RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 FAM35AQ86V20 835 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 VSTM4Q8IW00 320 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 SCN4BQ8IWT1 228 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 TCEAL8Q8IYN2 117 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 C12orf76Q8N812 135 aaPredicted RBP9.09□□□□□ -0.95
NUP88-211ENST00000575976 FEZF2Q8TBJ5 459 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 CPLX3Q8WVH0 158 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 FUBP3Q96I24 572 aaKnown RBP eCLIP9.09□□□□□ -0.95
NUP88-211ENST00000575976 SEPT5Q99719 369 aaPredicted RBP9.09□□□□□ -0.95
NUP88-211ENST00000575976 APOL5Q9BWW9 433 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 EDEM3Q9BZQ6 932 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 ABCB6Q9NP58 842 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 TMEM30AQ9NV96 361 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 HSFX1Q9UBD0 423 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 DPP7Q9UHL4 492 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 KIAA1257Q9ULG3 409 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 MAFFQ9ULX9 164 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 YIPF1Q9Y548 306 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 INSL5Q9Y5Q6 135 aa9.09□□□□□ -0.95
NUP88-211ENST00000575976 PRRC2BQ5JSZ5 2229 aaKnown RBP9.09□□□□□ -0.95
NUP88-211ENST00000575976 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.08□□□□□ -0.96
NUP88-211ENST00000575976 CCDC195A0A1B0GUA6 201 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 GOLGA6L3A6NEY3 463 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 SPDYE4A6NLX3 237 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 O00370 1275 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 CCL16O15467 120 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 THAP12O43422 761 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 AP1G2O75843 785 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 BEST1O76090 585 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 MICAL2O94851 1124 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 LRG1P02750 347 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 GYPCP04921 128 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 SRGAP2BP0DMP2 458 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 ATF6P18850 670 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 GNA15P30679 374 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 GRIK1P39086 918 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 MAGEA11P43364 429 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 ALDH1A3P47895 512 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 PTK2Q05397 1052 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 CNGA2Q16280 664 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 GOLGA7BQ2TAP0 167 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 RARS2Q5T160 578 aaKnown RBP9.08□□□□□ -0.96
NUP88-211ENST00000575976 SDHAF4Q5VUM1 108 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 SPECC1LQ69YQ0 1117 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 ELMSAN1Q6PJG2 1045 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 VSTM1Q6UX27 236 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 TMC5Q6UXY8 1006 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 RTL10Q7L3V2 364 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 TMC6Q7Z403 805 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 SLC47A2Q86VL8 602 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 TTC30AQ86WT1 665 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 STKLD1Q8NE28 680 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 ZMIZ2Q8NF64 920 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 UBA3Q8TBC4 463 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 GIPC2Q8TF65 315 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 ZNF606Q8WXB4 792 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 MRFAP1L1Q96HT8 127 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 KCNK16Q96T55 309 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 SMOQ99835 787 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 SFXN1Q9H9B4 322 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 GRPEL1Q9HAV7 217 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 KRT82Q9NSB4 513 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 DZANK1Q9NVP4 752 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 ZDHHC7Q9NXF8 308 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 TSPAN16Q9UKR8 245 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 CAPN11Q9UMQ6 739 aa9.08□□□□□ -0.96
NUP88-211ENST00000575976 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.08□□□□□ -0.96
NUP88-211ENST00000575976 ATP8B3O60423 1300 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 A0A1W2PQJ5 194 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 LRRC53A6NM62 1247 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 F8VP50 259 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 ADCY5O95622 1261 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 CFHP08603 1231 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 HNRNPA1P09651 372 aaKnown RBP eCLIP9.07□□□□□ -0.96
NUP88-211ENST00000575976 FAM200BP0CF97 657 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 CYP11B1P15538 503 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 HOXB8P17481 243 aaPredicted RBP9.07□□□□□ -0.96
NUP88-211ENST00000575976 HOXA9P31269 272 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 CASP14P31944 242 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 EPHB3P54753 998 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 MAP3K7CLP57077 242 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 BPIFB4P59827 614 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 RPL10AP62906 217 aaKnown RBP9.07□□□□□ -0.96
NUP88-211ENST00000575976 ZBED6P86452 979 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 ARID5AQ03989 594 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 STILQ15468 1287 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 CLUL1Q15846 466 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 PKDCCQ504Y2 493 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 DENND1BQ6P3S1 775 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 LCLAT1Q6UWP7 414 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 CLEC20AQ6ZU45 233 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 IRF2BP2Q7Z5L9 587 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 NOP9Q86U38 636 aaKnown RBP9.07□□□□□ -0.96
NUP88-211ENST00000575976 ANKRD52Q8NB46 1076 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 GPR152Q8TDT2 470 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 DDX1Q92499 740 aaKnown RBP9.07□□□□□ -0.96
NUP88-211ENST00000575976 ZNF707Q96C28 371 aaPredicted RBP9.07□□□□□ -0.96
NUP88-211ENST00000575976 IQCDQ96DY2 449 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 SMARCD1Q96GM5 515 aa9.07□□□□□ -0.96
NUP88-211ENST00000575976 MSLNLQ96KJ4 702 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms