RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	RPN1	P04843	607 aa	Known RBP	15.03	■□□□□ -0
TPM1-223	ENST00000560445	GRSF1	Q12849	480 aa	Known RBP eCLIP	15.03	■□□□□ -0
TPM1-223	ENST00000560445	NR1H3	Q13133	447 aa		15.03	■□□□□ -0
TPM1-223	ENST00000560445	ZNF699	Q32M78	642 aa		15.03	■□□□□ -0
TPM1-223	ENST00000560445	ZNF667	Q5HYK9	610 aa		15.03	■□□□□ -0
TPM1-223	ENST00000560445	POTEH	Q6S545	545 aa		15.03	■□□□□ -0
TPM1-223	ENST00000560445	DENND5B	Q6ZUT9	1274 aa		15.03	■□□□□ -0
TPM1-223	ENST00000560445	ZBTB44	Q8NCP5	570 aa		15.03	■□□□□ -0
TPM1-223	ENST00000560445	CCDC150	Q8NCX0	1101 aa		15.03	■□□□□ -0
TPM1-223	ENST00000560445	PDZD8	Q8NEN9	1154 aa		15.03	■□□□□ -0
TPM1-223	ENST00000560445	KBTBD7	Q8WVZ9	684 aa		15.03	■□□□□ -0
TPM1-223	ENST00000560445	ATP2A3	Q93084	1043 aa		15.03	■□□□□ -0
TPM1-223	ENST00000560445	MYLPF	Q96A32	169 aa		15.03	■□□□□ -0
TPM1-223	ENST00000560445	SLITRK1	Q96PX8	696 aa		15.03	■□□□□ -0
TPM1-223	ENST00000560445	GTPBP4	Q9BZE4	634 aa	Known RBP	15.03	■□□□□ -0
TPM1-223	ENST00000560445	VRTN	Q9H8Y1	702 aa		15.03	■□□□□ -0
TPM1-223	ENST00000560445	TRPM5	Q9NZQ8	1165 aa		15.03	■□□□□ -0
TPM1-223	ENST00000560445	NCDN	Q9UBB6	729 aa		15.03	■□□□□ -0
TPM1-223	ENST00000560445	HPSE	Q9Y251	543 aa		15.03	■□□□□ -0
TPM1-223	ENST00000560445		A8MXQ7	604 aa		15.02	■□□□□ -0
TPM1-223	ENST00000560445	NRG2	O14511	850 aa	Predicted RBP	15.02	■□□□□ -0
TPM1-223	ENST00000560445	IKBKB	O14920	756 aa		15.02	■□□□□ -0
TPM1-223	ENST00000560445	MAPK13	O15264	365 aa		15.02	■□□□□ -0
TPM1-223	ENST00000560445	PAPSS2	O95340	614 aa	Predicted RBP	15.02	■□□□□ -0
TPM1-223	ENST00000560445	SDHB	P21912	280 aa		15.02	■□□□□ -0
TPM1-223	ENST00000560445	CNR2	P34972	360 aa		15.02	■□□□□ -0
TPM1-223	ENST00000560445	IFNAR2	P48551	515 aa		15.02	■□□□□ -0
TPM1-223	ENST00000560445	PSMC1	P62191	440 aa	Known RBP	15.02	■□□□□ -0
TPM1-223	ENST00000560445	ENPEP	Q07075	957 aa		15.02	■□□□□ -0
TPM1-223	ENST00000560445	RUNX3	Q13761	415 aa		15.02	■□□□□ -0
TPM1-223	ENST00000560445	PKP1	Q13835	747 aa		15.02	■□□□□ -0
TPM1-223	ENST00000560445	KMT5B	Q4FZB7	885 aa		15.02	■□□□□ -0
TPM1-223	ENST00000560445	OSTM1	Q86WC4	334 aa		15.02	■□□□□ -0
TPM1-223	ENST00000560445	DDX42	Q86XP3	938 aa	Known RBP eCLIP	15.02	■□□□□ -0
TPM1-223	ENST00000560445	MAML2	Q8IZL2	1156 aa	Predicted RBP	15.02	■□□□□ -0
TPM1-223	ENST00000560445	ZNF687	Q8N1G0	1237 aa		15.02	■□□□□ -0
TPM1-223	ENST00000560445	TMC2	Q8TDI7	906 aa		15.02	■□□□□ -0
TPM1-223	ENST00000560445	RSPRY1	Q96DX4	576 aa		15.02	■□□□□ -0
TPM1-223	ENST00000560445	C8orf48	Q96LL4	319 aa		15.02	■□□□□ -0
TPM1-223	ENST00000560445	EPC1	Q9H2F5	836 aa		15.02	■□□□□ -0
TPM1-223	ENST00000560445	TRPC7	Q9HCX4	862 aa		15.02	■□□□□ -0
TPM1-223	ENST00000560445	USP34	Q70CQ2	3546 aa		15.01	□□□□□ -0.01
TPM1-223	ENST00000560445	EP300	Q09472	2414 aa	Predicted RBP	15.01	□□□□□ -0.01
TPM1-223	ENST00000560445	FAM237A	A0A1B0GTK4	181 aa		15.01	□□□□□ -0.01
TPM1-223	ENST00000560445		A0A1B0GVL5	298 aa		15.01	□□□□□ -0.01
TPM1-223	ENST00000560445	GOLGA6L4	A6NEF3	574 aa		15.01	□□□□□ -0.01
TPM1-223	ENST00000560445	RTN3	O95197	1032 aa	Predicted RBP	15.01	□□□□□ -0.01
TPM1-223	ENST00000560445	NR3C1	P04150	777 aa		15.01	□□□□□ -0.01
TPM1-223	ENST00000560445	PDGFRB	P09619	1106 aa		15.01	□□□□□ -0.01
TPM1-223	ENST00000560445	CHRNB1	P11230	501 aa		15.01	□□□□□ -0.01
TPM1-223	ENST00000560445	KRT13	P13646	458 aa		15.01	□□□□□ -0.01
TPM1-223	ENST00000560445	TCF3	P15923	654 aa		15.01	□□□□□ -0.01
TPM1-223	ENST00000560445	NOP14	P78316	857 aa	Known RBP	15.01	□□□□□ -0.01
TPM1-223	ENST00000560445	CLDN10	P78369	228 aa		15.01	□□□□□ -0.01
TPM1-223	ENST00000560445	NCOA4	Q13772	614 aa		15.01	□□□□□ -0.01
TPM1-223	ENST00000560445	MTF1	Q14872	753 aa		15.01	□□□□□ -0.01
TPM1-223	ENST00000560445	SGSM1	Q2NKQ1	1148 aa		15.01	□□□□□ -0.01
TPM1-223	ENST00000560445	FBXO43	Q4G163	708 aa		15.01	□□□□□ -0.01
TPM1-223	ENST00000560445	MDH1B	Q5I0G3	518 aa		15.01	□□□□□ -0.01
TPM1-223	ENST00000560445	TDRD10	Q5VZ19	366 aa	Known RBP	15.01	□□□□□ -0.01
TPM1-223	ENST00000560445	TXNDC8	Q6A555	127 aa		15.01	□□□□□ -0.01
TPM1-223	ENST00000560445	INTS8	Q75QN2	995 aa	Known RBP	15.01	□□□□□ -0.01
TPM1-223	ENST00000560445	TMEM150A	Q86TG1	271 aa		15.01	□□□□□ -0.01
TPM1-223	ENST00000560445	STKLD1	Q8NE28	680 aa		15.01	□□□□□ -0.01
TPM1-223	ENST00000560445	PARD3B	Q8TEW8	1205 aa		15.01	□□□□□ -0.01
TPM1-223	ENST00000560445	NELL1	Q92832	810 aa		15.01	□□□□□ -0.01
TPM1-223	ENST00000560445	USP13	Q92995	863 aa	Predicted RBP	15.01	□□□□□ -0.01
TPM1-223	ENST00000560445	PCED1B	Q96HM7	432 aa		15.01	□□□□□ -0.01
TPM1-223	ENST00000560445	GKN1	Q9NS71	199 aa		15.01	□□□□□ -0.01
TPM1-223	ENST00000560445	RMND1	Q9NWS8	449 aa		15.01	□□□□□ -0.01
TPM1-223	ENST00000560445	NXF1	Q9UBU9	619 aa	Known RBP	15.01	□□□□□ -0.01
TPM1-223	ENST00000560445	HOOK1	Q9UJC3	728 aa	Known RBP	15.01	□□□□□ -0.01
TPM1-223	ENST00000560445	GMEB2	Q9UKD1	530 aa		15.01	□□□□□ -0.01
TPM1-223	ENST00000560445	NCAN	O14594	1321 aa		15	□□□□□ -0.01
TPM1-223	ENST00000560445	OBSL1	O75147	1896 aa		15	□□□□□ -0.01
TPM1-223	ENST00000560445	KIF26A	Q9ULI4	1882 aa	Predicted RBP	15	□□□□□ -0.01
TPM1-223	ENST00000560445	SLC9A3R1	O14745	358 aa	Predicted RBP	15	□□□□□ -0.01
TPM1-223	ENST00000560445	KLRC4	O43908	158 aa		15	□□□□□ -0.01
TPM1-223	ENST00000560445	RHOBTB3	O94955	611 aa		15	□□□□□ -0.01
TPM1-223	ENST00000560445	PTPN1	P18031	435 aa	Known RBP	15	□□□□□ -0.01
TPM1-223	ENST00000560445	HDC	P19113	662 aa		15	□□□□□ -0.01
TPM1-223	ENST00000560445	DRD1	P21728	446 aa		15	□□□□□ -0.01
TPM1-223	ENST00000560445	BDNF	P23560	247 aa		15	□□□□□ -0.01
TPM1-223	ENST00000560445	CASP1	P29466	404 aa		15	□□□□□ -0.01
TPM1-223	ENST00000560445	GPR15	P49685	360 aa		15	□□□□□ -0.01
TPM1-223	ENST00000560445	MYL6	P60660	151 aa		15	□□□□□ -0.01
TPM1-223	ENST00000560445	STK4	Q13043	487 aa		15	□□□□□ -0.01
TPM1-223	ENST00000560445	FZD5	Q13467	585 aa		15	□□□□□ -0.01
TPM1-223	ENST00000560445	NFIL3	Q16649	462 aa		15	□□□□□ -0.01
TPM1-223	ENST00000560445	GRAMD1C	Q8IYS0	662 aa		15	□□□□□ -0.01
TPM1-223	ENST00000560445	B3GALNT2	Q8NCR0	500 aa		15	□□□□□ -0.01
TPM1-223	ENST00000560445	KIAA0895	Q8NCT3	520 aa		15	□□□□□ -0.01
TPM1-223	ENST00000560445	OVCA2	Q8WZ82	227 aa		15	□□□□□ -0.01
TPM1-223	ENST00000560445	FAM83C	Q9BQN1	747 aa		15	□□□□□ -0.01
TPM1-223	ENST00000560445	DMAC2	Q9NW81	257 aa		15	□□□□□ -0.01
TPM1-223	ENST00000560445	DUS2	Q9NX74	493 aa	Known RBP	15	□□□□□ -0.01
TPM1-223	ENST00000560445	GTSE1	Q9NYZ3	720 aa		15	□□□□□ -0.01
TPM1-223	ENST00000560445	ARHGAP26	Q9UNA1	814 aa		15	□□□□□ -0.01
TPM1-223	ENST00000560445	SMG5	Q9UPR3	1016 aa	Known RBP	15	□□□□□ -0.01
TPM1-223	ENST00000560445	TRAF3IP3	Q9Y228	551 aa		15	□□□□□ -0.01

Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms