RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 TCEA3O75764 348 aa15.98■□□□□ 0.15
UPF1-204ENST00000596842 EDN1P05305 212 aa15.98■□□□□ 0.15
UPF1-204ENST00000596842 FAAP100Q0VG06 881 aa15.98■□□□□ 0.15
UPF1-204ENST00000596842 BSPRYQ5W0U4 402 aa15.98■□□□□ 0.15
UPF1-204ENST00000596842 TRIM72Q6ZMU5 477 aa15.98■□□□□ 0.15
UPF1-204ENST00000596842 SPATA18Q8TC71 538 aa15.98■□□□□ 0.15
UPF1-204ENST00000596842 DENND1AQ8TEH3 1009 aa15.98■□□□□ 0.15
UPF1-204ENST00000596842 DNAJC9Q8WXX5 260 aa15.98■□□□□ 0.15
UPF1-204ENST00000596842 CPT1BQ92523 772 aa15.98■□□□□ 0.15
UPF1-204ENST00000596842 FAM161BQ96MY7 647 aa15.98■□□□□ 0.15
UPF1-204ENST00000596842 TMEM120AQ9BXJ8 343 aa15.98■□□□□ 0.15
UPF1-204ENST00000596842 CAPN9O14815 690 aa15.98■□□□□ 0.15
UPF1-204ENST00000596842 ALOX15BO15296 676 aa15.98■□□□□ 0.15
UPF1-204ENST00000596842 ATP5HO75947 161 aa15.98■□□□□ 0.15
UPF1-204ENST00000596842 TMEM63AO94886 807 aa15.98■□□□□ 0.15
UPF1-204ENST00000596842 MYL2P10916 166 aa15.98■□□□□ 0.15
UPF1-204ENST00000596842 IL1R2P27930 398 aa15.98■□□□□ 0.15
UPF1-204ENST00000596842 SCNN1BP51168 640 aa15.98■□□□□ 0.15
UPF1-204ENST00000596842 C1QBPQ07021 282 aaKnown RBP15.98■□□□□ 0.15
UPF1-204ENST00000596842 KBTBD12Q3ZCT8 623 aa15.98■□□□□ 0.15
UPF1-204ENST00000596842 TMEM154Q6P9G4 183 aa15.98■□□□□ 0.15
UPF1-204ENST00000596842 CEP128Q6ZU80 1094 aa15.98■□□□□ 0.15
UPF1-204ENST00000596842 VSIG10LQ86VR7 867 aa15.98■□□□□ 0.15
UPF1-204ENST00000596842 TRIM56Q9BRZ2 755 aaKnown RBP15.98■□□□□ 0.15
UPF1-204ENST00000596842 ZNF302Q9NR11 478 aa15.98■□□□□ 0.15
UPF1-204ENST00000596842 BATF3Q9NR55 127 aa15.98■□□□□ 0.15
UPF1-204ENST00000596842 CHCHD3Q9NX63 227 aaKnown RBP15.98■□□□□ 0.15
UPF1-204ENST00000596842 PPARGC1AQ9UBK2 798 aaKnown RBP15.98■□□□□ 0.15
UPF1-204ENST00000596842 E2F8A0AVK6 867 aa15.97■□□□□ 0.15
UPF1-204ENST00000596842 ZC3H11AO75152 810 aaKnown RBP eCLIP15.97■□□□□ 0.15
UPF1-204ENST00000596842 CALB1P05937 261 aa15.97■□□□□ 0.15
UPF1-204ENST00000596842 GJB1P08034 283 aa15.97■□□□□ 0.15
UPF1-204ENST00000596842 FSTL1Q12841 308 aa15.97■□□□□ 0.15
UPF1-204ENST00000596842 ZNF699Q32M78 642 aa15.97■□□□□ 0.15
UPF1-204ENST00000596842 DENND1BQ6P3S1 775 aa15.97■□□□□ 0.15
UPF1-204ENST00000596842 MYLK4Q86YV6 388 aaPredicted RBP15.97■□□□□ 0.15
UPF1-204ENST00000596842 NSUN6Q8TEA1 469 aaKnown RBP15.97■□□□□ 0.15
UPF1-204ENST00000596842 NLRP4Q96MN2 994 aa15.97■□□□□ 0.15
UPF1-204ENST00000596842 SHCBP1LQ9BZQ2 653 aa15.97■□□□□ 0.15
UPF1-204ENST00000596842 RABGEF1Q9UJ41 708 aa15.97■□□□□ 0.15
UPF1-204ENST00000596842 ACTL7BQ9Y614 415 aa15.97■□□□□ 0.15
UPF1-204ENST00000596842 GREB1LQ9C091 1923 aaPredicted RBP15.97■□□□□ 0.15
UPF1-204ENST00000596842 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.97■□□□□ 0.15
UPF1-204ENST00000596842 TBXAS1P24557 533 aaPredicted RBP15.97■□□□□ 0.15
UPF1-204ENST00000596842 TPP2P29144 1249 aaPredicted RBP15.97■□□□□ 0.15
UPF1-204ENST00000596842 PAPOLAP51003 745 aaKnown RBP15.97■□□□□ 0.15
UPF1-204ENST00000596842 NIPA1Q7RTP0 329 aa15.97■□□□□ 0.15
UPF1-204ENST00000596842 PHF13Q86YI8 300 aaPredicted RBP15.97■□□□□ 0.15
UPF1-204ENST00000596842 SLC25A41Q8N5S1 370 aa15.97■□□□□ 0.15
UPF1-204ENST00000596842 PPP1R14CQ8TAE6 165 aa15.97■□□□□ 0.15
UPF1-204ENST00000596842 FAF2Q96CS3 445 aa15.97■□□□□ 0.15
UPF1-204ENST00000596842 RMI1Q9H9A7 625 aa15.97■□□□□ 0.15
UPF1-204ENST00000596842 GPATCH2LQ9NWQ4 482 aa15.97■□□□□ 0.15
UPF1-204ENST00000596842 ARHGAP28Q9P2N2 729 aa15.97■□□□□ 0.15
UPF1-204ENST00000596842 GJA3Q9Y6H8 435 aa15.97■□□□□ 0.15
UPF1-204ENST00000596842 MYH9P35579 1960 aaKnown RBP15.97■□□□□ 0.15
UPF1-204ENST00000596842 DPPA5A6NC42 116 aa15.97■□□□□ 0.15
UPF1-204ENST00000596842 KBTBD13C9JR72 458 aa15.97■□□□□ 0.15
UPF1-204ENST00000596842 H3BRJ5 948 aa15.97■□□□□ 0.15
UPF1-204ENST00000596842 VWA5AO00534 786 aa15.97■□□□□ 0.15
UPF1-204ENST00000596842 MCF2LO15068 1137 aa15.97■□□□□ 0.15
UPF1-204ENST00000596842 PMM2O15305 246 aa15.97■□□□□ 0.15
UPF1-204ENST00000596842 PTPN4P29074 926 aa15.97■□□□□ 0.15
UPF1-204ENST00000596842 CDKN2BP42772 138 aa15.97■□□□□ 0.15
UPF1-204ENST00000596842 ACVR2BQ13705 512 aa15.97■□□□□ 0.15
UPF1-204ENST00000596842 HADHQ16836 314 aaKnown RBP15.97■□□□□ 0.15
UPF1-204ENST00000596842 LRRC36Q1X8D7 754 aa15.97■□□□□ 0.15
UPF1-204ENST00000596842 SAMD7Q7Z3H4 446 aa15.97■□□□□ 0.15
UPF1-204ENST00000596842 ALYREFQ86V81 257 aaKnown RBP15.97■□□□□ 0.15
UPF1-204ENST00000596842 PPIL6Q8IXY8 311 aa15.97■□□□□ 0.15
UPF1-204ENST00000596842 INO80B-WBP1J3KQ70 363 aa15.96■□□□□ 0.15
UPF1-204ENST00000596842 TMPRSS15P98073 1019 aa15.96■□□□□ 0.15
UPF1-204ENST00000596842 XKR3Q5GH77 459 aa15.96■□□□□ 0.15
UPF1-204ENST00000596842 IGDCC3Q8IVU1 814 aa15.96■□□□□ 0.15
UPF1-204ENST00000596842 MAB21L3Q8N8X9 362 aa15.96■□□□□ 0.15
UPF1-204ENST00000596842 HIPK4Q8NE63 616 aa15.96■□□□□ 0.15
UPF1-204ENST00000596842 CFAP61Q8NHU2 1237 aa15.96■□□□□ 0.15
UPF1-204ENST00000596842 UBA3Q8TBC4 463 aa15.96■□□□□ 0.15
UPF1-204ENST00000596842 TTC1Q99614 292 aa15.96■□□□□ 0.15
UPF1-204ENST00000596842 MIPEPQ99797 713 aa15.96■□□□□ 0.15
UPF1-204ENST00000596842 NTPCRQ9BSD7 190 aaKnown RBP15.96■□□□□ 0.15
UPF1-204ENST00000596842 INO80BQ9C086 356 aaPredicted RBP15.96■□□□□ 0.15
UPF1-204ENST00000596842 PCDH9Q9HC56 1237 aa15.96■□□□□ 0.15
UPF1-204ENST00000596842 RAB6BQ9NRW1 208 aa15.96■□□□□ 0.15
UPF1-204ENST00000596842 PIH1D1Q9NWS0 290 aaKnown RBP15.96■□□□□ 0.15
UPF1-204ENST00000596842 SENP1Q9P0U3 644 aa15.96■□□□□ 0.15
UPF1-204ENST00000596842 ZFATQ9P243 1243 aa15.96■□□□□ 0.15
UPF1-204ENST00000596842 RGS20O76081 388 aa15.96■□□□□ 0.15
UPF1-204ENST00000596842 LUC7L3O95232 432 aaKnown RBP15.96■□□□□ 0.15
UPF1-204ENST00000596842 ABHD2P08910 425 aa15.96■□□□□ 0.15
UPF1-204ENST00000596842 SP2Q02086 613 aa15.96■□□□□ 0.15
UPF1-204ENST00000596842 CNTN2Q02246 1040 aa15.96■□□□□ 0.15
UPF1-204ENST00000596842 THOC5Q13769 683 aaKnown RBP15.96■□□□□ 0.15
UPF1-204ENST00000596842 TRIM50Q86XT4 487 aa15.96■□□□□ 0.15
UPF1-204ENST00000596842 NIM1KQ8IY84 436 aa15.96■□□□□ 0.15
UPF1-204ENST00000596842 CADM1Q9BY67 442 aaKnown RBP15.96■□□□□ 0.15
UPF1-204ENST00000596842 PRPF4O43172 522 aaKnown RBP eCLIP15.96■□□□□ 0.14
UPF1-204ENST00000596842 TYROBPO43914 113 aa15.96■□□□□ 0.14
UPF1-204ENST00000596842 RPS6KA3P51812 740 aa15.96■□□□□ 0.14
UPF1-204ENST00000596842 CDH6P55285 790 aa15.96■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms