RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 CTTNQ14247 550 aaKnown RBP17.62■□□□□ 0.41
VPS53-218ENST00000575207 MGAT5BQ3V5L5 792 aa17.62■□□□□ 0.41
VPS53-218ENST00000575207 PPP4R3AQ6IN85 833 aa17.62■□□□□ 0.41
VPS53-218ENST00000575207 KCNV2Q8TDN2 545 aa17.62■□□□□ 0.41
VPS53-218ENST00000575207 GIPC2Q8TF65 315 aa17.62■□□□□ 0.41
VPS53-218ENST00000575207 DYDC2Q96IM9 177 aa17.62■□□□□ 0.41
VPS53-218ENST00000575207 CD248Q9HCU0 757 aa17.62■□□□□ 0.41
VPS53-218ENST00000575207 FTSJ1Q9UET6 329 aa17.62■□□□□ 0.41
VPS53-218ENST00000575207 SSUH2Q9Y2M2 353 aa17.62■□□□□ 0.41
VPS53-218ENST00000575207 LRBAP50851 2863 aa17.62■□□□□ 0.41
VPS53-218ENST00000575207 MYLKQ15746 1914 aa17.62■□□□□ 0.41
VPS53-218ENST00000575207 BCAT2O15382 392 aaPredicted RBP17.61■□□□□ 0.41
VPS53-218ENST00000575207 ZBTB43O43298 467 aa17.61■□□□□ 0.41
VPS53-218ENST00000575207 CDC27P30260 824 aa17.61■□□□□ 0.41
VPS53-218ENST00000575207 SLC6A11P48066 632 aa17.61■□□□□ 0.41
VPS53-218ENST00000575207 SF3A1Q15459 793 aaKnown RBP17.61■□□□□ 0.41
VPS53-218ENST00000575207 HES3Q5TGS1 186 aa17.61■□□□□ 0.41
VPS53-218ENST00000575207 FBXL19Q6PCT2 694 aa17.61■□□□□ 0.41
VPS53-218ENST00000575207 USP37Q86T82 979 aa17.61■□□□□ 0.41
VPS53-218ENST00000575207 CACTIN-AS1Q8N1I8 211 aa17.61■□□□□ 0.41
VPS53-218ENST00000575207 CEP120Q8N960 986 aa17.61■□□□□ 0.41
VPS53-218ENST00000575207 NAF1Q96HR8 494 aaKnown RBP17.61■□□□□ 0.41
VPS53-218ENST00000575207 FAM20AQ96MK3 541 aa17.61■□□□□ 0.41
VPS53-218ENST00000575207 C22orf23Q9BZE7 217 aa17.61■□□□□ 0.41
VPS53-218ENST00000575207 STARD5Q9NSY2 213 aa17.61■□□□□ 0.41
VPS53-218ENST00000575207 ANKEF1Q9NU02 776 aa17.61■□□□□ 0.41
VPS53-218ENST00000575207 MAN2B2Q9Y2E5 1009 aa17.61■□□□□ 0.41
VPS53-218ENST00000575207 OBSL1O75147 1896 aa17.61■□□□□ 0.41
VPS53-218ENST00000575207 ANK1P16157 1881 aa17.61■□□□□ 0.41
VPS53-218ENST00000575207 NBASA2RRP1 2371 aa17.6■□□□□ 0.41
VPS53-218ENST00000575207 A0A1W2PQF6 199 aa17.6■□□□□ 0.41
VPS53-218ENST00000575207 RFPL3O75679 317 aa17.6■□□□□ 0.41
VPS53-218ENST00000575207 LYPLA2O95372 231 aa17.6■□□□□ 0.41
VPS53-218ENST00000575207 NDUFV2P19404 249 aa17.6■□□□□ 0.41
VPS53-218ENST00000575207 GRIA2P42262 883 aa17.6■□□□□ 0.41
VPS53-218ENST00000575207 AARSP49588 968 aaKnown RBP eCLIP17.6■□□□□ 0.41
VPS53-218ENST00000575207 MAPK8IP2Q13387 824 aaPredicted RBP17.6■□□□□ 0.41
VPS53-218ENST00000575207 TRMT11Q7Z4G4 463 aaKnown RBP17.6■□□□□ 0.41
VPS53-218ENST00000575207 SLC22A12Q96S37 553 aa17.6■□□□□ 0.41
VPS53-218ENST00000575207 CCDC94Q9BW85 323 aaPredicted RBP17.6■□□□□ 0.41
VPS53-218ENST00000575207 KCNMB3Q9NPA1 279 aa17.6■□□□□ 0.41
VPS53-218ENST00000575207 GPRC5CQ9NQ84 441 aa17.6■□□□□ 0.41
VPS53-218ENST00000575207 CNTN3Q9P232 1028 aa17.6■□□□□ 0.41
VPS53-218ENST00000575207 DDX25Q9UHL0 483 aaKnown RBP17.6■□□□□ 0.41
VPS53-218ENST00000575207 BRPF3Q9ULD4 1205 aa17.6■□□□□ 0.41
VPS53-218ENST00000575207 ICE1Q9Y2F5 2266 aa17.59■□□□□ 0.41
VPS53-218ENST00000575207 MEI4A8MW99 385 aa17.59■□□□□ 0.41
VPS53-218ENST00000575207 SLITRK3O94933 977 aa17.59■□□□□ 0.41
VPS53-218ENST00000575207 USP17L7P0C7H9 530 aa17.59■□□□□ 0.41
VPS53-218ENST00000575207 RARRES1P49788 294 aa17.59■□□□□ 0.41
VPS53-218ENST00000575207 ATF7IP2Q5U623 682 aa17.59■□□□□ 0.41
VPS53-218ENST00000575207 KIAA1614Q5VZ46 1190 aa17.59■□□□□ 0.41
VPS53-218ENST00000575207 OVOS1Q6IE37 1185 aa17.59■□□□□ 0.41
VPS53-218ENST00000575207 ARMCX5Q6P1M9 558 aa17.59■□□□□ 0.41
VPS53-218ENST00000575207 APBB1IPQ7Z5R6 666 aaPredicted RBP17.59■□□□□ 0.41
VPS53-218ENST00000575207 TPH2Q8IWU9 490 aa17.59■□□□□ 0.41
VPS53-218ENST00000575207 EXD3Q8N9H8 876 aa17.59■□□□□ 0.41
VPS53-218ENST00000575207 TTC16Q8NEE8 873 aa17.59■□□□□ 0.41
VPS53-218ENST00000575207 CADM4Q8NFZ8 388 aa17.59■□□□□ 0.41
VPS53-218ENST00000575207 C1orf216Q8TAB5 229 aa17.59■□□□□ 0.41
VPS53-218ENST00000575207 SH3RF2Q8TEC5 729 aa17.59■□□□□ 0.41
VPS53-218ENST00000575207 LIN37Q96GY3 246 aaPredicted RBP17.59■□□□□ 0.41
VPS53-218ENST00000575207 ZNF578Q96N58 590 aaPredicted RBP17.59■□□□□ 0.41
VPS53-218ENST00000575207 CYP2S1Q96SQ9 504 aa17.59■□□□□ 0.41
VPS53-218ENST00000575207 MIR1-1HGQ9H1L0 117 aa17.59■□□□□ 0.41
VPS53-218ENST00000575207 CD93Q9NPY3 652 aa17.59■□□□□ 0.41
VPS53-218ENST00000575207 ZFHX3Q15911 3703 aa17.59■□□□□ 0.41
VPS53-218ENST00000575207 CENPEQ02224 2701 aa17.58■□□□□ 0.41
VPS53-218ENST00000575207 A0A1B0GVT2 93 aa17.58■□□□□ 0.4
VPS53-218ENST00000575207 K7ENP7 123 aa17.58■□□□□ 0.4
VPS53-218ENST00000575207 ZBTB24O43167 697 aaPredicted RBP17.58■□□□□ 0.4
VPS53-218ENST00000575207 SLC37A4O43826 429 aa17.58■□□□□ 0.4
VPS53-218ENST00000575207 CYP17A1P05093 508 aa17.58■□□□□ 0.4
VPS53-218ENST00000575207 HOXB2P14652 356 aa17.58■□□□□ 0.4
VPS53-218ENST00000575207 TYMPP19971 482 aa17.58■□□□□ 0.4
VPS53-218ENST00000575207 HSPA4P34932 840 aa17.58■□□□□ 0.4
VPS53-218ENST00000575207 DMP1Q13316 513 aaPredicted RBP17.58■□□□□ 0.4
VPS53-218ENST00000575207 NT5DC1Q5TFE4 455 aa17.58■□□□□ 0.4
VPS53-218ENST00000575207 INO80CQ6PI98 192 aaPredicted RBP17.58■□□□□ 0.4
VPS53-218ENST00000575207 PADI6Q6TGC4 694 aa17.58■□□□□ 0.4
VPS53-218ENST00000575207 DHX40Q8IX18 779 aaKnown RBP17.58■□□□□ 0.4
VPS53-218ENST00000575207 CCDC148Q8NFR7 591 aa17.58■□□□□ 0.4
VPS53-218ENST00000575207 RUFY2Q8WXA3 655 aa17.58■□□□□ 0.4
VPS53-218ENST00000575207 ARHGEF4Q9NR80 690 aa17.58■□□□□ 0.4
VPS53-218ENST00000575207 GOLGA8AA7E2F4 631 aa17.57■□□□□ 0.4
VPS53-218ENST00000575207 GOLGA8BA8MQT2 603 aa17.57■□□□□ 0.4
VPS53-218ENST00000575207 PAPSS1O43252 624 aaPredicted RBP17.57■□□□□ 0.4
VPS53-218ENST00000575207 TADA3O75528 432 aa17.57■□□□□ 0.4
VPS53-218ENST00000575207 POU3F2P20265 443 aaPredicted RBP17.57■□□□□ 0.4
VPS53-218ENST00000575207 CD6P30203 668 aa17.57■□□□□ 0.4
VPS53-218ENST00000575207 NFKB2Q00653 900 aa17.57■□□□□ 0.4
VPS53-218ENST00000575207 KIF19Q2TAC6 998 aa17.57■□□□□ 0.4
VPS53-218ENST00000575207 INAVAQ3KP66 663 aa17.57■□□□□ 0.4
VPS53-218ENST00000575207 C12orf40Q86WS4 652 aa17.57■□□□□ 0.4
VPS53-218ENST00000575207 ADGRG2Q8IZP9 1017 aa17.57■□□□□ 0.4
VPS53-218ENST00000575207 PHTF2Q8N3S3 785 aa17.57■□□□□ 0.4
VPS53-218ENST00000575207 DPH1Q9BZG8 443 aa17.57■□□□□ 0.4
VPS53-218ENST00000575207 WSB2Q9NYS7 404 aaPredicted RBP17.57■□□□□ 0.4
VPS53-218ENST00000575207 RBM8AQ9Y5S9 174 aaKnown RBP17.57■□□□□ 0.4
VPS53-218ENST00000575207 CACNA1DQ01668 2161 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms