RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 TDRD15B5MCY1 1934 aaKnown RBP18.78■□□□□ 0.6
SNX1-208ENST00000559844 TMEM191CA6NGB0 347 aa18.77■□□□□ 0.6
SNX1-208ENST00000559844 GOLGA8KD6RF30 607 aa18.77■□□□□ 0.6
SNX1-208ENST00000559844 CILPO75339 1184 aa18.77■□□□□ 0.6
SNX1-208ENST00000559844 RECQL4O94761 1208 aa18.77■□□□□ 0.6
SNX1-208ENST00000559844 AMHP03971 560 aa18.77■□□□□ 0.6
SNX1-208ENST00000559844 RAP1GAPP47736 663 aa18.77■□□□□ 0.6
SNX1-208ENST00000559844 YARSP54577 528 aaKnown RBP18.77■□□□□ 0.6
SNX1-208ENST00000559844 MLLT1Q03111 559 aaPredicted RBP18.77■□□□□ 0.6
SNX1-208ENST00000559844 DUPD1Q68J44 220 aa18.77■□□□□ 0.6
SNX1-208ENST00000559844 MRPL10Q7Z7H8 261 aaKnown RBP18.77■□□□□ 0.6
SNX1-208ENST00000559844 ZNF598Q86UK7 904 aaKnown RBP18.77■□□□□ 0.6
SNX1-208ENST00000559844 PGBD4Q96DM1 585 aa18.77■□□□□ 0.6
SNX1-208ENST00000559844 KIF12Q96FN5 646 aa18.77■□□□□ 0.6
SNX1-208ENST00000559844 SH3GL2Q99962 352 aa18.77■□□□□ 0.6
SNX1-208ENST00000559844 TRIM51Q9BSJ1 452 aa18.77■□□□□ 0.6
SNX1-208ENST00000559844 SDCBP2Q9H190 292 aa18.77■□□□□ 0.6
SNX1-208ENST00000559844 TMEM161AQ9NX61 479 aa18.77■□□□□ 0.6
SNX1-208ENST00000559844 LRFN2Q9ULH4 789 aa18.77■□□□□ 0.6
SNX1-208ENST00000559844 TCRBV5S1A1TA0A578 114 aa18.77■□□□□ 0.59
SNX1-208ENST00000559844 EOMESO95936 686 aa18.77■□□□□ 0.59
SNX1-208ENST00000559844 RARAP10276 462 aa18.77■□□□□ 0.59
SNX1-208ENST00000559844 COILP38432 576 aaPredicted RBP18.77■□□□□ 0.59
SNX1-208ENST00000559844 PTGIRP43119 386 aa18.77■□□□□ 0.59
SNX1-208ENST00000559844 DEFB103AP81534 67 aa18.77■□□□□ 0.59
SNX1-208ENST00000559844 SIX1Q15475 284 aaPredicted RBP18.77■□□□□ 0.59
SNX1-208ENST00000559844 CCDC137Q6PK04 289 aaKnown RBP18.77■□□□□ 0.59
SNX1-208ENST00000559844 DDX42Q86XP3 938 aaKnown RBP eCLIP18.77■□□□□ 0.59
SNX1-208ENST00000559844 KATNAL2Q8IYT4 538 aa18.77■□□□□ 0.59
SNX1-208ENST00000559844 C3orf20Q8ND61 904 aa18.77■□□□□ 0.59
SNX1-208ENST00000559844 C18orf8Q96DM3 657 aa18.77■□□□□ 0.59
SNX1-208ENST00000559844 TMEM176AQ96HP8 235 aa18.77■□□□□ 0.59
SNX1-208ENST00000559844 LRRC19Q9H756 370 aa18.77■□□□□ 0.59
SNX1-208ENST00000559844 SMYD3Q9H7B4 428 aa18.77■□□□□ 0.59
SNX1-208ENST00000559844 PSD3Q9NYI0 1048 aa18.77■□□□□ 0.59
SNX1-208ENST00000559844 CXXC1Q9P0U4 656 aaPredicted RBP18.77■□□□□ 0.59
SNX1-208ENST00000559844 ADAM21Q9UKJ8 722 aa18.77■□□□□ 0.59
SNX1-208ENST00000559844 PCDHB7Q9Y5E2 793 aa18.77■□□□□ 0.59
SNX1-208ENST00000559844 FNDC1Q4ZHG4 1894 aaPredicted RBP18.76■□□□□ 0.59
SNX1-208ENST00000559844 CETN2P41208 172 aa18.76■□□□□ 0.59
SNX1-208ENST00000559844 CDH8P55286 799 aa18.76■□□□□ 0.59
SNX1-208ENST00000559844 DMTNQ08495 405 aa18.76■□□□□ 0.59
SNX1-208ENST00000559844 MYO1EQ12965 1108 aa18.76■□□□□ 0.59
SNX1-208ENST00000559844 MTMR3Q13615 1198 aa18.76■□□□□ 0.59
SNX1-208ENST00000559844 DENND1BQ6P3S1 775 aa18.76■□□□□ 0.59
SNX1-208ENST00000559844 DCUN1D2Q6PH85 259 aa18.76■□□□□ 0.59
SNX1-208ENST00000559844 WDTC1Q8N5D0 677 aa18.76■□□□□ 0.59
SNX1-208ENST00000559844 SLC4A11Q8NBS3 891 aa18.76■□□□□ 0.59
SNX1-208ENST00000559844 HERVK_113Q902F9 699 aa18.76■□□□□ 0.59
SNX1-208ENST00000559844 DPH5Q9H2P9 285 aa18.76■□□□□ 0.59
SNX1-208ENST00000559844 ELAC1Q9H777 363 aaKnown RBP18.76■□□□□ 0.59
SNX1-208ENST00000559844 KLK14Q9P0G3 267 aa18.76■□□□□ 0.59
SNX1-208ENST00000559844 WDR35Q9P2L0 1181 aa18.76■□□□□ 0.59
SNX1-208ENST00000559844 KIAA1257Q9ULG3 409 aa18.76■□□□□ 0.59
SNX1-208ENST00000559844 UPP2O95045 317 aa18.75■□□□□ 0.59
SNX1-208ENST00000559844 FGFR1P11362 822 aa18.75■□□□□ 0.59
SNX1-208ENST00000559844 VDRP11473 427 aa18.75■□□□□ 0.59
SNX1-208ENST00000559844 PIGHQ14442 188 aaPredicted RBP18.75■□□□□ 0.59
SNX1-208ENST00000559844 AGMOQ6ZNB7 445 aa18.75■□□□□ 0.59
SNX1-208ENST00000559844 NPAS4Q8IUM7 802 aa18.75■□□□□ 0.59
SNX1-208ENST00000559844 ZDHHC14Q8IZN3 488 aa18.75■□□□□ 0.59
SNX1-208ENST00000559844 IQCKQ8N0W5 287 aa18.75■□□□□ 0.59
SNX1-208ENST00000559844 EXD1Q8NHP7 514 aa18.75■□□□□ 0.59
SNX1-208ENST00000559844 ZIM3Q96PE6 472 aa18.75■□□□□ 0.59
SNX1-208ENST00000559844 UBE2OQ9C0C9 1292 aaKnown RBP18.75■□□□□ 0.59
SNX1-208ENST00000559844 HOMER3Q9NSC5 361 aa18.75■□□□□ 0.59
SNX1-208ENST00000559844 GSCP56915 257 aaPredicted RBP18.75■□□□□ 0.59
SNX1-208ENST00000559844 INCA1Q0VD86 236 aa18.75■□□□□ 0.59
SNX1-208ENST00000559844 SGO2Q562F6 1265 aa18.75■□□□□ 0.59
SNX1-208ENST00000559844 PPP1R15BQ5SWA1 713 aa18.75■□□□□ 0.59
SNX1-208ENST00000559844 C9orf50Q5SZB4 431 aa18.75■□□□□ 0.59
SNX1-208ENST00000559844 LRRC38Q5VT99 294 aa18.75■□□□□ 0.59
SNX1-208ENST00000559844 TMCO2Q7Z6W1 182 aaPredicted RBP18.75■□□□□ 0.59
SNX1-208ENST00000559844 CCDC105Q8IYK2 499 aa18.75■□□□□ 0.59
SNX1-208ENST00000559844 CRIPAKQ8N1N5 446 aa18.75■□□□□ 0.59
SNX1-208ENST00000559844 SLCO2A1Q92959 643 aa18.75■□□□□ 0.59
SNX1-208ENST00000559844 SNX27Q96L92 541 aa18.75■□□□□ 0.59
SNX1-208ENST00000559844 ZFP42Q96MM3 310 aa18.75■□□□□ 0.59
SNX1-208ENST00000559844 TSPAN18Q96SJ8 248 aa18.75■□□□□ 0.59
SNX1-208ENST00000559844 GDF15Q99988 308 aa18.75■□□□□ 0.59
SNX1-208ENST00000559844 ELOVL4Q9GZR5 314 aa18.75■□□□□ 0.59
SNX1-208ENST00000559844 MTIF3Q9H2K0 278 aaKnown RBP18.75■□□□□ 0.59
SNX1-208ENST00000559844 RSAD1Q9HA92 442 aa18.75■□□□□ 0.59
SNX1-208ENST00000559844 BARX2Q9UMQ3 279 aaPredicted RBP18.75■□□□□ 0.59
SNX1-208ENST00000559844 TCRBV7S2A1N4TA0A589 114 aa18.74■□□□□ 0.59
SNX1-208ENST00000559844 MLH1P40692 756 aa18.74■□□□□ 0.59
SNX1-208ENST00000559844 TAS2R40P59535 323 aa18.74■□□□□ 0.59
SNX1-208ENST00000559844 SPDYCQ5MJ68 293 aa18.74■□□□□ 0.59
SNX1-208ENST00000559844 FAM117BQ6P1L5 589 aa18.74■□□□□ 0.59
SNX1-208ENST00000559844 TTC27Q6P3X3 843 aa18.74■□□□□ 0.59
SNX1-208ENST00000559844 LRIG3Q6UXM1 1119 aa18.74■□□□□ 0.59
SNX1-208ENST00000559844 BEST2Q8NFU1 509 aa18.74■□□□□ 0.59
SNX1-208ENST00000559844 MCEEQ96PE7 176 aa18.74■□□□□ 0.59
SNX1-208ENST00000559844 GAD1Q99259 594 aa18.74■□□□□ 0.59
SNX1-208ENST00000559844 FAM129AQ9BZQ8 928 aa18.74■□□□□ 0.59
SNX1-208ENST00000559844 NEUROG2Q9H2A3 272 aa18.74■□□□□ 0.59
SNX1-208ENST00000559844 CXCL16Q9H2A7 254 aa18.74■□□□□ 0.59
SNX1-208ENST00000559844 USTQ9Y2C2 406 aa18.74■□□□□ 0.59
SNX1-208ENST00000559844 ECEL1O95672 775 aa18.73■□□□□ 0.59
SNX1-208ENST00000559844 SSR1P43307 286 aaKnown RBP18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms