RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 COPEO14579 308 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 ZWINTO95229 277 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 ENO1P06733 434 aaKnown RBP13.23□□□□□ -0.29
LIG1-201ENST00000263274 APRTP07741 180 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 CCNB1P14635 433 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 GM2AP17900 193 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 NAMPTP43490 491 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 STAT5BP51692 787 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 CAPSQ13938 189 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 TMEM132BQ14DG7 1078 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 RCN1Q15293 331 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 CASC4Q6P4E1 433 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 NCAPG2Q86XI2 1143 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 RDM1Q8NG50 284 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 PRR11Q96HE9 360 aaPredicted RBP13.23□□□□□ -0.29
LIG1-201ENST00000263274 CYTH2Q99418 400 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 TMEM120AQ9BXJ8 343 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 PORCNQ9H237 461 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 ACAD9Q9H845 621 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 SLC24A2Q9UI40 661 aa13.23□□□□□ -0.29
LIG1-201ENST00000263274 NOP56O00567 594 aaKnown RBP13.22□□□□□ -0.29
LIG1-201ENST00000263274 KRT7P08729 469 aa13.22□□□□□ -0.29
LIG1-201ENST00000263274 MYL2P10916 166 aa13.22□□□□□ -0.29
LIG1-201ENST00000263274 ATP4AP20648 1035 aa13.22□□□□□ -0.29
LIG1-201ENST00000263274 PTPN4P29074 926 aa13.22□□□□□ -0.29
LIG1-201ENST00000263274 PTDSS1P48651 473 aaKnown RBP13.22□□□□□ -0.29
LIG1-201ENST00000263274 SLC8A3P57103 927 aa13.22□□□□□ -0.29
LIG1-201ENST00000263274 MCL1Q07820 350 aa13.22□□□□□ -0.29
LIG1-201ENST00000263274 ACVR2BQ13705 512 aa13.22□□□□□ -0.29
LIG1-201ENST00000263274 DSTYKQ6XUX3 929 aa13.22□□□□□ -0.29
LIG1-201ENST00000263274 CLNKQ7Z7G1 428 aa13.22□□□□□ -0.29
LIG1-201ENST00000263274 PCGF5Q86SE9 256 aa13.22□□□□□ -0.29
LIG1-201ENST00000263274 FAM161BQ96MY7 647 aa13.22□□□□□ -0.29
LIG1-201ENST00000263274 GMLQ99445 158 aa13.22□□□□□ -0.29
LIG1-201ENST00000263274 ADPGKQ9BRR6 497 aa13.22□□□□□ -0.29
LIG1-201ENST00000263274 LRMDAQ9H2I8 198 aa13.22□□□□□ -0.29
LIG1-201ENST00000263274 CYP39A1Q9NYL5 469 aa13.22□□□□□ -0.29
LIG1-201ENST00000263274 IQANK1A0A1B0GTG1 560 aa13.22□□□□□ -0.29
LIG1-201ENST00000263274 TRIM49D1C9J1S8 452 aa13.22□□□□□ -0.29
LIG1-201ENST00000263274 I3L4J1 428 aa13.22□□□□□ -0.29
LIG1-201ENST00000263274 KCNN4O15554 427 aa13.22□□□□□ -0.29
LIG1-201ENST00000263274 PRPF4O43172 522 aaKnown RBP eCLIP13.22□□□□□ -0.291e-6■■■■□ 23.6
LIG1-201ENST00000263274 PEX11AO75192 247 aa13.22□□□□□ -0.29
LIG1-201ENST00000263274 LRCH4O75427 683 aa13.22□□□□□ -0.29
LIG1-201ENST00000263274 SNUPNO95149 360 aaKnown RBP13.22□□□□□ -0.29
LIG1-201ENST00000263274 T-ENOLP0DO92 83 aa13.22□□□□□ -0.29
LIG1-201ENST00000263274 KDELR1P24390 212 aa13.22□□□□□ -0.29
LIG1-201ENST00000263274 BACE1P56817 501 aa13.22□□□□□ -0.29
LIG1-201ENST00000263274 TGFB2P61812 414 aa13.22□□□□□ -0.29
LIG1-201ENST00000263274 MOGSQ13724 837 aa13.22□□□□□ -0.29
LIG1-201ENST00000263274 OASLQ15646 514 aaKnown RBP13.22□□□□□ -0.29
LIG1-201ENST00000263274 SGSM1Q2NKQ1 1148 aa13.22□□□□□ -0.29
LIG1-201ENST00000263274 KHDC1Q4VXA5 237 aaKnown RBP13.22□□□□□ -0.29
LIG1-201ENST00000263274 ZNF667Q5HYK9 610 aa13.22□□□□□ -0.29
LIG1-201ENST00000263274 SH3PXD2AQ5TCZ1 1133 aa13.22□□□□□ -0.29
LIG1-201ENST00000263274 ZBTB8OSQ8IWT0 167 aa13.22□□□□□ -0.29
LIG1-201ENST00000263274 SLC7A6OSQ96CW6 309 aaPredicted RBP13.22□□□□□ -0.29
LIG1-201ENST00000263274 BATF3Q9NR55 127 aa13.22□□□□□ -0.29
LIG1-201ENST00000263274 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.22□□□□□ -0.29
LIG1-201ENST00000263274 FAM237BA0A1B0GVD1 139 aa13.21□□□□□ -0.29
LIG1-201ENST00000263274 MAFGO15525 162 aa13.21□□□□□ -0.29
LIG1-201ENST00000263274 ASS1P00966 412 aaKnown RBP13.21□□□□□ -0.29
LIG1-201ENST00000263274 PRKCBP05771 671 aa13.21□□□□□ -0.29
LIG1-201ENST00000263274 MIPP30301 263 aa13.21□□□□□ -0.29
LIG1-201ENST00000263274 ZNF200P98182 395 aaPredicted RBP13.21□□□□□ -0.29
LIG1-201ENST00000263274 KPNB1Q14974 876 aaKnown RBP13.21□□□□□ -0.29
LIG1-201ENST00000263274 DNAJC14Q6Y2X3 702 aaPredicted RBP13.21□□□□□ -0.29
LIG1-201ENST00000263274 ZNF280CQ8ND82 737 aa13.21□□□□□ -0.29
LIG1-201ENST00000263274 CFAP61Q8NHU2 1237 aa13.21□□□□□ -0.29
LIG1-201ENST00000263274 ANKRD36BP1Q96IX9 119 aa13.21□□□□□ -0.29
LIG1-201ENST00000263274 TEX13BQ9BXU2 312 aa13.21□□□□□ -0.29
LIG1-201ENST00000263274 MRPL4Q9BYD3 311 aaKnown RBP13.21□□□□□ -0.29
LIG1-201ENST00000263274 ZNF395Q9H8N7 513 aaPredicted RBP13.21□□□□□ -0.29
LIG1-201ENST00000263274 DRG1Q9Y295 367 aaKnown RBP13.21□□□□□ -0.29
LIG1-201ENST00000263274 E2F8A0AVK6 867 aa13.21□□□□□ -0.29
LIG1-201ENST00000263274 KRT36O76013 467 aa13.21□□□□□ -0.29
LIG1-201ENST00000263274 STBD1O95210 358 aa13.21□□□□□ -0.29
LIG1-201ENST00000263274 ROR1Q01973 937 aa13.21□□□□□ -0.29
LIG1-201ENST00000263274 C15orf59Q2T9L4 293 aaPredicted RBP13.21□□□□□ -0.29
LIG1-201ENST00000263274 IGDCC3Q8IVU1 814 aa13.21□□□□□ -0.29
LIG1-201ENST00000263274 ARID3BQ8IVW6 561 aaPredicted RBP13.21□□□□□ -0.29
LIG1-201ENST00000263274 WDTC1Q8N5D0 677 aa13.21□□□□□ -0.29
LIG1-201ENST00000263274 DNAJC9Q8WXX5 260 aa13.21□□□□□ -0.29
LIG1-201ENST00000263274 CAPN9O14815 690 aa13.21□□□□□ -0.3
LIG1-201ENST00000263274 TYROBPO43914 113 aa13.21□□□□□ -0.3
LIG1-201ENST00000263274 ITGAVP06756 1048 aa13.21□□□□□ -0.3
LIG1-201ENST00000263274 TPBGLP0DKB5 382 aa13.21□□□□□ -0.3
LIG1-201ENST00000263274 ALADP13716 330 aa13.21□□□□□ -0.3
LIG1-201ENST00000263274 CPXM1Q96SM3 734 aa13.21□□□□□ -0.3
LIG1-201ENST00000263274 TRIM56Q9BRZ2 755 aaKnown RBP13.21□□□□□ -0.3
LIG1-201ENST00000263274 PIH1D1Q9NWS0 290 aaKnown RBP13.21□□□□□ -0.3
LIG1-201ENST00000263274 MYH9P35579 1960 aaKnown RBP13.2□□□□□ -0.3
LIG1-201ENST00000263274 B2RBV5 119 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 H3BRJ5 948 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 CCDC22O60826 627 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 LUC7L3O95232 432 aaKnown RBP13.2□□□□□ -0.3
LIG1-201ENST00000263274 CXCL8P10145 99 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 SKIV2L2P42285 1042 aaKnown RBP13.2□□□□□ -0.3
LIG1-201ENST00000263274 RAB6CQ53S08 254 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 MROH9Q5TGP6 573 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms