RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	COX12	Q01519	83 aa		8.04	□□□□□ -1.12
VPS60	YDR486C	RPL16B	P26785	198 aa	Known RBP	8.03	□□□□□ -1.12
VPS60	YDR486C	MLF3	P32047	452 aa		8.03	□□□□□ -1.12
VPS60	YDR486C	FRS1	P15624	595 aa	Known RBP	8.02	□□□□□ -1.13
VPS60	YDR486C	SDH8	P38345	138 aa		8.02	□□□□□ -1.13
VPS60	YDR486C	YDR366C	P87287	132 aa		8.02	□□□□□ -1.13
VPS60	YDR486C	TMA17	Q12513	150 aa		8.02	□□□□□ -1.13
VPS60	YDR486C	WIP1	Q2V2P8	89 aa		8.02	□□□□□ -1.13
VPS60	YDR486C	YKR032W	P36127	104 aa		8.01	□□□□□ -1.13
VPS60	YDR486C	NRG2	P38082	220 aa		8.01	□□□□□ -1.13
VPS60	YDR486C	BRP1	P53194	125 aa		8.01	□□□□□ -1.13
VPS60	YDR486C	DXO1	Q06349	442 aa		8.01	□□□□□ -1.13
VPS60	YDR486C	YPR053C	Q6Q5F3	151 aa		8.01	□□□□□ -1.13
VPS60	YDR486C	CYC7	P00045	113 aa		8	□□□□□ -1.13
VPS60	YDR486C	VHS2	P40463	436 aa		8	□□□□□ -1.13
VPS60	YDR486C	SSS1	P35179	80 aa		7.99	□□□□□ -1.13
VPS60	YDR486C	PET8	P38921	284 aa		7.99	□□□□□ -1.13
VPS60	YDR486C	RRT13	P40042	185 aa		7.99	□□□□□ -1.13
VPS60	YDR486C	MED7	Q08278	222 aa		7.99	□□□□□ -1.13
VPS60	YDR486C	CMC2	Q3E7A4	109 aa		7.99	□□□□□ -1.13
VPS60	YDR486C	AIM34	Q03673	198 aa		7.98	□□□□□ -1.13
VPS60	YDR486C	CUE4	Q04201	117 aa	Predicted RBP	7.98	□□□□□ -1.13
VPS60	YDR486C	ELF1	P36053	145 aa		7.97	□□□□□ -1.13
VPS60	YDR486C	TVP18	Q04767	167 aa		7.97	□□□□□ -1.13
VPS60	YDR486C	GSP1	P32835	219 aa	Known RBP	7.96	□□□□□ -1.14
VPS60	YDR486C	GSP2	P32836	220 aa	Known RBP	7.96	□□□□□ -1.14
VPS60	YDR486C	SEC72	P39742	193 aa	Known RBP	7.96	□□□□□ -1.14
VPS60	YDR486C	YER134C	P40081	178 aa		7.96	□□□□□ -1.14
VPS60	YDR486C	YNL200C	P40165	246 aa	Known RBP	7.96	□□□□□ -1.14
VPS60	YDR486C	YCR001W	P25347	104 aa		7.95	□□□□□ -1.14
VPS60	YDR486C	AUA1	P32450	94 aa		7.95	□□□□□ -1.14
VPS60	YDR486C	YCH1	P42937	148 aa		7.95	□□□□□ -1.14
VPS60	YDR486C	OST3	P48439	350 aa		7.95	□□□□□ -1.14
VPS60	YDR486C	YGL118C	P53132	145 aa		7.95	□□□□□ -1.14
VPS60	YDR486C	SEN15	Q04675	128 aa		7.95	□□□□□ -1.14
VPS60	YDR486C	YLR042C	Q07990	161 aa		7.95	□□□□□ -1.14
VPS60	YDR486C	KTI12	P34253	313 aa	Known RBP	7.94	□□□□□ -1.14
VPS60	YDR486C	TEM1	P38987	245 aa		7.93	□□□□□ -1.14
VPS60	YDR486C	YPS5	P53057	165 aa		7.93	□□□□□ -1.14
VPS60	YDR486C	RPL42A	P0CX27	106 aa	Known RBP	7.92	□□□□□ -1.14
VPS60	YDR486C	RPL42B	P0CX28	106 aa	Known RBP	7.92	□□□□□ -1.14
VPS60	YDR486C	YIL014C-A	Q02598	104 aa		7.92	□□□□□ -1.14
VPS60	YDR486C	RDS3	Q06835	107 aa	Predicted RBP	7.92	□□□□□ -1.14
VPS60	YDR486C	ERG27	Q12452	347 aa	Known RBP	7.92	□□□□□ -1.14
VPS60	YDR486C	SAL1	D6W196	494 aa		7.91	□□□□□ -1.14
VPS60	YDR486C	YCR023C	P25351	611 aa		7.91	□□□□□ -1.14
VPS60	YDR486C	VAM10	Q08474	114 aa		7.91	□□□□□ -1.14
VPS60	YDR486C	YCR075W-A	Q3E830	75 aa		7.91	□□□□□ -1.14
VPS60	YDR486C	YIL134C-A	Q45U18	67 aa		7.91	□□□□□ -1.14
VPS60	YDR486C	YPR014C	Q6B0W2	109 aa		7.91	□□□□□ -1.14
VPS60	YDR486C	YER076C	P40049	302 aa		7.9	□□□□□ -1.14
VPS60	YDR486C	YNL217W	P40152	326 aa		7.9	□□□□□ -1.14
VPS60	YDR486C	ATP23	P53722	227 aa		7.9	□□□□□ -1.14
VPS60	YDR486C	MGR2	Q02889	113 aa		7.9	□□□□□ -1.14
VPS60	YDR486C	SCW10	Q04951	389 aa		7.9	□□□□□ -1.14
VPS60	YDR486C	YBR126W-A	Q8TGU7	68 aa		7.9	□□□□□ -1.14
VPS60	YDR486C	PFY1	P07274	126 aa		7.89	□□□□□ -1.15
VPS60	YDR486C	YRA2	P36036	203 aa	Known RBP RIP-Chip data	7.89	□□□□□ -1.15	not detected
VPS60	YDR486C	CDC40	P40968	455 aa	Predicted RBP	7.89	□□□□□ -1.15
VPS60	YDR486C	YJL028W	P47062	111 aa		7.89	□□□□□ -1.15
VPS60	YDR486C	PRE1	P22141	198 aa	Known RBP	7.88	□□□□□ -1.15
VPS60	YDR486C	MRPL11	P36521	249 aa	Predicted RBP	7.88	□□□□□ -1.15
VPS60	YDR486C	DCV1	P43595	202 aa		7.88	□□□□□ -1.15
VPS60	YDR486C	KRE9	P39005	276 aa		7.87	□□□□□ -1.15
VPS60	YDR486C	SGF11	Q03067	99 aa		7.87	□□□□□ -1.15
VPS60	YDR486C	DGA1	Q08650	418 aa		7.87	□□□□□ -1.15
VPS60	YDR486C	COA6	Q3E846	104 aa		7.87	□□□□□ -1.15
VPS60	YDR486C	AQY1	P0CD91	305 aa		7.86	□□□□□ -1.15
VPS60	YDR486C	GLO1	P50107	326 aa		7.86	□□□□□ -1.15
VPS60	YDR486C	FCF1	Q05498	189 aa	Predicted RBP	7.85	□□□□□ -1.15
VPS60	YDR486C	YKR070W	P36151	352 aa	Known RBP	7.84	□□□□□ -1.15
VPS60	YDR486C	POP3	P53833	195 aa	Predicted RBP	7.84	□□□□□ -1.15
VPS60	YDR486C	YGR240C-A	Q3E786	66 aa		7.84	□□□□□ -1.15
VPS60	YDR486C	YPT53	P36019	220 aa		7.83	□□□□□ -1.16
VPS60	YDR486C	TOS6	P48560	102 aa		7.83	□□□□□ -1.16
VPS60	YDR486C	HAL1	Q01766	294 aa		7.83	□□□□□ -1.16
VPS60	YDR486C	HTL1	Q9URQ5	78 aa		7.83	□□□□□ -1.16
VPS60	YDR486C	PCL2	P25693	308 aa		7.82	□□□□□ -1.16
VPS60	YDR486C	PAU16	P35994	123 aa		7.82	□□□□□ -1.16
VPS60	YDR486C	YDR042C	Q03205	200 aa		7.82	□□□□□ -1.16
VPS60	YDR486C	DPP1	Q05521	289 aa		7.82	□□□□□ -1.16
VPS60	YDR486C	ERV14	P53173	138 aa		7.81	□□□□□ -1.16
VPS60	YDR486C	UBC5	P15732	148 aa		7.8	□□□□□ -1.16
VPS60	YDR486C	PMP3	P87284	55 aa		7.8	□□□□□ -1.16
VPS60	YDR486C	YOR008C-A	Q3E7B9	74 aa		7.79	□□□□□ -1.16
VPS60	YDR486C	HMRA2	P0CY13	119 aa		7.78	□□□□□ -1.16
VPS60	YDR486C	RPL16A	P26784	199 aa	Known RBP	7.78	□□□□□ -1.16
VPS60	YDR486C	YJR146W	P47174	117 aa		7.78	□□□□□ -1.16
VPS60	YDR486C	CNL1	Q06333	122 aa		7.78	□□□□□ -1.16
VPS60	YDR486C	TPT1	Q12272	230 aa	Known RBP	7.78	□□□□□ -1.16
VPS60	YDR486C	CRC1	Q12289	327 aa		7.78	□□□□□ -1.16
VPS60	YDR486C	RPL27B	P0C2H7	136 aa	Known RBP	7.77	□□□□□ -1.17
VPS60	YDR486C	FYV4	P38783	130 aa	Predicted RBP	7.77	□□□□□ -1.17
VPS60	YDR486C	LSM8	P47093	109 aa	Known RBP	7.77	□□□□□ -1.17
VPS60	YDR486C	YLR112W	Q12130	139 aa		7.77	□□□□□ -1.17
VPS60	YDR486C	CGR1	P53188	120 aa		7.76	□□□□□ -1.17
VPS60	YDR486C	COA3	Q3E7B2	85 aa		7.76	□□□□□ -1.17
VPS60	YDR486C	YBR209W	P38311	105 aa		7.75	□□□□□ -1.17
VPS60	YDR486C	YGL088W	P53151	121 aa		7.75	□□□□□ -1.17
VPS60	YDR486C	YMR103C	Q04436	120 aa		7.75	□□□□□ -1.17

Retrieved 100 of 5,963 RNA–protein pairs in 41.8 ms