RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 TCRBV5S2A0A599 114 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 TRIM43BA6NCK2 446 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 FADS2P1A8MWK0 482 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 B4DLN1 442 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 NFIBO00712 420 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 AKR1B10O60218 316 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 MPIG6BO95866 241 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 CELA2BP08218 269 aaPredicted RBP6.47□□□□□ -1.37
VPS53-219ENST00000576019 ITGA5P08648 1049 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 AKR1B1P15121 316 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 ADSLP30566 484 aaPredicted RBP6.47□□□□□ -1.37
VPS53-219ENST00000576019 ALDH1B1P30837 517 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 NPTX2P47972 431 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 SLC6A11P48066 632 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 SLC6A9P48067 706 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 GPR15P49685 360 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 PFKPQ01813 784 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 TLE1Q04724 770 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 AOC3Q16853 763 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 BORAQ6PGQ7 559 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 LRSAM1Q6UWE0 723 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 LYPD4Q6UWN0 246 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 CATSPERGQ6ZRH7 1159 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 BEND4Q6ZU67 534 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 UNC13DQ70J99 1090 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 ZNF765Q7L2R6 523 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 HERC6Q8IVU3 1022 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 GLB1L2Q8IW92 636 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 TRIM48Q8IWZ4 208 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 SHISA5Q8N114 240 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 NKAIN3Q8N8D7 197 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 GLIS1Q8NBF1 620 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 CYP2W1Q8TAV3 490 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 CCHCR1Q8TD31 782 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 AFG1LQ8WV93 481 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 ZUFSPQ96AP4 578 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 TRIM43Q96BQ3 446 aaPredicted RBP6.47□□□□□ -1.37
VPS53-219ENST00000576019 NMD3Q96D46 503 aaKnown RBP6.47□□□□□ -1.37
VPS53-219ENST00000576019 HVCN1Q96D96 273 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 ZMAT2Q96NC0 199 aaKnown RBP6.47□□□□□ -1.37
VPS53-219ENST00000576019 KATNAL1Q9BW62 490 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 AGXT2Q9BYV1 514 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 TRIM54Q9BYV2 358 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 PITHD1Q9GZP4 211 aaPredicted RBP6.47□□□□□ -1.37
VPS53-219ENST00000576019 EPB41L4AQ9HCS5 686 aaPredicted RBP6.47□□□□□ -1.37
VPS53-219ENST00000576019 NSMCE4AQ9NXX6 385 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 IMPACTQ9P2X3 320 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 SRRDQ9UH36 339 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 FRMD4BQ9Y2L6 1034 aa6.47□□□□□ -1.37
VPS53-219ENST00000576019 DDX60LQ5H9U9 1706 aaKnown RBP6.47□□□□□ -1.37
VPS53-219ENST00000576019 COL1A1P02452 1464 aaPredicted RBP6.47□□□□□ -1.37
VPS53-219ENST00000576019 LTBP2Q14767 1821 aa6.46□□□□□ -1.37
VPS53-219ENST00000576019 CHD9Q3L8U1 2897 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 VPS13AQ96RL7 3174 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 A0A1W2PQ27 194 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 A0A1W2PQ64 194 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 A0A1W2PQC6 194 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 A0A1W2PQD8 194 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 PROB1E7EW31 1015 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 DAPK3O43293 454 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 USO1O60763 962 aaKnown RBP6.46□□□□□ -1.38
VPS53-219ENST00000576019 RAD17O75943 681 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 RTN3O95197 1032 aaPredicted RBP6.46□□□□□ -1.38
VPS53-219ENST00000576019 MSL3P1P0C860 447 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 ZSCAN22P10073 491 aaPredicted RBP6.46□□□□□ -1.38
VPS53-219ENST00000576019 RARBP10826 455 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 ALADP13716 330 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 CALRP27797 417 aaKnown RBP6.46□□□□□ -1.38
VPS53-219ENST00000576019 NOS3P29474 1203 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 THBS2P35442 1172 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 STAT5AP42229 794 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 CARSP49589 748 aaKnown RBP6.46□□□□□ -1.38
VPS53-219ENST00000576019 MAN2A2P49641 1150 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 PRKAA2P54646 552 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 SOX8P57073 446 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 NRG1Q02297 640 aaPredicted RBP6.46□□□□□ -1.38
VPS53-219ENST00000576019 DBPQ10586 325 aaPredicted RBP6.46□□□□□ -1.38
VPS53-219ENST00000576019 SLC12A1Q13621 1099 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 NCAPD2Q15021 1401 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 CYP27C1Q4G0S4 372 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 FLYWCH1Q4VC44 716 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 C9orf50Q5SZB4 431 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 CFAP58Q5T655 872 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 KLHL17Q6TDP4 642 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 RNF44Q7L0R7 432 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 ASCL5Q7RTU5 278 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 THAP5Q7Z6K1 395 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 SNX32Q86XE0 403 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 SIAH1Q8IUQ4 282 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 ARRDC4Q8NCT1 418 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 GPR156Q8NFN8 814 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 OR6B3Q8NGW1 331 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 TDRD7Q8NHU6 1098 aaKnown RBP6.46□□□□□ -1.38
VPS53-219ENST00000576019 IFI44Q8TCB0 444 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 OTUD7AQ8TE49 926 aaPredicted RBP6.46□□□□□ -1.38
VPS53-219ENST00000576019 HOXB13Q92826 284 aaPredicted RBP6.46□□□□□ -1.38
VPS53-219ENST00000576019 ZKSCAN4Q969J2 545 aaPredicted RBP6.46□□□□□ -1.38
VPS53-219ENST00000576019 MAP6Q96JE9 813 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 HIST1H2AHQ96KK5 128 aa6.46□□□□□ -1.38
VPS53-219ENST00000576019 COG8Q96MW5 612 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms