RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 TRPS1Q9UHF7 1281 aa5.57□□□□□ -1.52
VPS35-205ENST00000563984 REXO2Q9Y3B8 237 aaKnown RBP5.57□□□□□ -1.52
VPS35-205ENST00000563984 PCDHGB3Q9Y5G1 929 aa5.57□□□□□ -1.52
VPS35-205ENST00000563984 CC2D2AQ9P2K1 1620 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 NACADO15069 1562 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 KIF2AO00139 706 aaPredicted RBP5.56□□□□□ -1.52
VPS35-205ENST00000563984 ITGA10O75578 1167 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 YEATS4O95619 227 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 CYP1A2P05177 515 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 ADH4P08319 380 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 GZMAP12544 262 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 PECAM1P16284 738 aaPredicted RBP5.56□□□□□ -1.52
VPS35-205ENST00000563984 ATP5DP30049 168 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 PTGS2P35354 604 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 EPS15P42566 896 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 CDKN1CP49918 316 aaPredicted RBP5.56□□□□□ -1.52
VPS35-205ENST00000563984 PEX5P50542 639 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 HDAC4P56524 1084 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 SCAND1P57086 179 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 SLC25A3Q00325 362 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 CDK17Q00537 523 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 ITIH3Q06033 890 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 GRIK3Q13003 919 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 NAA16Q6N069 864 aaPredicted RBP5.56□□□□□ -1.52
VPS35-205ENST00000563984 GBP6Q6ZN66 633 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 RAPH1Q70E73 1250 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 KCNK18Q7Z418 384 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 LILRA3Q8N6C8 439 aaPredicted RBP5.56□□□□□ -1.52
VPS35-205ENST00000563984 GPR156Q8NFN8 814 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 TRIM58Q8NG06 486 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 TGFBRAP1Q8WUH2 860 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 ZNF480Q8WV37 535 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 TCP11Q8WWU5 503 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 CTNNBL1Q8WYA6 563 aaPredicted RBP5.56□□□□□ -1.52
VPS35-205ENST00000563984 HPS3Q969F9 1004 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 RBM17Q96I25 401 aaKnown RBP5.56□□□□□ -1.52
VPS35-205ENST00000563984 HERC2P3Q9BVR0 1158 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 SLC2A4RGQ9NR83 387 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 C14orf119Q9NWQ9 140 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 HDAC6Q9UBN7 1215 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 PRELID1Q9Y255 219 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 ANGPTL3Q9Y5C1 460 aa5.56□□□□□ -1.52
VPS35-205ENST00000563984 GRXCR1A8MXD5 290 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 PRR5-ARHGAP8B1AHC4 643 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 B5MCH6 92 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 RTCAO00442 366 aaKnown RBP5.55□□□□□ -1.52
VPS35-205ENST00000563984 TRIM24O15164 1050 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 PIP5K1CO60331 668 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 NMT2O60551 498 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 RPS6KA4O75676 772 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 AGR2O95994 175 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 S100A6P06703 90 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 CENPAP49450 140 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 LIMK1P53667 647 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 TBX2Q13207 712 aaPredicted RBP5.55□□□□□ -1.52
VPS35-205ENST00000563984 PLCB4Q15147 1175 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 PPP1R7Q15435 360 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 ADRM1Q16186 407 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 PROSER3Q2NL68 480 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 CAPRIN2Q6IMN6 1127 aaKnown RBP5.55□□□□□ -1.52
VPS35-205ENST00000563984 DRICH1Q6PGQ1 229 aaPredicted RBP5.55□□□□□ -1.52
VPS35-205ENST00000563984 LVRNQ6Q4G3 990 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 CRTC1Q6UUV9 634 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 LHFPL2Q6ZUX7 228 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 MICALCLQ6ZW33 695 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 INTS8Q75QN2 995 aaKnown RBP5.55□□□□□ -1.52
VPS35-205ENST00000563984 GPRIN1Q7Z2K8 1008 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 CCDC186Q7Z3E2 898 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 NLRP14Q86W24 1093 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 CARNMT1Q8N4J0 409 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 TTC39CQ8N584 583 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 LINC00469Q8N7U9 141 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 TSPEARQ8WU66 669 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 SLC25A43Q8WUT9 341 aaPredicted RBP5.55□□□□□ -1.52
VPS35-205ENST00000563984 RIN2Q8WYP3 895 aaPredicted RBP5.55□□□□□ -1.52
VPS35-205ENST00000563984 HAS1Q92839 578 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 CLIP3Q96DZ5 547 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 FAXDC2Q96IV6 333 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 ZMAT2Q96NC0 199 aaKnown RBP5.55□□□□□ -1.52
VPS35-205ENST00000563984 RBM14Q96PK6 669 aaKnown RBP5.55□□□□□ -1.52
VPS35-205ENST00000563984 RUFY1Q96T51 708 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 NDC1Q9BTX1 674 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 CPEB1Q9BZB8 566 aaKnown RBP5.55□□□□□ -1.52
VPS35-205ENST00000563984 QRSL1Q9H0R6 528 aaKnown RBP5.55□□□□□ -1.52
VPS35-205ENST00000563984 SYNCQ9H7C4 482 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 ATP8A2Q9NTI2 1148 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 MCM8Q9UJA3 840 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 CNPY2Q9Y2B0 182 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 IPPQ9Y573 584 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 ZMYM3Q14202 1370 aa5.55□□□□□ -1.52
VPS35-205ENST00000563984 INO80B-WBP1J3KQ70 363 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 K7ESF4 209 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 NBNO60934 754 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 FAM20BO75063 409 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 ZNF254O75437 659 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 NEBLO76041 1014 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 PRKD3O94806 890 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 PAHP00439 452 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 SLC4A1P02730 911 aa5.54□□□□□ -1.52
VPS35-205ENST00000563984 POU3F3P20264 500 aaPredicted RBP5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms