aa17.41■□□□□ 0.38
VPS54-201ENST00000272322 SLC25A11Q02978 314 aaKnown RBP17.41■□□□□ 0.38
VPS54-201ENST00000272322 PPP1R21Q6ZMI0 780 aa17.41■□□□□ 0.38
VPS54-201ENST00000272322 RFX8Q6ZV50 586 aa17.41■□□□□ 0.38
VPS54-201ENST00000272322 C18orf25Q96B23 403 aaPredicted RBP17.41■□□□□ 0.38
VPS54-201ENST00000272322 STAMBPL1Q96FJ0 436 aa17.41■□□□□ 0.38
VPS54-201ENST00000272322 LCP1P13796 627 aa17.4■□□□□ 0.38
VPS54-201ENST00000272322 MSH2P43246 934 aa17.4■□□□□ 0.38
VPS54-201ENST00000272322 IREB2P48200 963 aaKnown RBP17.4■□□□□ 0.38
VPS54-201ENST00000272322 BMPR2Q13873 1038 aa17.4■□□□□ 0.38
VPS54-201ENST00000272322 ARMCX2Q7L311 632 aa17.4■□□□□ 0.38
VPS54-201ENST00000272322 P3H4Q92791 437 aa17.4■□□□□ 0.38
VPS54-201ENST00000272322 SMARCAD1Q9H4L7 1026 aa17.4■□□□□ 0.38
VPS54-201ENST00000272322 GOLGA2P5Q9HBQ8 144 aa17.4■□□□□ 0.38
VPS54-201ENST00000272322 SNTG2Q9NY99 539 aa17.4■□□□□ 0.38
VPS54-201ENST00000272322 ARL2BPQ9Y2Y0 163 aa17.4■□□□□ 0.38
VPS54-201ENST00000272322 IKBKGQ9Y6K9 419 aa17.4■□□□□ 0.38
VPS54-201ENST00000272322 SIGLEC16A6NMB1 481 aa17.4■□□□□ 0.38
VPS54-201ENST00000272322 PRPSAP2O60256 369 aa17.4■□□□□ 0.38
VPS54-201ENST00000272322 CNMDO75829 334 aa17.4■□□□□ 0.38
VPS54-201ENST00000272322 CRADDP78560 199 aa17.4■□□□□ 0.38
VPS54-201ENST00000272322 FAM183BPQ6ZVS7 135 aa17.4■□□□□ 0.38
VPS54-201ENST00000272322 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.4■□□□□ 0.38
VPS54-201ENST00000272322 PDIK1LQ8N165 341 aa17.4■□□□□ 0.38
VPS54-201ENST00000272322 TCP10LQ8TDR4 215 aa17.4■□□□□ 0.38
VPS54-201ENST00000272322 FAM167AQ96KS9 214 aa17.4■□□□□ 0.38
VPS54-201ENST00000272322 WDR83Q9BRX9 315 aaKnown RBP17.4■□□□□ 0.38
VPS54-201ENST00000272322 UBN1Q9NPG3 1134 aa17.4■□□□□ 0.38
VPS54-201ENST00000272322 CLEC11AQ9Y240 323 aa17.4■□□□□ 0.38
VPS54-201ENST00000272322 HMGCRP04035 888 aa17.4■□□□□ 0.38
VPS54-201ENST00000272322 TGFB3P10600 412 aa17.4■□□□□ 0.38
VPS54-201ENST00000272322 CYP3A5P20815 502 aa17.4■□□□□ 0.38
VPS54-201ENST00000272322 PPP1R26Q5T8A7 1209 aaPredicted RBP17.4■□□□□ 0.38
VPS54-201ENST00000272322 PMF1Q6P1K2 205 aa17.4■□□□□ 0.38
VPS54-201ENST00000272322 GPC2Q8N158 579 aa17.4■□□□□ 0.38
VPS54-201ENST00000272322 TCRBV5S1A1TA0A578 114 aa17.39■□□□□ 0.37
VPS54-201ENST00000272322 CHUKO15111 745 aa17.39■□□□□ 0.37
VPS54-201ENST00000272322 TOP3BO95985 862 aaKnown RBP17.39■□□□□ 0.37
VPS54-201ENST00000272322 KITP10721 976 aa17.39■□□□□ 0.37
VPS54-201ENST00000272322 TTLL4Q14679 1199 aa17.39■□□□□ 0.37
VPS54-201ENST00000272322 TMEM132DQ14C87 1099 aa17.39■□□□□ 0.37
VPS54-201ENST00000272322 GOLGA7BQ2TAP0 167 aa17.39■□□□□ 0.37
VPS54-201ENST00000272322 KBTBD12Q3ZCT8 623 aa17.39■□□□□ 0.37
VPS54-201ENST00000272322 LRRC6Q86X45 466 aa17.39■□□□□ 0.37
VPS54-201ENST00000272322 CDCA5Q96FF9 252 aa17.39■□□□□ 0.37
VPS54-201ENST00000272322 MYLK2Q9H1R3 596 aa17.39■□□□□ 0.37
VPS54-201ENST00000272322 TMPRSS4Q9NRS4 437 aa17.39■□□□□ 0.37
VPS54-201ENST00000272322 IL1RAPL1Q9NZN1 696 aa17.39■□□□□ 0.37
VPS54-201ENST00000272322 MARCOQ9UEW3 520 aaPredicted RBP17.39■□□□□ 0.37
VPS54-201ENST00000272322 CNTN6Q9UQ52 1028 aa17.39■□□□□ 0.37
VPS54-201ENST00000272322 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.39■□□□□ 0.37
VPS54-201ENST00000272322 LGALS2P05162 132 aa17.39■□□□□ 0.37
VPS54-201ENST00000272322 KRT7P08729 469 aa17.39■□□□□ 0.37
VPS54-201ENST00000272322 RBL1P28749 1068 aa17.39■□□□□ 0.37
VPS54-201ENST00000272322 ARL4CP56559 192 aa17.39■□□□□ 0.37
VPS54-201ENST00000272322 SPARCL1Q14515 664 aa17.39■□□□□ 0.37
VPS54-201ENST00000272322 TSHZ1Q6ZSZ6 1077 aa17.39■□□□□ 0.37
VPS54-201ENST00000272322 MRPL45Q9BRJ2 306 aaKnown RBP17.39■□□□□ 0.37
VPS54-201ENST00000272322 FZD8Q9H461 694 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms