RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 TBX21Q9UL17 535 aa17.78■□□□□ 0.44
CLN3-252ENST00000636907 M0QZQ0 153 aa17.77■□□□□ 0.44
CLN3-252ENST00000636907 GABBR2O75899 941 aa17.77■□□□□ 0.44
CLN3-252ENST00000636907 H2AFXP16104 143 aaPredicted RBP17.77■□□□□ 0.44
CLN3-252ENST00000636907 PKN2Q16513 984 aaKnown RBP17.77■□□□□ 0.44
CLN3-252ENST00000636907 LONRF2Q1L5Z9 754 aa17.77■□□□□ 0.44
CLN3-252ENST00000636907 FAM43BQ6ZT52 329 aaPredicted RBP17.77■□□□□ 0.44
CLN3-252ENST00000636907 TMEM110Q86TL2 294 aa17.77■□□□□ 0.44
CLN3-252ENST00000636907 EMC1Q8N766 993 aa17.77■□□□□ 0.44
CLN3-252ENST00000636907 PIWIL1Q96J94 861 aaKnown RBP17.77■□□□□ 0.44
CLN3-252ENST00000636907 RTP3Q9BQQ7 232 aa17.77■□□□□ 0.44
CLN3-252ENST00000636907 AP1M1Q9BXS5 423 aa17.77■□□□□ 0.44
CLN3-252ENST00000636907 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.77■□□□□ 0.43
CLN3-252ENST00000636907 F8VP50 259 aa17.77■□□□□ 0.43
CLN3-252ENST00000636907 CLDN5O00501 218 aa17.77■□□□□ 0.43
CLN3-252ENST00000636907 PSTPIP1O43586 416 aa17.77■□□□□ 0.43
CLN3-252ENST00000636907 PARNO95453 639 aaKnown RBP17.77■□□□□ 0.43
CLN3-252ENST00000636907 CYP11A1P05108 521 aa17.77■□□□□ 0.43
CLN3-252ENST00000636907 PSMA2P25787 234 aa17.77■□□□□ 0.43
CLN3-252ENST00000636907 GATMP50440 423 aa17.77■□□□□ 0.43
CLN3-252ENST00000636907 RBM10P98175 930 aaKnown RBP17.77■□□□□ 0.43
CLN3-252ENST00000636907 RNASELQ05823 741 aaKnown RBP17.77■□□□□ 0.43
CLN3-252ENST00000636907 PIGHQ14442 188 aaPredicted RBP17.77■□□□□ 0.43
CLN3-252ENST00000636907 SEL1L2Q5TEA6 688 aa17.77■□□□□ 0.43
CLN3-252ENST00000636907 CC2D1AQ6P1N0 951 aaPredicted RBP17.77■□□□□ 0.43
CLN3-252ENST00000636907 PAQR9Q6ZVX9 377 aa17.77■□□□□ 0.43
CLN3-252ENST00000636907 DEFB128Q7Z7B8 93 aa17.77■□□□□ 0.43
CLN3-252ENST00000636907 RHOT1Q8IXI2 618 aa17.77■□□□□ 0.43
CLN3-252ENST00000636907 NIPA2Q8N8Q9 360 aa17.77■□□□□ 0.43
CLN3-252ENST00000636907 ANKLE1Q8NAG6 615 aa17.77■□□□□ 0.43
CLN3-252ENST00000636907 SPATA18Q8TC71 538 aa17.77■□□□□ 0.43
CLN3-252ENST00000636907 FNIP1Q8TF40 1166 aa17.77■□□□□ 0.43
CLN3-252ENST00000636907 SUSD3Q96L08 255 aa17.77■□□□□ 0.43
CLN3-252ENST00000636907 LRRC1Q9BTT6 524 aa17.77■□□□□ 0.43
CLN3-252ENST00000636907 CDH9Q9ULB4 789 aa17.77■□□□□ 0.43
CLN3-252ENST00000636907 LRFN2Q9ULH4 789 aa17.77■□□□□ 0.43
CLN3-252ENST00000636907 MYBPHLA2RUH7 354 aa17.76■□□□□ 0.43
CLN3-252ENST00000636907 KRIT1O00522 736 aa17.76■□□□□ 0.43
CLN3-252ENST00000636907 PAPSS1O43252 624 aaPredicted RBP17.76■□□□□ 0.43
CLN3-252ENST00000636907 TCF4P15884 667 aa17.76■□□□□ 0.43
CLN3-252ENST00000636907 SSR1P43307 286 aaKnown RBP17.76■□□□□ 0.43
CLN3-252ENST00000636907 RPL34P49207 117 aaKnown RBP17.76■□□□□ 0.43
CLN3-252ENST00000636907 CDR1P51861 262 aa17.76■□□□□ 0.43
CLN3-252ENST00000636907 METTL23Q86XA0 190 aa17.76■□□□□ 0.43
CLN3-252ENST00000636907 ABI1Q8IZP0 508 aa17.76■□□□□ 0.43
CLN3-252ENST00000636907 PAWRQ96IZ0 340 aaKnown RBP17.76■□□□□ 0.43
CLN3-252ENST00000636907 CASD1Q96PB1 797 aa17.76■□□□□ 0.43
CLN3-252ENST00000636907 FAM193BQ96PV7 902 aaPredicted RBP17.76■□□□□ 0.43
CLN3-252ENST00000636907 KRT12Q99456 494 aa17.76■□□□□ 0.43
CLN3-252ENST00000636907 DUSP16Q9BY84 665 aa17.76■□□□□ 0.43
CLN3-252ENST00000636907 B3GNT5Q9BYG0 378 aa17.76■□□□□ 0.43
CLN3-252ENST00000636907 C11orf49Q9H6J7 331 aa17.76■□□□□ 0.43
CLN3-252ENST00000636907 DNAJB4Q9UDY4 337 aa17.76■□□□□ 0.43
CLN3-252ENST00000636907 DSEQ9UL01 958 aa17.76■□□□□ 0.43
CLN3-252ENST00000636907 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.76■□□□□ 0.43
CLN3-252ENST00000636907 XPO1O14980 1071 aaKnown RBP17.75■□□□□ 0.43
CLN3-252ENST00000636907 PCSK1P29120 753 aa17.75■□□□□ 0.43
CLN3-252ENST00000636907 PLA2G4AP47712 749 aa17.75■□□□□ 0.43
CLN3-252ENST00000636907 OR1G1P47890 313 aa17.75■□□□□ 0.43
CLN3-252ENST00000636907 MRPS25P82663 173 aaKnown RBP17.75■□□□□ 0.43
CLN3-252ENST00000636907 OLFML1Q6UWY5 402 aa17.75■□□□□ 0.43
CLN3-252ENST00000636907 SCUBE3Q8IX30 993 aa17.75■□□□□ 0.43
CLN3-252ENST00000636907 CRIPAKQ8N1N5 446 aa17.75■□□□□ 0.43
CLN3-252ENST00000636907 NAP1L3Q99457 506 aaPredicted RBP17.75■□□□□ 0.43
CLN3-252ENST00000636907 MED10Q9BTT4 135 aa17.75■□□□□ 0.43
CLN3-252ENST00000636907 TMEM39AQ9NV64 488 aa17.75■□□□□ 0.43
CLN3-252ENST00000636907 RAB21Q9UL25 225 aa17.75■□□□□ 0.43
CLN3-252ENST00000636907 NR2E1Q9Y466 385 aa17.75■□□□□ 0.43
CLN3-252ENST00000636907 TARSL2A2RTX5 802 aaKnown RBP17.74■□□□□ 0.43
CLN3-252ENST00000636907 TMEM189-UBE2V1I3L0A0 370 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 NPR3P17342 541 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 GJC1P36383 396 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 SNX16P57768 344 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 SLC6A3Q01959 620 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 PLCB3Q01970 1234 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 LRRC26Q2I0M4 334 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 CCDC70Q6NSX1 233 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 C8orf74Q6P047 294 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 ADAT2Q7Z6V5 191 aaKnown RBP17.74■□□□□ 0.43
CLN3-252ENST00000636907 KLHL7Q8IXQ5 586 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 MYCBPAPQ8TBZ2 947 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 HDAC7Q8WUI4 952 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 PCED1BQ96HM7 432 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 HSFY1Q96LI6 401 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 CYLDQ9NQC7 956 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 PRG3Q9Y2Y8 225 aaPredicted RBP17.74■□□□□ 0.43
CLN3-252ENST00000636907 TTC3P53804 2025 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 CCDC188H7C350 402 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 GRAP2O75791 330 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 BEST1O76090 585 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 CLTBP09497 229 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 LCP1P13796 627 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 TYMPP19971 482 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 CLCN6P51797 869 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 TAF5Q15542 800 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 CLUL1Q15846 466 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 TRNP1Q6NT89 227 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 CLEC20AQ6ZU45 233 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 PIGZQ86VD9 579 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 SLC13A5Q86YT5 568 aaPredicted RBP17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms