RNA–Protein interactions for RNA: Q0140

VAR1, Transcript of Mitochondrial ribosomal protein of the small subunit, yeast

Gene VAR1, Length 1,197 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VAR1	Q0140	QCR2	P07257	368 aa		-3.08	□□□□□ -2.9
VAR1	Q0140	CYB5	P40312	120 aa		-3.08	□□□□□ -2.9
VAR1	Q0140	GIM5	Q04493	163 aa		-3.08	□□□□□ -2.9
VAR1	Q0140	YCR050C	P25630	102 aa		-3.09	□□□□□ -2.9
VAR1	Q0140	YNL198C	P40166	100 aa		-3.1	□□□□□ -2.91
VAR1	Q0140	YLR255C	O13574	117 aa		-3.13	□□□□□ -2.91
VAR1	Q0140	SHU1	P38751	150 aa		-3.13	□□□□□ -2.91
VAR1	Q0140	RPC19	P28000	142 aa	Known RBP	-3.15	□□□□□ -2.91
VAR1	Q0140	YIL086C	P40503	102 aa		-3.15	□□□□□ -2.91
VAR1	Q0140	YIL014C-A	Q02598	104 aa		-3.15	□□□□□ -2.91
VAR1	Q0140	PKR1	Q03880	122 aa	Known RBP	-3.15	□□□□□ -2.91
VAR1	Q0140	YDR366C	P87287	132 aa		-3.16	□□□□□ -2.92
VAR1	Q0140	TRM732	Q03496	1420 aa		-3.17	□□□□□ -2.92
VAR1	Q0140	DER1	P38307	211 aa		-3.17	□□□□□ -2.92
VAR1	Q0140	YJL197C-A	P0C5P0	93 aa		-3.18	□□□□□ -2.92
VAR1	Q0140	AME1	P38313	324 aa		-3.22	□□□□□ -2.92
VAR1	Q0140	RPS11A	P0CX47	156 aa	Known RBP	-3.24	□□□□□ -2.93
VAR1	Q0140	RPS11B	P0CX48	156 aa	Known RBP	-3.24	□□□□□ -2.93
VAR1	Q0140	ERV14	P53173	138 aa		-3.24	□□□□□ -2.93
VAR1	Q0140	GRX3	Q03835	250 aa		-3.24	□□□□□ -2.93
VAR1	Q0140	ARC19	P33204	171 aa	Known RBP	-3.25	□□□□□ -2.93
VAR1	Q0140	YMR320W	Q04897	101 aa		-3.25	□□□□□ -2.93
VAR1	Q0140	SPC3	Q12133	184 aa		-3.25	□□□□□ -2.93
VAR1	Q0140	SLO1	Q3E784	85 aa		-3.26	□□□□□ -2.93
VAR1	Q0140	GAT4	P40569	121 aa		-3.27	□□□□□ -2.93
VAR1	Q0140	ELC1	Q03071	99 aa		-3.27	□□□□□ -2.93
VAR1	Q0140	YGR164W	P53291	111 aa		-3.28	□□□□□ -2.93
VAR1	Q0140	YCL048W-A	Q2V2Q2	79 aa		-3.28	□□□□□ -2.93
VAR1	Q0140	SEC59	P20048	519 aa		-3.29	□□□□□ -2.94
VAR1	Q0140	RPL14A	P36105	138 aa	Known RBP	-3.31	□□□□□ -2.94
VAR1	Q0140	RPL14B	P38754	138 aa	Known RBP	-3.31	□□□□□ -2.94
VAR1	Q0140	YGR039W	P53225	103 aa		-3.31	□□□□□ -2.94
VAR1	Q0140	ATG38	Q05789	226 aa	Known RBP	-3.31	□□□□□ -2.94
VAR1	Q0140	COX19	Q3E731	98 aa		-3.31	□□□□□ -2.94
VAR1	Q0140	TOP2	P06786	1428 aa	Known RBP	-3.32	□□□□□ -2.94
VAR1	Q0140	PET54	P10834	293 aa		-3.32	□□□□□ -2.94
VAR1	Q0140	MPC1	P53157	130 aa	Known RBP	-3.32	□□□□□ -2.94
VAR1	Q0140	MPC2	P38857	129 aa		-3.33	□□□□□ -2.94
VAR1	Q0140	YLR363W-A	Q3E747	85 aa		-3.33	□□□□□ -2.94
VAR1	Q0140	DNA2	P38859	1522 aa		-3.34	□□□□□ -2.94
VAR1	Q0140	COX23	P38824	151 aa		-3.34	□□□□□ -2.94
VAR1	Q0140	CMC2	Q3E7A4	109 aa		-3.34	□□□□□ -2.94
VAR1	Q0140	YIL134C-A	Q45U18	67 aa		-3.34	□□□□□ -2.94
VAR1	Q0140	SEN1	Q00416	2231 aa	Known RBP	-3.35	□□□□□ -2.95
VAR1	Q0140	TVP18	Q04767	167 aa		-3.37	□□□□□ -2.95
VAR1	Q0140	CNL1	Q06333	122 aa		-3.37	□□□□□ -2.95
VAR1	Q0140	YCR108C	Q3E819	63 aa		-3.37	□□□□□ -2.95
VAR1	Q0140	YKL044W	P36092	106 aa		-3.38	□□□□□ -2.95
VAR1	Q0140	CYC2	P38909	366 aa		-3.4	□□□□□ -2.95
VAR1	Q0140	TY1B-BL	Q12490	1755 aa		-3.4	□□□□□ -2.95
VAR1	Q0140	HMRA2	P0CY13	119 aa		-3.41	□□□□□ -2.96
VAR1	Q0140	YGR042W	P53227	271 aa		-3.41	□□□□□ -2.96
VAR1	Q0140	PAU12	P53343	120 aa		-3.41	□□□□□ -2.96
VAR1	Q0140	GPI19	Q04082	140 aa		-3.41	□□□□□ -2.96
VAR1	Q0140	YRF1-2	P40105	1681 aa		-3.42	□□□□□ -2.96
VAR1	Q0140	RPC10	P40422	70 aa		-3.42	□□□□□ -2.96
VAR1	Q0140	RAD50	P12753	1312 aa		-3.43	□□□□□ -2.96
VAR1	Q0140	HYM1	P32464	399 aa		-3.43	□□□□□ -2.96
VAR1	Q0140	PAM16	P42949	149 aa		-3.44	□□□□□ -2.96
VAR1	Q0140	YOR097C	Q12274	175 aa	Predicted RBP	-3.44	□□□□□ -2.96
VAR1	Q0140	PCC1	Q3E833	88 aa		-3.45	□□□□□ -2.96
VAR1	Q0140	OST5	Q92316	86 aa		-3.45	□□□□□ -2.96
VAR1	Q0140	YOR1	P53049	1477 aa		-3.47	□□□□□ -2.96
VAR1	Q0140	IMP2	P46972	177 aa		-3.48	□□□□□ -2.97
VAR1	Q0140	MOG1	P47123	218 aa		-3.49	□□□□□ -2.97
VAR1	Q0140	ACP1	P32463	125 aa		-3.5	□□□□□ -2.97
VAR1	Q0140	RPL22B	P56628	122 aa	Known RBP	-3.51	□□□□□ -2.97
VAR1	Q0140	RBL2	P48606	106 aa	Known RBP	-3.52	□□□□□ -2.97
VAR1	Q0140	YPL261C	Q08976	102 aa		-3.53	□□□□□ -2.97
VAR1	Q0140	TRS20	P38334	175 aa		-3.54	□□□□□ -2.98
VAR1	Q0140	YHR130C	P38834	111 aa		-3.56	□□□□□ -2.98
VAR1	Q0140	YIR020C	P40575	100 aa		-3.56	□□□□□ -2.98
VAR1	Q0140	SNF11	P38956	169 aa		-3.57	□□□□□ -2.98
VAR1	Q0140	FRQ1	Q06389	190 aa		-3.57	□□□□□ -2.98
VAR1	Q0140	TY1B-LR3	P0C2I6	1755 aa	Known RBP	-3.58	□□□□□ -2.98
VAR1	Q0140	TY1B-PR3	P0C2J1	1755 aa	Known RBP	-3.58	□□□□□ -2.98
VAR1	Q0140	YJR107C-A	P0CT86	78 aa		-3.58	□□□□□ -2.98
VAR1	Q0140	YCR101C	P25607	182 aa		-3.58	□□□□□ -2.98
VAR1	Q0140	SNN1	P48232	102 aa		-3.58	□□□□□ -2.98
VAR1	Q0140	YDR210W	Q03482	75 aa		-3.59	□□□□□ -2.98
VAR1	Q0140	PMD1	P32634	1753 aa		-3.6	□□□□□ -2.99
VAR1	Q0140	YOR376W-A	Q3E805	51 aa		-3.6	□□□□□ -2.99
VAR1	Q0140	CAT8	P39113	1433 aa		-3.61	□□□□□ -2.99
VAR1	Q0140	LSM6	Q06406	86 aa	Known RBP	-3.61	□□□□□ -2.99
VAR1	Q0140	PAU24	P38155	120 aa		-3.62	□□□□□ -2.99
VAR1	Q0140	YNL277W-A	Q3E7Z0	62 aa		-3.62	□□□□□ -2.99
VAR1	Q0140	YOL118C	Q08259	102 aa		-3.63	□□□□□ -2.99
VAR1	Q0140	YPL038W-A	Q3E7B4	63 aa		-3.63	□□□□□ -2.99
VAR1	Q0140	AIM11	P87275	137 aa		-3.68	□□□□□ -3
VAR1	Q0140	CSN9	Q03981	162 aa		-3.68	□□□□□ -3
VAR1	Q0140	YDR381C-A	Q3E6R5	114 aa		-3.69	□□□□□ -3
VAR1	Q0140	Q0144	Q9ZZW2	109 aa		-3.69	□□□□□ -3
VAR1	Q0140	MRPL38	P35996	138 aa	Predicted RBP	-3.7	□□□□□ -3
VAR1	Q0140	PAU2	P32612	120 aa		-3.71	□□□□□ -3
VAR1	Q0140	YER187W	P40102	141 aa		-3.72	□□□□□ -3
VAR1	Q0140	YDR246W-A	Q3E763	66 aa		-3.72	□□□□□ -3
VAR1	Q0140	POP7	P38291	140 aa		-3.73	□□□□□ -3.01
VAR1	Q0140	COX12	Q01519	83 aa		-3.75	□□□□□ -3.01
VAR1	Q0140	SFT1	P43682	97 aa		-3.76	□□□□□ -3.01
VAR1	Q0140	DAD1	Q12248	94 aa		-3.76	□□□□□ -3.01

Retrieved 100 of 5,963 RNA–protein pairs in 119.1 ms