RNA–Protein interactions for RNA: ENST00000054666.10

VAMP3-201, Transcript of vesicle associated membrane protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAMP3, Length 2,205 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-201ENST00000054666 AP5M1Q9H0R1 490 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 NXF3Q9H4D5 531 aaKnown RBP8.66□□□□□ -1.02
VAMP3-201ENST00000054666 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.66□□□□□ -1.02
VAMP3-201ENST00000054666 CNTN3Q9P232 1028 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 TUBGCP4Q9UGJ1 667 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 GNEQ9Y223 722 aaKnown RBP8.66□□□□□ -1.02
VAMP3-201ENST00000054666 EXOC1LA0A1B0GW35 172 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 C2CD4BA6NLJ0 364 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 TRUB2O95900 331 aaKnown RBP8.66□□□□□ -1.02
VAMP3-201ENST00000054666 MYL3P08590 195 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 ZSCAN5DPP0CG00 497 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 PECAM1P16284 738 aaPredicted RBP8.66□□□□□ -1.02
VAMP3-201ENST00000054666 SDC4P31431 198 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 PNPLA4P41247 253 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 RGS7P49802 495 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 PSEN2P49810 448 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 CDH6P55285 790 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 TFDP2Q14188 446 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 TAF1CQ15572 869 aaPredicted RBP8.66□□□□□ -1.02
VAMP3-201ENST00000054666 TAZQ16635 292 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 CDO1Q16878 200 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 TNFAIP8L3Q5GJ75 292 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 FAM47CQ5HY64 1035 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 FBXO47Q5MNV8 452 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 MORN1Q5T089 497 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 PPP1R26Q5T8A7 1209 aaPredicted RBP8.66□□□□□ -1.02
VAMP3-201ENST00000054666 GKAP1Q5VSY0 366 aaPredicted RBP8.66□□□□□ -1.02
VAMP3-201ENST00000054666 ACOT1Q86TX2 421 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 ZDHHC17Q8IUH5 632 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 MAP7D3Q8IWC1 876 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 C10orf67Q8IYJ2 551 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 CACNA2D3Q8IZS8 1091 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 ARFGAP1Q8N6T3 406 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 C12orf29Q8N999 325 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 DNAJB3Q8WWF6 145 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 RXFP2Q8WXD0 754 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 PWWP2AQ96N64 755 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 MRPL45Q9BRJ2 306 aaKnown RBP8.66□□□□□ -1.02
VAMP3-201ENST00000054666 FAM49BQ9NUQ9 324 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 GGA2Q9UJY4 613 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 HES2Q9Y543 173 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 TRIP11Q15643 1979 aa8.66□□□□□ -1.02
VAMP3-201ENST00000054666 A8MXQ7 604 aa8.65□□□□□ -1.02
VAMP3-201ENST00000054666 SMAPO00193 183 aa8.65□□□□□ -1.02
VAMP3-201ENST00000054666 TULP2O00295 520 aa8.65□□□□□ -1.02
VAMP3-201ENST00000054666 PIK3R2O00459 728 aa8.65□□□□□ -1.02
VAMP3-201ENST00000054666 DPYSL4O14531 572 aa8.65□□□□□ -1.02
VAMP3-201ENST00000054666 GNAT1P11488 350 aa8.65□□□□□ -1.02
VAMP3-201ENST00000054666 ETS1P14921 441 aa8.65□□□□□ -1.02
VAMP3-201ENST00000054666 CYP3A5P20815 502 aa8.65□□□□□ -1.02
VAMP3-201ENST00000054666 RGS2P41220 211 aa8.65□□□□□ -1.02
VAMP3-201ENST00000054666 CTCFP49711 727 aaPredicted RBP8.65□□□□□ -1.02
VAMP3-201ENST00000054666 HUNKP57058 714 aa8.65□□□□□ -1.02
VAMP3-201ENST00000054666 EIF3EP60228 445 aaKnown RBP8.65□□□□□ -1.02
VAMP3-201ENST00000054666 SNX17Q15036 470 aa8.65□□□□□ -1.02
VAMP3-201ENST00000054666 HIF1AQ16665 826 aa8.65□□□□□ -1.02
VAMP3-201ENST00000054666 CCDC38Q502W7 563 aa8.65□□□□□ -1.02
VAMP3-201ENST00000054666 PRAMEF19Q5SWL8 479 aa8.65□□□□□ -1.02
VAMP3-201ENST00000054666 RNASEH2BQ5TBB1 312 aaKnown RBP8.65□□□□□ -1.02
VAMP3-201ENST00000054666 C9orf57Q5W0N0 161 aa8.65□□□□□ -1.02
VAMP3-201ENST00000054666 PPIL6Q8IXY8 311 aa8.65□□□□□ -1.02
VAMP3-201ENST00000054666 GLIS1Q8NBF1 620 aa8.65□□□□□ -1.02
VAMP3-201ENST00000054666 CMASQ8NFW8 434 aaPredicted RBP8.65□□□□□ -1.02
VAMP3-201ENST00000054666 SOCS4Q8WXH5 440 aa8.65□□□□□ -1.02
VAMP3-201ENST00000054666 KAT2BQ92831 832 aa8.65□□□□□ -1.02
VAMP3-201ENST00000054666 ZMAT2Q96NC0 199 aaKnown RBP8.65□□□□□ -1.02
VAMP3-201ENST00000054666 TSPAN18Q96SJ8 248 aa8.65□□□□□ -1.02
VAMP3-201ENST00000054666 PHACTR1Q9C0D0 580 aa8.65□□□□□ -1.02
VAMP3-201ENST00000054666 RASSF4Q9H2L5 321 aa8.65□□□□□ -1.02
VAMP3-201ENST00000054666 NGRNQ9NPE2 291 aaKnown RBP8.65□□□□□ -1.02
VAMP3-201ENST00000054666 LGALS13Q9UHV8 139 aa8.65□□□□□ -1.02
VAMP3-201ENST00000054666 SCN1AP35498 2009 aa8.65□□□□□ -1.02
VAMP3-201ENST00000054666 C17orf102A2RUQ5 167 aa8.65□□□□□ -1.03
VAMP3-201ENST00000054666 C5orf60A6NFR6 353 aa8.65□□□□□ -1.03
VAMP3-201ENST00000054666 MANSC4A6NHS7 340 aaPredicted RBP8.65□□□□□ -1.03
VAMP3-201ENST00000054666 PPEF2O14830 753 aa8.65□□□□□ -1.03
VAMP3-201ENST00000054666 CD48P09326 243 aa8.65□□□□□ -1.03
VAMP3-201ENST00000054666 BCAT1P54687 386 aa8.65□□□□□ -1.03
VAMP3-201ENST00000054666 ARL4CP56559 192 aa8.65□□□□□ -1.03
VAMP3-201ENST00000054666 ROR1Q01973 937 aa8.65□□□□□ -1.03
VAMP3-201ENST00000054666 NR1H3Q13133 447 aa8.65□□□□□ -1.03
VAMP3-201ENST00000054666 PDK2Q15119 407 aa8.65□□□□□ -1.03
VAMP3-201ENST00000054666 SV2CQ496J9 727 aa8.65□□□□□ -1.03
VAMP3-201ENST00000054666 OLFML2BQ68BL8 750 aa8.65□□□□□ -1.03
VAMP3-201ENST00000054666 SCYL2Q6P3W7 929 aa8.65□□□□□ -1.03
VAMP3-201ENST00000054666 EXOC3L1Q86VI1 746 aa8.65□□□□□ -1.03
VAMP3-201ENST00000054666 TAX1BP1Q86VP1 789 aa8.65□□□□□ -1.03
VAMP3-201ENST00000054666 TTC30AQ86WT1 665 aa8.65□□□□□ -1.03
VAMP3-201ENST00000054666 OTUD6BQ8N6M0 293 aa8.65□□□□□ -1.03
VAMP3-201ENST00000054666 SPATA18Q8TC71 538 aa8.65□□□□□ -1.03
VAMP3-201ENST00000054666 ATXN2LQ8WWM7 1075 aaKnown RBP8.65□□□□□ -1.03
VAMP3-201ENST00000054666 PPM1EQ8WY54 764 aa8.65□□□□□ -1.03
VAMP3-201ENST00000054666 P3H4Q92791 437 aa8.65□□□□□ -1.03
VAMP3-201ENST00000054666 C18orf25Q96B23 403 aaPredicted RBP8.65□□□□□ -1.03
VAMP3-201ENST00000054666 LENG1Q96BZ8 264 aaPredicted RBP8.65□□□□□ -1.03
VAMP3-201ENST00000054666 CABS1Q96KC9 395 aa8.65□□□□□ -1.03
VAMP3-201ENST00000054666 TBCBQ99426 244 aa8.65□□□□□ -1.03
VAMP3-201ENST00000054666 ADAM7Q9H2U9 754 aa8.65□□□□□ -1.03
VAMP3-201ENST00000054666 SNX25Q9H3E2 840 aa8.65□□□□□ -1.03
VAMP3-201ENST00000054666 VPS37BQ9H9H4 285 aa8.65□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms