RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeast

Gene RPN11, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN11	YFR004W	MSL1	P40567	111 aa	Predicted RBP	4.71	□□□□□ -1.66
RPN11	YFR004W	YPI1	P43587	155 aa		4.71	□□□□□ -1.66
RPN11	YFR004W	YGL230C	P53074	147 aa		4.71	□□□□□ -1.66
RPN11	YFR004W	DPP1	Q05521	289 aa		4.71	□□□□□ -1.66
RPN11	YFR004W	RPL31A	P0C2H8	113 aa	Known RBP	4.7	□□□□□ -1.66
RPN11	YFR004W	HAP3	P13434	144 aa		4.7	□□□□□ -1.66
RPN11	YFR004W	SEC11	P15367	167 aa		4.7	□□□□□ -1.66
RPN11	YFR004W	CPT1	P17898	393 aa		4.7	□□□□□ -1.66
RPN11	YFR004W	POP3	P53833	195 aa	Predicted RBP	4.7	□□□□□ -1.66
RPN11	YFR004W	UBC7	Q02159	165 aa		4.7	□□□□□ -1.66
RPN11	YFR004W	YMR181C	Q03231	154 aa		4.7	□□□□□ -1.66
RPN11	YFR004W	YPL162C	Q12042	273 aa		4.7	□□□□□ -1.66
RPN11	YFR004W	RPS8A	P0CX39	200 aa	Known RBP	4.69	□□□□□ -1.66
RPN11	YFR004W	RPS8B	P0CX40	200 aa	Known RBP	4.69	□□□□□ -1.66
RPN11	YFR004W	MRPL20	P22354	195 aa	Predicted RBP	4.69	□□□□□ -1.66
RPN11	YFR004W	UTR5	P32630	166 aa		4.69	□□□□□ -1.66
RPN11	YFR004W	FYV4	P38783	130 aa	Predicted RBP	4.69	□□□□□ -1.66
RPN11	YFR004W	PET8	P38921	284 aa		4.69	□□□□□ -1.66
RPN11	YFR004W	CWC27	Q02770	301 aa		4.69	□□□□□ -1.66
RPN11	YFR004W	PAU23	Q07987	124 aa		4.69	□□□□□ -1.66
RPN11	YFR004W	PAU17	Q12370	124 aa		4.69	□□□□□ -1.66
RPN11	YFR004W	YKR032W	P36127	104 aa		4.68	□□□□□ -1.66
RPN11	YFR004W	COX16	P47081	118 aa		4.68	□□□□□ -1.66
RPN11	YFR004W	YGR025W	P53216	100 aa		4.68	□□□□□ -1.66
RPN11	YFR004W	VPS71	Q03433	280 aa		4.68	□□□□□ -1.66
RPN11	YFR004W	YLR342W-A	Q3E810	57 aa		4.68	□□□□□ -1.66
RPN11	YFR004W	YCR041W	P37265	110 aa		4.67	□□□□□ -1.66
RPN11	YFR004W	PRS4	P38063	326 aa	Predicted RBP	4.67	□□□□□ -1.66
RPN11	YFR004W	LCB3	P47013	409 aa		4.67	□□□□□ -1.66
RPN11	YFR004W	YIL014C-A	Q02598	104 aa		4.67	□□□□□ -1.66
RPN11	YFR004W	GPI19	Q04082	140 aa		4.67	□□□□□ -1.66
RPN11	YFR004W	GRH1	Q04410	372 aa	Known RBP	4.67	□□□□□ -1.66
RPN11	YFR004W	YOL160W	Q08321	113 aa		4.67	□□□□□ -1.66
RPN11	YFR004W	RPL27A	P0C2H6	136 aa	Known RBP	4.66	□□□□□ -1.66
RPN11	YFR004W	YCR007C	P25354	239 aa		4.66	□□□□□ -1.66
RPN11	YFR004W	VHS2	P40463	436 aa		4.66	□□□□□ -1.66
RPN11	YFR004W	POR2	P40478	281 aa		4.66	□□□□□ -1.66
RPN11	YFR004W	MST27	P53176	234 aa		4.66	□□□□□ -1.66
RPN11	YFR004W	UPS3	Q04006	179 aa		4.66	□□□□□ -1.66
RPN11	YFR004W	TVP18	Q04767	167 aa		4.66	□□□□□ -1.66
RPN11	YFR004W	AQY1	P0CD91	305 aa		4.65	□□□□□ -1.67
RPN11	YFR004W	RPL12A	P0CX53	165 aa	Known RBP	4.65	□□□□□ -1.67
RPN11	YFR004W	RPL12B	P0CX54	165 aa		4.65	□□□□□ -1.67
RPN11	YFR004W	YHR140W	P38842	239 aa		4.65	□□□□□ -1.67
RPN11	YFR004W	YDR366C	P87287	132 aa		4.65	□□□□□ -1.67
RPN11	YFR004W	YML122C	Q03207	126 aa		4.65	□□□□□ -1.67
RPN11	YFR004W	YLR050C	Q12155	161 aa	Known RBP	4.65	□□□□□ -1.67
RPN11	YFR004W	TIM22	Q12328	207 aa		4.65	□□□□□ -1.67
RPN11	YFR004W	PRE1	P22141	198 aa	Known RBP	4.64	□□□□□ -1.67
RPN11	YFR004W	YCR023C	P25351	611 aa		4.64	□□□□□ -1.67
RPN11	YFR004W	MIC26	P50087	233 aa		4.64	□□□□□ -1.67
RPN11	YFR004W	YGR219W	P53307	113 aa		4.64	□□□□□ -1.67
RPN11	YFR004W	ATG39	Q06159	398 aa		4.64	□□□□□ -1.67
RPN11	YFR004W	GEP3	Q08622	556 aa		4.64	□□□□□ -1.67
RPN11	YFR004W	APS1	P35181	156 aa		4.63	□□□□□ -1.67
RPN11	YFR004W	YKR070W	P36151	352 aa	Known RBP	4.63	□□□□□ -1.67
RPN11	YFR004W	SNF11	P38956	169 aa		4.63	□□□□□ -1.67
RPN11	YFR004W	YER076C	P40049	302 aa		4.63	□□□□□ -1.67
RPN11	YFR004W	DIA1	P54005	336 aa		4.63	□□□□□ -1.67
RPN11	YFR004W	BET5	Q03630	159 aa		4.63	□□□□□ -1.67
RPN11	YFR004W	UTP23	Q12339	254 aa	Known RBP	4.63	□□□□□ -1.67
RPN11	YFR004W	YOL085C	Q99345	113 aa		4.63	□□□□□ -1.67
RPN11	YFR004W	HTL1	Q9URQ5	78 aa		4.63	□□□□□ -1.67
RPN11	YFR004W	MIC12	P38341	106 aa		4.62	□□□□□ -1.67
RPN11	YFR004W	MST28	P39552	234 aa		4.62	□□□□□ -1.67
RPN11	YFR004W	CAB4	P53332	305 aa		4.62	□□□□□ -1.67
RPN11	YFR004W	ATP23	P53722	227 aa		4.62	□□□□□ -1.67
RPN11	YFR004W	YDR042C	Q03205	200 aa		4.62	□□□□□ -1.67
RPN11	YFR004W	YPR013C	Q12145	317 aa		4.62	□□□□□ -1.67
RPN11	YFR004W	YLR363W-A	Q3E747	85 aa		4.62	□□□□□ -1.67
RPN11	YFR004W	RPL27B	P0C2H7	136 aa	Known RBP	4.61	□□□□□ -1.67
RPN11	YFR004W	TOS8	P53147	276 aa		4.61	□□□□□ -1.67
RPN11	YFR004W	YMR103C	Q04436	120 aa		4.61	□□□□□ -1.67
RPN11	YFR004W	SAL1	D6W196	494 aa		4.6	□□□□□ -1.67
RPN11	YFR004W	YPR170W-B	P0C5R9	85 aa		4.6	□□□□□ -1.67
RPN11	YFR004W	RPF1	P38805	295 aa	Known RBP	4.6	□□□□□ -1.67
RPN11	YFR004W	SPI1	P40092	148 aa		4.6	□□□□□ -1.67
RPN11	YFR004W	MGR2	Q02889	113 aa		4.6	□□□□□ -1.67
RPN11	YFR004W	DGA1	Q08650	418 aa		4.6	□□□□□ -1.67
RPN11	YFR004W	PRM7	Q12459	698 aa		4.6	□□□□□ -1.67
RPN11	YFR004W	DFM1	Q12743	341 aa	Known RBP	4.6	□□□□□ -1.67
RPN11	YFR004W	YOR011W-A	Q3E807	68 aa		4.6	□□□□□ -1.67
RPN11	YFR004W	MBF1	O14467	151 aa	Known RBP	4.59	□□□□□ -1.67
RPN11	YFR004W	PFY1	P07274	126 aa		4.59	□□□□□ -1.67
RPN11	YFR004W	HMRA2	P0CY13	119 aa		4.59	□□□□□ -1.67
RPN11	YFR004W	INO2	P26798	304 aa		4.59	□□□□□ -1.67
RPN11	YFR004W	KTI12	P34253	313 aa	Known RBP	4.59	□□□□□ -1.67
RPN11	YFR004W	YHR022C	P38763	256 aa		4.59	□□□□□ -1.67
RPN11	YFR004W	FIP1	P45976	327 aa		4.59	□□□□□ -1.67
RPN11	YFR004W	VPS55	P47111	140 aa		4.59	□□□□□ -1.67
RPN11	YFR004W	CAX4	P53223	239 aa		4.59	□□□□□ -1.67
RPN11	YFR004W	YLR112W	Q12130	139 aa		4.59	□□□□□ -1.67
RPN11	YFR004W	AGA1	P32323	725 aa		4.58	□□□□□ -1.68
RPN11	YFR004W	MRP49	P32388	137 aa		4.58	□□□□□ -1.68
RPN11	YFR004W	YKL044W	P36092	106 aa		4.58	□□□□□ -1.68
RPN11	YFR004W	YPL073C	P40323	161 aa		4.58	□□□□□ -1.68
RPN11	YFR004W	MRPL49	P40858	161 aa	Predicted RBP	4.58	□□□□□ -1.68
RPN11	YFR004W	YIP3	P53633	176 aa		4.58	□□□□□ -1.68
RPN11	YFR004W	POP7	P38291	140 aa		4.57	□□□□□ -1.68
RPN11	YFR004W	YML079W	Q03629	201 aa		4.57	□□□□□ -1.68

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