RNA–Protein interactions for RNA: ENST00000561065.1

LMX1B-204, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMX1B, Length 1,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-204ENST00000561065 SLC22A12Q96S37 553 aa17.06■□□□□ 0.32
LMX1B-204ENST00000561065 NELL2Q99435 816 aa17.06■□□□□ 0.32
LMX1B-204ENST00000561065 SMYD3Q9H7B4 428 aa17.06■□□□□ 0.32
LMX1B-204ENST00000561065 FBXO4Q9UKT5 387 aa17.06■□□□□ 0.32
LMX1B-204ENST00000561065 EP300Q09472 2414 aaPredicted RBP17.06■□□□□ 0.32
LMX1B-204ENST00000561065 SPECC1L-ADORA2AF8WAN1 911 aa17.05■□□□□ 0.32
LMX1B-204ENST00000561065 TACC1O75410 805 aa17.05■□□□□ 0.32
LMX1B-204ENST00000561065 VNN1O95497 513 aa17.05■□□□□ 0.32
LMX1B-204ENST00000561065 NR3C1P04150 777 aa17.05■□□□□ 0.32
LMX1B-204ENST00000561065 TDGF1P13385 188 aa17.05■□□□□ 0.32
LMX1B-204ENST00000561065 BDNFP23560 247 aa17.05■□□□□ 0.32
LMX1B-204ENST00000561065 AP3M2P53677 418 aa17.05■□□□□ 0.32
LMX1B-204ENST00000561065 USP46P62068 366 aa17.05■□□□□ 0.32
LMX1B-204ENST00000561065 CLDN10P78369 228 aa17.05■□□□□ 0.32
LMX1B-204ENST00000561065 DPYDQ12882 1025 aa17.05■□□□□ 0.32
LMX1B-204ENST00000561065 WDR72Q3MJ13 1102 aa17.05■□□□□ 0.32
LMX1B-204ENST00000561065 MDH1BQ5I0G3 518 aa17.05■□□□□ 0.32
LMX1B-204ENST00000561065 SLC9A9Q8IVB4 645 aa17.05■□□□□ 0.32
LMX1B-204ENST00000561065 CELF5Q8N6W0 485 aaKnown RBP17.05■□□□□ 0.32
LMX1B-204ENST00000561065 CSGALNACT1Q8TDX6 532 aa17.05■□□□□ 0.32
LMX1B-204ENST00000561065 TMEM174Q8WUU8 243 aa17.05■□□□□ 0.32
LMX1B-204ENST00000561065 NELL1Q92832 810 aa17.05■□□□□ 0.32
LMX1B-204ENST00000561065 HPS4Q9NQG7 708 aa17.05■□□□□ 0.32
LMX1B-204ENST00000561065 RBM12Q9NTZ6 932 aaKnown RBP17.05■□□□□ 0.32
LMX1B-204ENST00000561065 SPTBN4Q9H254 2564 aa17.05■□□□□ 0.32
LMX1B-204ENST00000561065 OTOL1A6NHN0 477 aaPredicted RBP17.04■□□□□ 0.32
LMX1B-204ENST00000561065 PDXKO00764 312 aa17.04■□□□□ 0.32
LMX1B-204ENST00000561065 NCAM2O15394 837 aa17.04■□□□□ 0.32
LMX1B-204ENST00000561065 CALUO43852 315 aaPredicted RBP17.04■□□□□ 0.32
LMX1B-204ENST00000561065 C4BPAP04003 597 aaKnown RBP17.04■□□□□ 0.32
LMX1B-204ENST00000561065 DDX6P26196 483 aaKnown RBP eCLIP17.04■□□□□ 0.32
LMX1B-204ENST00000561065 RPL13P26373 211 aaKnown RBP17.04■□□□□ 0.32
LMX1B-204ENST00000561065 RAP1GAPP47736 663 aa17.04■□□□□ 0.32
LMX1B-204ENST00000561065 MLLT6P55198 1093 aaPredicted RBP17.04■□□□□ 0.32
LMX1B-204ENST00000561065 TNNC1P63316 161 aa17.04■□□□□ 0.32
LMX1B-204ENST00000561065 CSTF1Q05048 431 aaKnown RBP17.04■□□□□ 0.32
LMX1B-204ENST00000561065 FAM160A1Q05DH4 1040 aa17.04■□□□□ 0.32
LMX1B-204ENST00000561065 KCNB1Q14721 858 aa17.04■□□□□ 0.32
LMX1B-204ENST00000561065 ZNF528Q3MIS6 628 aa17.04■□□□□ 0.32
LMX1B-204ENST00000561065 C1orf220Q5T0J3 134 aa17.04■□□□□ 0.32
LMX1B-204ENST00000561065 TRIM68Q6AZZ1 485 aa17.04■□□□□ 0.32
LMX1B-204ENST00000561065 C4orf50Q6ZRC1 276 aa17.04■□□□□ 0.32
LMX1B-204ENST00000561065 Q6ZS52 159 aa17.04■□□□□ 0.32
LMX1B-204ENST00000561065 MON1AQ86VX9 555 aa17.04■□□□□ 0.32
LMX1B-204ENST00000561065 ADSSL1Q8N142 457 aa17.04■□□□□ 0.32
LMX1B-204ENST00000561065 MYCBPAPQ8TBZ2 947 aa17.04■□□□□ 0.32
LMX1B-204ENST00000561065 MRPS31Q92665 395 aaKnown RBP17.04■□□□□ 0.32
LMX1B-204ENST00000561065 TIGD1Q96MW7 591 aa17.04■□□□□ 0.32
LMX1B-204ENST00000561065 FAM83CQ9BQN1 747 aa17.04■□□□□ 0.32
LMX1B-204ENST00000561065 SDCBP2Q9H190 292 aa17.04■□□□□ 0.32
LMX1B-204ENST00000561065 VRTNQ9H8Y1 702 aa17.04■□□□□ 0.32
LMX1B-204ENST00000561065 LMAN1LQ9HAT1 526 aa17.04■□□□□ 0.32
LMX1B-204ENST00000561065 CHMP5Q9NZZ3 219 aa17.04■□□□□ 0.32
LMX1B-204ENST00000561065 NXF1Q9UBU9 619 aaKnown RBP17.04■□□□□ 0.32
LMX1B-204ENST00000561065 FRMD4BQ9Y2L6 1034 aa17.04■□□□□ 0.32
LMX1B-204ENST00000561065 DNAH14Q0VDD8 3507 aa17.04■□□□□ 0.32
LMX1B-204ENST00000561065 RHOBTB3O94955 611 aa17.03■□□□□ 0.32
LMX1B-204ENST00000561065 LMNAP02545 664 aaKnown RBP17.03■□□□□ 0.32
LMX1B-204ENST00000561065 AVPR1AP37288 418 aa17.03■□□□□ 0.32
LMX1B-204ENST00000561065 KPNA1P52294 538 aaPredicted RBP17.03■□□□□ 0.32
LMX1B-204ENST00000561065 CYP27A1Q02318 531 aa17.03■□□□□ 0.32
LMX1B-204ENST00000561065 USP4Q13107 963 aa17.03■□□□□ 0.32
LMX1B-204ENST00000561065 ZC3H14Q6PJT7 736 aaKnown RBP17.03■□□□□ 0.32
LMX1B-204ENST00000561065 VSTM1Q6UX27 236 aa17.03■□□□□ 0.32
LMX1B-204ENST00000561065 SCARA5Q6ZMJ2 495 aa17.03■□□□□ 0.32
LMX1B-204ENST00000561065 OR6B3Q8NGW1 331 aa17.03■□□□□ 0.32
LMX1B-204ENST00000561065 MSANTD3Q96H12 275 aa17.03■□□□□ 0.32
LMX1B-204ENST00000561065 ZNF518BQ9C0D4 1074 aa17.03■□□□□ 0.32
LMX1B-204ENST00000561065 C8orf33Q9H7E9 229 aaPredicted RBP17.03■□□□□ 0.32
LMX1B-204ENST00000561065 TRPC7Q9HCX4 862 aa17.03■□□□□ 0.32
LMX1B-204ENST00000561065 TDP1Q9NUW8 608 aa17.03■□□□□ 0.32
LMX1B-204ENST00000561065 MAGEC2Q9UBF1 373 aaPredicted RBP17.03■□□□□ 0.32
LMX1B-204ENST00000561065 UXTQ9UBK9 157 aaPredicted RBP17.03■□□□□ 0.32
LMX1B-204ENST00000561065 ZMYM5Q9UJ78 669 aa17.03■□□□□ 0.32
LMX1B-204ENST00000561065 C2orf78A6NCI8 922 aa17.02■□□□□ 0.32
LMX1B-204ENST00000561065 F8VP50 259 aa17.02■□□□□ 0.32
LMX1B-204ENST00000561065 ARSAP15289 507 aa17.02■□□□□ 0.32
LMX1B-204ENST00000561065 ATICP31939 592 aa17.02■□□□□ 0.32
LMX1B-204ENST00000561065 GNL1P36915 607 aaPredicted RBP17.02■□□□□ 0.32
LMX1B-204ENST00000561065 CDH8P55286 799 aa17.02■□□□□ 0.32
LMX1B-204ENST00000561065 PLCB2Q00722 1185 aa17.02■□□□□ 0.32
LMX1B-204ENST00000561065 BIRC3Q13489 604 aa17.02■□□□□ 0.32
LMX1B-204ENST00000561065 TRPC3Q13507 836 aa17.02■□□□□ 0.32
LMX1B-204ENST00000561065 NCOA4Q13772 614 aa17.02■□□□□ 0.32
LMX1B-204ENST00000561065 ZNF77Q15935 545 aa17.02■□□□□ 0.32
LMX1B-204ENST00000561065 ZNF699Q32M78 642 aa17.02■□□□□ 0.32
LMX1B-204ENST00000561065 RALGPS2Q86X27 583 aaPredicted RBP17.02■□□□□ 0.32
LMX1B-204ENST00000561065 SUMF1Q8NBK3 374 aa17.02■□□□□ 0.32
LMX1B-204ENST00000561065 ZBTB44Q8NCP5 570 aa17.02■□□□□ 0.32
LMX1B-204ENST00000561065 SYAP1Q96A49 352 aaPredicted RBP17.02■□□□□ 0.32
LMX1B-204ENST00000561065 SPATA17Q96L03 361 aa17.02■□□□□ 0.32
LMX1B-204ENST00000561065 GSDMAQ96QA5 445 aa17.02■□□□□ 0.32
LMX1B-204ENST00000561065 SNX25Q9H3E2 840 aa17.02■□□□□ 0.32
LMX1B-204ENST00000561065 KIF9Q9HAQ2 790 aa17.02■□□□□ 0.32
LMX1B-204ENST00000561065 C2orf42Q9NWW7 574 aa17.02■□□□□ 0.32
LMX1B-204ENST00000561065 GCNT4Q9P109 453 aa17.02■□□□□ 0.32
LMX1B-204ENST00000561065 MAPK8IP1Q9UQF2 711 aa17.02■□□□□ 0.32
LMX1B-204ENST00000561065 TRAF3IP3Q9Y228 551 aa17.02■□□□□ 0.32
LMX1B-204ENST00000561065 MYH10P35580 1976 aa17.01■□□□□ 0.31
LMX1B-204ENST00000561065 CLDN5O00501 218 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms