RNA–Protein interactions for RNA: YOR048C

RAT1, Transcript of Nuclear 5' to 3' single-stranded RNA exonuclease, yeast

Gene RAT1, Length 3,021 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RAT1	YOR048C	YPL073C	P40323	161 aa		4.2	□□□□□ -1.74
RAT1	YOR048C	UBC7	Q02159	165 aa		4.2	□□□□□ -1.74
RAT1	YOR048C	YPL261C	Q08976	102 aa		4.2	□□□□□ -1.74
RAT1	YOR048C	PHO85	P17157	305 aa		4.2	□□□□□ -1.74
RAT1	YOR048C	LDB16	P25587	256 aa		4.2	□□□□□ -1.74
RAT1	YOR048C	ARO2	P28777	376 aa	Known RBP	4.2	□□□□□ -1.74
RAT1	YOR048C	NUP42	P49686	430 aa	Known RBP	4.2	□□□□□ -1.74
RAT1	YOR048C	PCL2	P25693	308 aa		4.19	□□□□□ -1.74
RAT1	YOR048C	YGL088W	P53151	121 aa		4.19	□□□□□ -1.74
RAT1	YOR048C	YNR077C	P53758	84 aa		4.19	□□□□□ -1.74
RAT1	YOR048C	YNL190W	P53872	204 aa		4.19	□□□□□ -1.74
RAT1	YOR048C	EOS1	P53938	366 aa		4.19	□□□□□ -1.74
RAT1	YOR048C	ELC1	Q03071	99 aa		4.19	□□□□□ -1.74
RAT1	YOR048C	OXA1	P39952	402 aa		4.19	□□□□□ -1.74
RAT1	YOR048C	DIA1	P54005	336 aa		4.19	□□□□□ -1.74
RAT1	YOR048C	ATG33	Q06485	197 aa		4.19	□□□□□ -1.74
RAT1	YOR048C	RPL27A	P0C2H6	136 aa	Known RBP	4.19	□□□□□ -1.74
RAT1	YOR048C	YCR007C	P25354	239 aa		4.19	□□□□□ -1.74
RAT1	YOR048C	FPR2	P32472	135 aa		4.19	□□□□□ -1.74
RAT1	YOR048C	SGN1	P40561	250 aa	Known RBP RIP-Chip data	4.19	□□□□□ -1.74	not detected
RAT1	YOR048C	YML122C	Q03207	126 aa		4.19	□□□□□ -1.74
RAT1	YOR048C	SCW10	Q04951	389 aa		4.19	□□□□□ -1.74
RAT1	YOR048C	RPL12A	P0CX53	165 aa	Known RBP	4.18	□□□□□ -1.74
RAT1	YOR048C	RPL12B	P0CX54	165 aa		4.18	□□□□□ -1.74
RAT1	YOR048C	ANB1	P19211	157 aa		4.18	□□□□□ -1.74
RAT1	YOR048C	AGA1	P32323	725 aa		4.18	□□□□□ -1.74
RAT1	YOR048C	YKL070W	P36087	169 aa		4.18	□□□□□ -1.74
RAT1	YOR048C	GPI18	P38211	433 aa		4.18	□□□□□ -1.74
RAT1	YOR048C	YHR140W	P38842	239 aa		4.18	□□□□□ -1.74
RAT1	YOR048C	YDR042C	Q03205	200 aa		4.18	□□□□□ -1.74
RAT1	YOR048C	YIL102C-A	Q2V2P5	75 aa		4.18	□□□□□ -1.74
RAT1	YOR048C	RPL27B	P0C2H7	136 aa	Known RBP	4.18	□□□□□ -1.74
RAT1	YOR048C	YHL037C	P38733	133 aa		4.18	□□□□□ -1.74
RAT1	YOR048C	GPI19	Q04082	140 aa		4.18	□□□□□ -1.74
RAT1	YOR048C	TIM22	Q12328	207 aa		4.18	□□□□□ -1.74
RAT1	YOR048C	INO4	P13902	151 aa		4.17	□□□□□ -1.74
RAT1	YOR048C	KTI12	P34253	313 aa	Known RBP	4.17	□□□□□ -1.74
RAT1	YOR048C	PRS4	P38063	326 aa	Predicted RBP	4.17	□□□□□ -1.74
RAT1	YOR048C	CIN5	P40917	295 aa		4.17	□□□□□ -1.74
RAT1	YOR048C	YIP1	P53039	248 aa		4.17	□□□□□ -1.74
RAT1	YOR048C	SUR7	P54003	302 aa		4.17	□□□□□ -1.74
RAT1	YOR048C	YOR011W-A	Q3E807	68 aa		4.17	□□□□□ -1.74
RAT1	YOR048C	TOR1	P35169	2470 aa		4.17	□□□□□ -1.74
RAT1	YOR048C	ATP15	P21306	62 aa		4.17	□□□□□ -1.74
RAT1	YOR048C	PRE3	P38624	215 aa		4.17	□□□□□ -1.74
RAT1	YOR048C	YHL044W	P38727	235 aa		4.17	□□□□□ -1.74
RAT1	YOR048C	CAX4	P53223	239 aa		4.17	□□□□□ -1.74
RAT1	YOR048C	YPR013C	Q12145	317 aa		4.17	□□□□□ -1.74
RAT1	YOR048C	HTL1	Q9URQ5	78 aa		4.17	□□□□□ -1.74
RAT1	YOR048C	MRP49	P32388	137 aa		4.16	□□□□□ -1.74
RAT1	YOR048C	YER085C	P40058	173 aa		4.16	□□□□□ -1.74
RAT1	YOR048C	MET32	Q12041	191 aa		4.16	□□□□□ -1.74
RAT1	YOR048C	YLR112W	Q12130	139 aa		4.16	□□□□□ -1.74
RAT1	YOR048C	ISD11	Q6Q560	94 aa		4.16	□□□□□ -1.74
RAT1	YOR048C	UTP20	P35194	2493 aa	Known RBP	4.16	□□□□□ -1.74
RAT1	YOR048C	VAR1	P02381	398 aa		4.16	□□□□□ -1.74
RAT1	YOR048C	YER076C	P40049	302 aa		4.16	□□□□□ -1.74
RAT1	YOR048C	YPT53	P36019	220 aa		4.16	□□□□□ -1.74
RAT1	YOR048C	GLO1	P50107	326 aa		4.16	□□□□□ -1.74
RAT1	YOR048C	NUM1	Q00402	2748 aa		4.16	□□□□□ -1.74
RAT1	YOR048C	COA3	Q3E7B2	85 aa		4.15	□□□□□ -1.74
RAT1	YOR048C	CYC7	P00045	113 aa		4.15	□□□□□ -1.75
RAT1	YOR048C	YBL112C	Q3E7Y4	105 aa		4.15	□□□□□ -1.75
RAT1	YOR048C	DSE2	P38844	325 aa		4.14	□□□□□ -1.75
RAT1	YOR048C	YFR035C	P43608	114 aa		4.14	□□□□□ -1.75
RAT1	YOR048C	YPR053C	Q6Q5F3	151 aa		4.14	□□□□□ -1.75
RAT1	YOR048C	RPL28	P02406	149 aa	Known RBP	4.14	□□□□□ -1.75
RAT1	YOR048C	IES6	P32617	166 aa		4.14	□□□□□ -1.75
RAT1	YOR048C	YBR209W	P38311	105 aa		4.14	□□□□□ -1.75
RAT1	YOR048C	TIM10	P87108	93 aa		4.14	□□□□□ -1.75
RAT1	YOR048C	IGO2	Q9P305	131 aa		4.14	□□□□□ -1.75
RAT1	YOR048C	RPL32	P38061	130 aa	Known RBP	4.13	□□□□□ -1.75
RAT1	YOR048C	YNL046W	P53956	172 aa		4.13	□□□□□ -1.75
RAT1	YOR048C	AIM11	P87275	137 aa		4.13	□□□□□ -1.75
RAT1	YOR048C	YKR041W	P36134	250 aa		4.13	□□□□□ -1.75
RAT1	YOR048C	YML079W	Q03629	201 aa		4.13	□□□□□ -1.75
RAT1	YOR048C	CMC1	P36064	111 aa		4.13	□□□□□ -1.75
RAT1	YOR048C	FCF1	Q05498	189 aa	Predicted RBP	4.13	□□□□□ -1.75
RAT1	YOR048C	SIM1	P40472	476 aa		4.12	□□□□□ -1.75
RAT1	YOR048C	OST2	P46964	130 aa		4.12	□□□□□ -1.75
RAT1	YOR048C	YNL092W	P53934	400 aa		4.12	□□□□□ -1.75
RAT1	YOR048C	MGR2	Q02889	113 aa		4.12	□□□□□ -1.75
RAT1	YOR048C	PRM3	Q08931	133 aa		4.12	□□□□□ -1.75
RAT1	YOR048C	COX17	Q12287	69 aa		4.12	□□□□□ -1.75
RAT1	YOR048C	YLR342W-A	Q3E810	57 aa		4.12	□□□□□ -1.75
RAT1	YOR048C	NHP2	P32495	156 aa	Predicted RBP	4.12	□□□□□ -1.75
RAT1	YOR048C	VMA11	P32842	164 aa		4.12	□□□□□ -1.75
RAT1	YOR048C	YKL044W	P36092	106 aa		4.12	□□□□□ -1.75
RAT1	YOR048C	WSC3	Q12215	556 aa		4.12	□□□□□ -1.75
RAT1	YOR048C	YER181C	P40097	107 aa		4.11	□□□□□ -1.75
RAT1	YOR048C	YMR317W	Q04893	1140 aa		4.11	□□□□□ -1.75
RAT1	YOR048C	RPL15A	P05748	204 aa	Known RBP	4.11	□□□□□ -1.75
RAT1	YOR048C	TOA2	P32774	122 aa		4.11	□□□□□ -1.75
RAT1	YOR048C	PFY1	P07274	126 aa		4.11	□□□□□ -1.75
RAT1	YOR048C	YER135C	P40082	130 aa		4.11	□□□□□ -1.75
RAT1	YOR048C	POR2	P40478	281 aa		4.11	□□□□□ -1.75
RAT1	YOR048C	YFL065C	P43539	102 aa		4.11	□□□□□ -1.75
RAT1	YOR048C	YPR203W	Q08994	102 aa		4.11	□□□□□ -1.75
RAT1	YOR048C	YOR097C	Q12274	175 aa	Predicted RBP	4.11	□□□□□ -1.75
RAT1	YOR048C	RPL18A	P0CX49	186 aa	Known RBP	4.1	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 77.1 ms