RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 FNIP1Q8TF40 1166 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 RNF141Q8WVD5 230 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 MAML1Q92585 1016 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 MRGPRX1Q96LB2 322 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 NOX5Q96PH1 765 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 PRPF18Q99633 342 aaKnown RBP5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 VRK1Q99986 396 aaPredicted RBP5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 FAM83CQ9BQN1 747 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 MYL10Q9BUA6 226 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 NDST4Q9H3R1 872 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 DECR2Q9NUI1 292 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 PNPOQ9NVS9 261 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 BABAM1Q9NWV8 329 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 HDAC5Q9UQL6 1122 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 NAALADL1Q9UQQ1 740 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 TMEM5Q9Y2B1 443 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 AKAP12Q02952 1782 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 PASKQ96RG2 1323 aa5.66□□□□□ -1.5
VPS35P1-201ENST00000563400 SLIT3O75094 1523 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 MON2Q7Z3U7 1717 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 GNAT3A8MTJ3 354 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 PTGES3LE9PB15 166 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 THAP12O43422 761 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 SCGB1D1O95968 90 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 ITGA2BP08514 1039 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 CELA3BP08861 270 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 GABRB3P28472 473 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 RGS2P41220 211 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 PREPP48147 710 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 ACTR2P61160 394 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 PSMC6P62333 389 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 DLG4P78352 724 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 NFIAQ12857 509 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 STK4Q13043 487 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 ZNF827Q17R98 1081 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 WSCD2Q2TBF2 565 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 BMP2KLQ5H9B9 411 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 ARTNQ5T4W7 220 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 LRCH2Q5VUJ6 765 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 RNF43Q68DV7 783 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 MIGA2Q7L4E1 593 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 SLFN11Q7Z7L1 901 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 KSR1Q8IVT5 923 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 SP8Q8IXZ3 490 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 LRRC71Q8N4P6 559 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 C3orf20Q8ND61 904 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 FLAD1Q8NFF5 587 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 SH3RF3Q8TEJ3 882 aaPredicted RBP5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 USP6NLQ92738 828 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 TAF4BQ92750 862 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 KIF1BPQ96EK5 621 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 FAM120BQ96EK7 910 aaKnown RBP5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 TMEM237Q96Q45 408 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 MMP19Q99542 508 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 FSD1Q9BTV5 496 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 DDX23Q9BUQ8 820 aaKnown RBP5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 ACAT2Q9BWD1 397 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 TRIM6Q9C030 488 aaPredicted RBP5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 C7orf69Q9H7B7 122 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 TBC1D23Q9NUY8 699 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 COQ3Q9NZJ6 369 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 RGL1Q9NZL6 768 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 LPAR3Q9UBY5 353 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 SH3BGRL2Q9UJC5 107 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 FBXL5Q9UKA1 691 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 PCDHA1Q9Y5I3 950 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 CD163L1Q9NR16 1453 aa5.65□□□□□ -1.5
VPS35P1-201ENST00000563400 NWD2Q9ULI1 1742 aa5.65□□□□□ -1.51
VPS35P1-201ENST00000563400 PARD3Q8TEW0 1356 aa5.64□□□□□ -1.51
VPS35P1-201ENST00000563400 NPHP3-ACAD11A0A0J9YXS1 232 aa5.64□□□□□ -1.51
VPS35P1-201ENST00000563400 SH2B2O14492 632 aaPredicted RBP5.64□□□□□ -1.51
VPS35P1-201ENST00000563400 FMO6PO60774 539 aa5.64□□□□□ -1.51
VPS35P1-201ENST00000563400 RNGTTO60942 597 aaKnown RBP5.64□□□□□ -1.51
VPS35P1-201ENST00000563400 TBX10O75333 385 aa5.64□□□□□ -1.51
VPS35P1-201ENST00000563400 USP1O94782 785 aa5.64□□□□□ -1.51
VPS35P1-201ENST00000563400 ACTL6BO94805 426 aa5.64□□□□□ -1.51
VPS35P1-201ENST00000563400 SLU7O95391 586 aaKnown RBP5.64□□□□□ -1.51
VPS35P1-201ENST00000563400 TK1P04183 234 aa5.64□□□□□ -1.51
VPS35P1-201ENST00000563400 PCP11498 1178 aaKnown RBP5.64□□□□□ -1.51
VPS35P1-201ENST00000563400 TGM1P22735 817 aa5.64□□□□□ -1.51
VPS35P1-201ENST00000563400 MAP4P27816 1152 aaKnown RBP5.64□□□□□ -1.51
VPS35P1-201ENST00000563400 TLX1P31314 330 aaPredicted RBP5.64□□□□□ -1.51
VPS35P1-201ENST00000563400 MCAMP43121 646 aa5.64□□□□□ -1.51
VPS35P1-201ENST00000563400 AARSP49588 968 aaKnown RBP eCLIP5.64□□□□□ -1.51
VPS35P1-201ENST00000563400 FLT3LGP49771 235 aa5.64□□□□□ -1.51
VPS35P1-201ENST00000563400 ALDH3A2P51648 485 aa5.64□□□□□ -1.51
VPS35P1-201ENST00000563400 RBP5P82980 135 aa5.64□□□□□ -1.51
VPS35P1-201ENST00000563400 PPP3CAQ08209 521 aa5.64□□□□□ -1.51
VPS35P1-201ENST00000563400 TFCP2Q12800 502 aa5.64□□□□□ -1.51
VPS35P1-201ENST00000563400 PRPF4BQ13523 1007 aaKnown RBP5.64□□□□□ -1.51
VPS35P1-201ENST00000563400 COG2Q14746 738 aa5.64□□□□□ -1.51
VPS35P1-201ENST00000563400 DUSP28Q4G0W2 176 aa5.64□□□□□ -1.51
VPS35P1-201ENST00000563400 KHDC1Q4VXA5 237 aaKnown RBP5.64□□□□□ -1.51
VPS35P1-201ENST00000563400 KHDC1LQ5JSQ8 128 aa5.64□□□□□ -1.51
VPS35P1-201ENST00000563400 ATG16L1Q676U5 607 aa5.64□□□□□ -1.51
VPS35P1-201ENST00000563400 LETMD1Q6P1Q0 360 aa5.64□□□□□ -1.51
VPS35P1-201ENST00000563400 MTFR2Q6P444 385 aa5.64□□□□□ -1.51
VPS35P1-201ENST00000563400 UNC13DQ70J99 1090 aa5.64□□□□□ -1.51
VPS35P1-201ENST00000563400 RNF44Q7L0R7 432 aa5.64□□□□□ -1.51
VPS35P1-201ENST00000563400 VSIG10LQ86VR7 867 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms