RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 THAP12O43422 761 aa10.68□□□□□ -0.7
USP3-216ENST00000559873 RFPL2O75678 378 aa10.68□□□□□ -0.7
USP3-216ENST00000559873 PAPLNO95428 1278 aa10.68□□□□□ -0.7
USP3-216ENST00000559873 SEC24AO95486 1093 aa10.68□□□□□ -0.7
USP3-216ENST00000559873 VNN2O95498 520 aa10.68□□□□□ -0.7
USP3-216ENST00000559873 CSH1P0DML2 217 aa10.68□□□□□ -0.7
USP3-216ENST00000559873 CSH2P0DML3 217 aa10.68□□□□□ -0.7
USP3-216ENST00000559873 NPR3P17342 541 aa10.68□□□□□ -0.7
USP3-216ENST00000559873 BDNFP23560 247 aa10.68□□□□□ -0.7
USP3-216ENST00000559873 CYP2F1P24903 491 aa10.68□□□□□ -0.7
USP3-216ENST00000559873 KLK7P49862 253 aa10.68□□□□□ -0.7
USP3-216ENST00000559873 RBM10P98175 930 aaKnown RBP10.68□□□□□ -0.7
USP3-216ENST00000559873 GOLGA7BQ2TAP0 167 aa10.68□□□□□ -0.7
USP3-216ENST00000559873 SPECC1LQ69YQ0 1117 aa10.68□□□□□ -0.7
USP3-216ENST00000559873 TMC5Q6UXY8 1006 aa10.68□□□□□ -0.7
USP3-216ENST00000559873 GPR149Q86SP6 731 aa10.68□□□□□ -0.7
USP3-216ENST00000559873 FAM71AQ8IYT1 594 aa10.68□□□□□ -0.7
USP3-216ENST00000559873 FUKQ8N0W3 1084 aa10.68□□□□□ -0.7
USP3-216ENST00000559873 C12orf29Q8N999 325 aa10.68□□□□□ -0.7
USP3-216ENST00000559873 ZNF397Q8NF99 534 aaPredicted RBP10.68□□□□□ -0.7
USP3-216ENST00000559873 MSLNLQ96KJ4 702 aa10.68□□□□□ -0.7
USP3-216ENST00000559873 B3GNT5Q9BYG0 378 aa10.68□□□□□ -0.7
USP3-216ENST00000559873 PDCL3Q9H2J4 239 aa10.68□□□□□ -0.7
USP3-216ENST00000559873 UXTQ9UBK9 157 aaPredicted RBP10.68□□□□□ -0.7
USP3-216ENST00000559873 TSPAN16Q9UKR8 245 aa10.68□□□□□ -0.7
USP3-216ENST00000559873 SLC27A5Q9Y2P5 690 aa10.68□□□□□ -0.7
USP3-216ENST00000559873 CEP83Q9Y592 693 aa10.68□□□□□ -0.7
USP3-216ENST00000559873 MTCL1Q9Y4B5 1905 aaKnown RBP10.67□□□□□ -0.7
USP3-216ENST00000559873 A0A1W2PQJ5 194 aa10.67□□□□□ -0.7
USP3-216ENST00000559873 O00370 1275 aa10.67□□□□□ -0.7
USP3-216ENST00000559873 NOL4O94818 638 aa10.67□□□□□ -0.7
USP3-216ENST00000559873 RTN3O95197 1032 aaPredicted RBP10.67□□□□□ -0.7
USP3-216ENST00000559873 SETSIPP0DME0 302 aa10.67□□□□□ -0.7
USP3-216ENST00000559873 FERP16591 822 aa10.67□□□□□ -0.7
USP3-216ENST00000559873 PTPN2P17706 415 aa10.67□□□□□ -0.7
USP3-216ENST00000559873 ATF6P18850 670 aa10.67□□□□□ -0.7
USP3-216ENST00000559873 BRD2P25440 801 aaKnown RBP10.67□□□□□ -0.7
USP3-216ENST00000559873 SOX5P35711 763 aa10.67□□□□□ -0.7
USP3-216ENST00000559873 LTBRP36941 435 aa10.67□□□□□ -0.7
USP3-216ENST00000559873 DLX2Q07687 328 aaPredicted RBP10.67□□□□□ -0.7
USP3-216ENST00000559873 BST2Q10589 180 aaKnown RBP10.67□□□□□ -0.7
USP3-216ENST00000559873 CCDC142Q17RM4 750 aa10.67□□□□□ -0.7
USP3-216ENST00000559873 LEXMQ3ZCV2 418 aa10.67□□□□□ -0.7
USP3-216ENST00000559873 PPP1R26Q5T8A7 1209 aaPredicted RBP10.67□□□□□ -0.7
USP3-216ENST00000559873 CYP4A22Q5TCH4 519 aa10.67□□□□□ -0.7
USP3-216ENST00000559873 DPY19L2P1Q6NXN4 242 aa10.67□□□□□ -0.7
USP3-216ENST00000559873 SYCE2Q6PIF2 218 aa10.67□□□□□ -0.7
USP3-216ENST00000559873 DENND5BQ6ZUT9 1274 aa10.67□□□□□ -0.7
USP3-216ENST00000559873 PDZD4Q76G19 769 aaPredicted RBP10.67□□□□□ -0.7
USP3-216ENST00000559873 GAS2L3Q86XJ1 694 aa10.67□□□□□ -0.7
USP3-216ENST00000559873 ZNF677Q86XU0 584 aa10.67□□□□□ -0.7
USP3-216ENST00000559873 VSTM4Q8IW00 320 aa10.67□□□□□ -0.7
USP3-216ENST00000559873 ANKRD52Q8NB46 1076 aa10.67□□□□□ -0.7
USP3-216ENST00000559873 PSMG2Q969U7 264 aa10.67□□□□□ -0.7
USP3-216ENST00000559873 SPATA17Q96L03 361 aa10.67□□□□□ -0.7
USP3-216ENST00000559873 NOX5Q96PH1 765 aa10.67□□□□□ -0.7
USP3-216ENST00000559873 DUSP16Q9BY84 665 aa10.67□□□□□ -0.7
USP3-216ENST00000559873 CRISPLD1Q9H336 500 aa10.67□□□□□ -0.7
USP3-216ENST00000559873 PNPLA8Q9NP80 782 aa10.67□□□□□ -0.7
USP3-216ENST00000559873 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.67□□□□□ -0.7
USP3-216ENST00000559873 CLUHO75153 1309 aa10.66□□□□□ -0.7
USP3-216ENST00000559873 F8VP50 259 aa10.66□□□□□ -0.7
USP3-216ENST00000559873 M0QYV0 167 aa10.66□□□□□ -0.7
USP3-216ENST00000559873 FOXN3O00409 490 aaPredicted RBP10.66□□□□□ -0.7
USP3-216ENST00000559873 CLDN5O00501 218 aa10.66□□□□□ -0.7
USP3-216ENST00000559873 ZNF197O14709 1029 aa10.66□□□□□ -0.7
USP3-216ENST00000559873 EPHB6O15197 1021 aa10.66□□□□□ -0.7
USP3-216ENST00000559873 CYP26A1O43174 497 aa10.66□□□□□ -0.7
USP3-216ENST00000559873 CDC25CP30307 473 aa10.66□□□□□ -0.7
USP3-216ENST00000559873 KRT9P35527 623 aa10.66□□□□□ -0.7
USP3-216ENST00000559873 PBX1P40424 430 aa10.66□□□□□ -0.7
USP3-216ENST00000559873 JAM2P57087 298 aa10.66□□□□□ -0.7
USP3-216ENST00000559873 CBX2Q14781 532 aaPredicted RBP10.66□□□□□ -0.7
USP3-216ENST00000559873 CLUL1Q15846 466 aa10.66□□□□□ -0.7
USP3-216ENST00000559873 CNGA2Q16280 664 aa10.66□□□□□ -0.7
USP3-216ENST00000559873 DDR2Q16832 855 aa10.66□□□□□ -0.7
USP3-216ENST00000559873 PABPC1LQ4VXU2 614 aaKnown RBP10.66□□□□□ -0.7
USP3-216ENST00000559873 LCLAT1Q6UWP7 414 aa10.66□□□□□ -0.7
USP3-216ENST00000559873 CLEC20AQ6ZU45 233 aa10.66□□□□□ -0.7
USP3-216ENST00000559873 TTC9BQ8N6N2 239 aa10.66□□□□□ -0.7
USP3-216ENST00000559873 C12orf76Q8N812 135 aaPredicted RBP10.66□□□□□ -0.7
USP3-216ENST00000559873 MSANTD4Q8NCY6 345 aa10.66□□□□□ -0.7
USP3-216ENST00000559873 ZNF707Q96C28 371 aaPredicted RBP10.66□□□□□ -0.7
USP3-216ENST00000559873 MRFAP1L1Q96HT8 127 aa10.66□□□□□ -0.7
USP3-216ENST00000559873 SLITRK1Q96PX8 696 aa10.66□□□□□ -0.7
USP3-216ENST00000559873 APOL5Q9BWW9 433 aa10.66□□□□□ -0.7
USP3-216ENST00000559873 GPR88Q9GZN0 384 aa10.66□□□□□ -0.7
USP3-216ENST00000559873 FBXO44Q9H4M3 255 aa10.66□□□□□ -0.7
USP3-216ENST00000559873 CSNK1G1Q9HCP0 422 aa10.66□□□□□ -0.7
USP3-216ENST00000559873 COMMD8Q9NX08 183 aa10.66□□□□□ -0.7
USP3-216ENST00000559873 ZMYM5Q9UJ78 669 aa10.66□□□□□ -0.7
USP3-216ENST00000559873 AJAP1Q9UKB5 411 aaPredicted RBP10.66□□□□□ -0.7
USP3-216ENST00000559873 LUC7L2Q9Y383 392 aaKnown RBP10.66□□□□□ -0.7
USP3-216ENST00000559873 USP15Q9Y4E8 981 aaPredicted RBP10.66□□□□□ -0.7
USP3-216ENST00000559873 LRRC53A6NM62 1247 aa10.65□□□□□ -0.7
USP3-216ENST00000559873 SLC38A8A6NNN8 435 aa10.65□□□□□ -0.7
USP3-216ENST00000559873 GOLGA6L6A8MZA4 724 aa10.65□□□□□ -0.7
USP3-216ENST00000559873 RNF225M0QZC1 329 aaPredicted RBP10.65□□□□□ -0.7
USP3-216ENST00000559873 XPO1O14980 1071 aaKnown RBP10.65□□□□□ -0.7
USP3-216ENST00000559873 MBTPS2O43462 519 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms