RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 MYBPHLA2RUH7 354 aa14.3□□□□□ -0.12
CLK3-218ENST00000566926 A8MXQ7 604 aa14.3□□□□□ -0.12
CLK3-218ENST00000566926 ECI2O75521 394 aa14.3□□□□□ -0.12
CLK3-218ENST00000566926 SOAT2O75908 522 aa14.3□□□□□ -0.12
CLK3-218ENST00000566926 HLA-DRAP01903 254 aa14.3□□□□□ -0.12
CLK3-218ENST00000566926 ATF6P18850 670 aa14.3□□□□□ -0.12
CLK3-218ENST00000566926 COL9A1P20849 921 aa14.3□□□□□ -0.12
CLK3-218ENST00000566926 LMO2P25791 158 aa14.3□□□□□ -0.12
CLK3-218ENST00000566926 CCR2P41597 374 aa14.3□□□□□ -0.12
CLK3-218ENST00000566926 GCLMP48507 274 aa14.3□□□□□ -0.12
CLK3-218ENST00000566926 TRIM14Q14142 442 aa14.3□□□□□ -0.12
CLK3-218ENST00000566926 VWA3BQ502W6 1294 aa14.3□□□□□ -0.12
CLK3-218ENST00000566926 HSP90AA4PQ58FG1 418 aa14.3□□□□□ -0.12
CLK3-218ENST00000566926 SPECC1LQ69YQ0 1117 aa14.3□□□□□ -0.12
CLK3-218ENST00000566926 KRT39Q6A163 491 aa14.3□□□□□ -0.12
CLK3-218ENST00000566926 PARM1Q6UWI2 310 aa14.3□□□□□ -0.12
CLK3-218ENST00000566926 VSTM1Q6UX27 236 aa14.3□□□□□ -0.12
CLK3-218ENST00000566926 TMC8Q8IU68 726 aa14.3□□□□□ -0.12
CLK3-218ENST00000566926 CREBRFQ8IUR6 639 aa14.3□□□□□ -0.12
CLK3-218ENST00000566926 FBXL6Q8N531 539 aa14.3□□□□□ -0.12
CLK3-218ENST00000566926 MYCBPAPQ8TBZ2 947 aa14.3□□□□□ -0.12
CLK3-218ENST00000566926 FGF14Q92915 247 aa14.3□□□□□ -0.12
CLK3-218ENST00000566926 E2F7Q96AV8 911 aa14.3□□□□□ -0.12
CLK3-218ENST00000566926 ELSPBP1Q96BH3 223 aa14.3□□□□□ -0.12
CLK3-218ENST00000566926 TNIP3Q96KP6 325 aa14.3□□□□□ -0.12
CLK3-218ENST00000566926 NAP1L5Q96NT1 182 aaPredicted RBP14.3□□□□□ -0.12
CLK3-218ENST00000566926 MRPL45Q9BRJ2 306 aaKnown RBP14.3□□□□□ -0.12
CLK3-218ENST00000566926 LRRC3Q9BY71 257 aa14.3□□□□□ -0.12
CLK3-218ENST00000566926 MFSD1Q9H3U5 465 aa14.3□□□□□ -0.12
CLK3-218ENST00000566926 SLITRK6Q9H5Y7 841 aa14.3□□□□□ -0.12
CLK3-218ENST00000566926 ZFP14Q9HCL3 533 aa14.3□□□□□ -0.12
CLK3-218ENST00000566926 UXTQ9UBK9 157 aaPredicted RBP14.3□□□□□ -0.12
CLK3-218ENST00000566926 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.3□□□□□ -0.12
CLK3-218ENST00000566926 ANAPC1Q9H1A4 1944 aa14.3□□□□□ -0.12
CLK3-218ENST00000566926 A0A1W2PRU2 124 aa14.29□□□□□ -0.12
CLK3-218ENST00000566926 ASS1P00966 412 aaKnown RBP14.29□□□□□ -0.12
CLK3-218ENST00000566926 TPM1P09493 284 aa14.29□□□□□ -0.12
CLK3-218ENST00000566926 TRIM49P0CI25 452 aa14.29□□□□□ -0.12
CLK3-218ENST00000566926 TRIM49CP0CI26 452 aa14.29□□□□□ -0.12
CLK3-218ENST00000566926 PTPN1P18031 435 aaKnown RBP14.29□□□□□ -0.12
CLK3-218ENST00000566926 CYP2F1P24903 491 aa14.29□□□□□ -0.12
CLK3-218ENST00000566926 GABRR2P28476 465 aa14.29□□□□□ -0.12
CLK3-218ENST00000566926 PFKPQ01813 784 aa14.29□□□□□ -0.12
CLK3-218ENST00000566926 CYP27A1Q02318 531 aa14.29□□□□□ -0.12
CLK3-218ENST00000566926 UBXN1Q04323 297 aa14.29□□□□□ -0.12
CLK3-218ENST00000566926 TEAD2Q15562 447 aa14.29□□□□□ -0.12
CLK3-218ENST00000566926 C1orf220Q5T0J3 134 aa14.29□□□□□ -0.12
CLK3-218ENST00000566926 TCERG1LQ5VWI1 586 aa14.29□□□□□ -0.12
CLK3-218ENST00000566926 TRIM59Q8IWR1 403 aa14.29□□□□□ -0.12
CLK3-218ENST00000566926 SHKBP1Q8TBC3 707 aa14.29□□□□□ -0.12
CLK3-218ENST00000566926 GIPC2Q8TF65 315 aa14.29□□□□□ -0.12
CLK3-218ENST00000566926 FAXDC2Q96IV6 333 aa14.29□□□□□ -0.12
CLK3-218ENST00000566926 LPIN3Q9BQK8 851 aa14.29□□□□□ -0.12
CLK3-218ENST00000566926 KCNH6Q9H252 994 aa14.29□□□□□ -0.12
CLK3-218ENST00000566926 ATXN3LQ9H3M9 355 aa14.29□□□□□ -0.12
CLK3-218ENST00000566926 MMRN2Q9H8L6 949 aa14.29□□□□□ -0.12
CLK3-218ENST00000566926 SLC2A4RGQ9NR83 387 aa14.29□□□□□ -0.12
CLK3-218ENST00000566926 TAB2Q9NYJ8 693 aa14.29□□□□□ -0.12
CLK3-218ENST00000566926 EHD2Q9NZN4 543 aa14.29□□□□□ -0.12
CLK3-218ENST00000566926 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.29□□□□□ -0.12
CLK3-218ENST00000566926 ATP8B3O60423 1300 aa14.29□□□□□ -0.12
CLK3-218ENST00000566926 SOBPA7XYQ1 873 aa14.28□□□□□ -0.12
CLK3-218ENST00000566926 TRIM66O15016 1216 aa14.28□□□□□ -0.12
CLK3-218ENST00000566926 NRDCO43847 1150 aa14.28□□□□□ -0.12
CLK3-218ENST00000566926 ATP2C2O75185 946 aa14.28□□□□□ -0.12
CLK3-218ENST00000566926 MOSPD3O75425 235 aa14.28□□□□□ -0.12
CLK3-218ENST00000566926 ANXA13P27216 316 aa14.28□□□□□ -0.12
CLK3-218ENST00000566926 MXI1P50539 228 aa14.28□□□□□ -0.12
CLK3-218ENST00000566926 PSMC1P62191 440 aaKnown RBP14.28□□□□□ -0.12
CLK3-218ENST00000566926 PPP3CAQ08209 521 aa14.28□□□□□ -0.12
CLK3-218ENST00000566926 DDR2Q16832 855 aa14.28□□□□□ -0.12
CLK3-218ENST00000566926 MDH1BQ5I0G3 518 aa14.28□□□□□ -0.12
CLK3-218ENST00000566926 GAREM2Q75VX8 874 aa14.28□□□□□ -0.12
CLK3-218ENST00000566926 UNC93AQ86WB7 457 aa14.28□□□□□ -0.12
CLK3-218ENST00000566926 SCN4BQ8IWT1 228 aa14.28□□□□□ -0.12
CLK3-218ENST00000566926 B3GALNT2Q8NCR0 500 aa14.28□□□□□ -0.12
CLK3-218ENST00000566926 SMARCD2Q92925 531 aa14.28□□□□□ -0.12
CLK3-218ENST00000566926 MYLPFQ96A32 169 aa14.28□□□□□ -0.12
CLK3-218ENST00000566926 EEF2KMTQ96G04 330 aa14.28□□□□□ -0.12
CLK3-218ENST00000566926 SPATA17Q96L03 361 aa14.28□□□□□ -0.12
CLK3-218ENST00000566926 ASB16Q96NS5 453 aa14.28□□□□□ -0.12
CLK3-218ENST00000566926 NUP58Q9BVL2 599 aa14.28□□□□□ -0.12
CLK3-218ENST00000566926 VPS16Q9H269 839 aa14.28□□□□□ -0.12
CLK3-218ENST00000566926 NDST4Q9H3R1 872 aa14.28□□□□□ -0.12
CLK3-218ENST00000566926 SMOC2Q9H3U7 446 aa14.28□□□□□ -0.12
CLK3-218ENST00000566926 SMYD3Q9H7B4 428 aa14.28□□□□□ -0.12
CLK3-218ENST00000566926 CYP3A43Q9HB55 503 aa14.28□□□□□ -0.12
CLK3-218ENST00000566926 TRPV4Q9HBA0 871 aa14.28□□□□□ -0.12
CLK3-218ENST00000566926 CRTAC1Q9NQ79 661 aa14.28□□□□□ -0.12
CLK3-218ENST00000566926 ARIH1Q9Y4X5 557 aaPredicted RBP14.28□□□□□ -0.12
CLK3-218ENST00000566926 MIA3Q5JRA6 1907 aa14.27□□□□□ -0.12
CLK3-218ENST00000566926 PES1O00541 588 aaKnown RBP14.27□□□□□ -0.13
CLK3-218ENST00000566926 HCRTO43612 131 aa14.27□□□□□ -0.13
CLK3-218ENST00000566926 NARSO43776 548 aaKnown RBP14.27□□□□□ -0.13
CLK3-218ENST00000566926 CFHP08603 1231 aa14.27□□□□□ -0.13
CLK3-218ENST00000566926 GJA1P17302 382 aa14.27□□□□□ -0.13
CLK3-218ENST00000566926 RFX1P22670 979 aa14.27□□□□□ -0.13
CLK3-218ENST00000566926 DDX6P26196 483 aaKnown RBP eCLIP14.27□□□□□ -0.13
CLK3-218ENST00000566926 GRIK1P39086 918 aa14.27□□□□□ -0.13
CLK3-218ENST00000566926 PBX1P40424 430 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms