RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 ATG4AQ8WYN0 398 aa3.48□□□□□ -1.85
VPS13C-205ENST00000558088 GLG1Q92896 1179 aa3.48□□□□□ -1.85
VPS13C-205ENST00000558088 FYTTD1Q96QD9 318 aaKnown RBP3.48□□□□□ -1.85
VPS13C-205ENST00000558088 SNX18Q96RF0 628 aa3.48□□□□□ -1.85
VPS13C-205ENST00000558088 DPCDQ9BVM2 203 aaPredicted RBP3.48□□□□□ -1.85
VPS13C-205ENST00000558088 MRPL46Q9H2W6 279 aaKnown RBP3.48□□□□□ -1.85
VPS13C-205ENST00000558088 PI4KBQ9UBF8 816 aa3.48□□□□□ -1.85
VPS13C-205ENST00000558088 SHOC2Q9UQ13 582 aa3.48□□□□□ -1.85
VPS13C-205ENST00000558088 PCDHGA9Q9Y5G4 932 aaKnown RBP3.48□□□□□ -1.85
VPS13C-205ENST00000558088 PCDHGA8Q9Y5G5 932 aa3.48□□□□□ -1.85
VPS13C-205ENST00000558088 PCDHGA7Q9Y5G6 932 aa3.48□□□□□ -1.85
VPS13C-205ENST00000558088 PCDHGA6Q9Y5G7 932 aa3.48□□□□□ -1.85
VPS13C-205ENST00000558088 PCDHGA3Q9Y5H0 932 aa3.48□□□□□ -1.85
VPS13C-205ENST00000558088 TMEM232C9JQI7 657 aa3.47□□□□□ -1.85
VPS13C-205ENST00000558088 TJP3O95049 919 aa3.47□□□□□ -1.85
VPS13C-205ENST00000558088 FTLP02792 175 aaPredicted RBP3.47□□□□□ -1.85
VPS13C-205ENST00000558088 CCND1P24385 295 aa3.47□□□□□ -1.85
VPS13C-205ENST00000558088 ATP5F1P24539 256 aaPredicted RBP3.47□□□□□ -1.85
VPS13C-205ENST00000558088 KCNJ5P48544 419 aa3.47□□□□□ -1.85
VPS13C-205ENST00000558088 KRTAP10-6P60371 365 aaPredicted RBP3.47□□□□□ -1.85
VPS13C-205ENST00000558088 GHRHRQ02643 423 aa3.47□□□□□ -1.85
VPS13C-205ENST00000558088 ITKQ08881 620 aa3.47□□□□□ -1.85
VPS13C-205ENST00000558088 TWIST1Q15672 202 aa3.47□□□□□ -1.85
VPS13C-205ENST00000558088 CCDC157Q569K6 752 aa3.47□□□□□ -1.85
VPS13C-205ENST00000558088 L1TD1Q5T7N2 865 aaKnown RBP3.47□□□□□ -1.85
VPS13C-205ENST00000558088 DDX42Q86XP3 938 aaKnown RBP eCLIP3.47□□□□□ -1.85
VPS13C-205ENST00000558088 NRACQ8N912 160 aa3.47□□□□□ -1.85
VPS13C-205ENST00000558088 PCSK9Q8NBP7 692 aaKnown RBP3.47□□□□□ -1.85
VPS13C-205ENST00000558088 C16orf52Q8NHV5 167 aa3.47□□□□□ -1.85
VPS13C-205ENST00000558088 BRIX1Q8TDN6 353 aaKnown RBP3.47□□□□□ -1.85
VPS13C-205ENST00000558088 MTMR8Q96EF0 704 aa3.47□□□□□ -1.85
VPS13C-205ENST00000558088 CIPCQ9C0C6 399 aa3.47□□□□□ -1.85
VPS13C-205ENST00000558088 LMBRD1Q9NUN5 540 aa3.47□□□□□ -1.85
VPS13C-205ENST00000558088 SERPINB13Q9UIV8 391 aa3.47□□□□□ -1.85
VPS13C-205ENST00000558088 TRHDEQ9UKU6 1024 aa3.47□□□□□ -1.85
VPS13C-205ENST00000558088 GCATO75600 419 aa3.46□□□□□ -1.86
VPS13C-205ENST00000558088 OAZ2O95190 189 aa3.46□□□□□ -1.86
VPS13C-205ENST00000558088 CYP2A6P11509 494 aaPredicted RBP3.46□□□□□ -1.86
VPS13C-205ENST00000558088 PDE6CP51160 858 aa3.46□□□□□ -1.86
VPS13C-205ENST00000558088 HK3P52790 923 aa3.46□□□□□ -1.86
VPS13C-205ENST00000558088 LILRA4P59901 499 aa3.46□□□□□ -1.86
VPS13C-205ENST00000558088 BOP1Q14137 746 aaKnown RBP3.46□□□□□ -1.86
VPS13C-205ENST00000558088 PCBP2Q15366 365 aaKnown RBP eCLIP3.46□□□□□ -1.86
VPS13C-205ENST00000558088 RBMS2Q15434 407 aaKnown RBP3.46□□□□□ -1.86
VPS13C-205ENST00000558088 ZNF813Q6ZN06 617 aa3.46□□□□□ -1.86
VPS13C-205ENST00000558088 VPS33BQ9H267 617 aa3.46□□□□□ -1.86
VPS13C-205ENST00000558088 TRMT13Q9NUP7 481 aaKnown RBP3.46□□□□□ -1.86
VPS13C-205ENST00000558088 SCAF8Q9UPN6 1271 aaKnown RBP3.46□□□□□ -1.86
VPS13C-205ENST00000558088 SSX2IPQ9Y2D8 614 aa3.46□□□□□ -1.86
VPS13C-205ENST00000558088 CCDC187A0A096LP49 1063 aa3.45□□□□□ -1.86
VPS13C-205ENST00000558088 MYO1CO00159 1063 aa3.45□□□□□ -1.86
VPS13C-205ENST00000558088 PDE8BO95263 885 aa3.45□□□□□ -1.86
VPS13C-205ENST00000558088 AHSGP02765 367 aa3.45□□□□□ -1.86
VPS13C-205ENST00000558088 PHKG2P15735 406 aa3.45□□□□□ -1.86
VPS13C-205ENST00000558088 LRPAP1P30533 357 aa3.45□□□□□ -1.86
VPS13C-205ENST00000558088 VIPR2P41587 438 aa3.45□□□□□ -1.86
VPS13C-205ENST00000558088 RENBPP51606 427 aa3.45□□□□□ -1.86
VPS13C-205ENST00000558088 C4orf46Q504U0 113 aa3.45□□□□□ -1.86
VPS13C-205ENST00000558088 GIMAP6Q6P9H5 292 aa3.45□□□□□ -1.86
VPS13C-205ENST00000558088 IRF2BP2Q7Z5L9 587 aa3.45□□□□□ -1.86
VPS13C-205ENST00000558088 SLC15A3Q8IY34 581 aa3.45□□□□□ -1.86
VPS13C-205ENST00000558088 SMRP1Q8NCR6 262 aa3.45□□□□□ -1.86
VPS13C-205ENST00000558088 OSCP1Q8WVF1 389 aa3.45□□□□□ -1.86
VPS13C-205ENST00000558088 SOCS4Q8WXH5 440 aa3.45□□□□□ -1.86
VPS13C-205ENST00000558088 COQ8BQ96D53 544 aa3.45□□□□□ -1.86
VPS13C-205ENST00000558088 MTFMTQ96DP5 389 aaKnown RBP3.45□□□□□ -1.86
VPS13C-205ENST00000558088 MARK4Q96L34 752 aa3.45□□□□□ -1.86
VPS13C-205ENST00000558088 FAM126AQ9BYI3 521 aaPredicted RBP3.45□□□□□ -1.86
VPS13C-205ENST00000558088 KRTAP2-2Q9BYT5 123 aa3.45□□□□□ -1.86
VPS13C-205ENST00000558088 ATP8A1Q9Y2Q0 1164 aa3.45□□□□□ -1.86
VPS13C-205ENST00000558088 PLEKHM1Q9Y4G2 1056 aa3.45□□□□□ -1.86
VPS13C-205ENST00000558088 PCDHA1Q9Y5I3 950 aa3.45□□□□□ -1.86
VPS13C-205ENST00000558088 PRR23D1E9PI22 279 aaPredicted RBP3.44□□□□□ -1.86
VPS13C-205ENST00000558088 H3BUI4 141 aa3.44□□□□□ -1.86
VPS13C-205ENST00000558088 FCHO1O14526 889 aa3.44□□□□□ -1.86
VPS13C-205ENST00000558088 GABRDO14764 452 aa3.44□□□□□ -1.86
VPS13C-205ENST00000558088 DCLK1O15075 740 aa3.44□□□□□ -1.86
VPS13C-205ENST00000558088 UNC5CO95185 931 aa3.44□□□□□ -1.86
VPS13C-205ENST00000558088 GRPP07492 148 aa3.44□□□□□ -1.86
VPS13C-205ENST00000558088 PRR23D2P0DMB1 279 aaPredicted RBP3.44□□□□□ -1.86
VPS13C-205ENST00000558088 MYCLP12524 364 aaPredicted RBP3.44□□□□□ -1.86
VPS13C-205ENST00000558088 TYRP14679 529 aa3.44□□□□□ -1.86
VPS13C-205ENST00000558088 GUCY2FP51841 1108 aa3.44□□□□□ -1.86
VPS13C-205ENST00000558088 SP2Q02086 613 aa3.44□□□□□ -1.86
VPS13C-205ENST00000558088 EXOSC9Q06265 439 aaKnown RBP3.44□□□□□ -1.86
VPS13C-205ENST00000558088 PTPN21Q16825 1174 aa3.44□□□□□ -1.86
VPS13C-205ENST00000558088 FAM187BQ17R55 369 aa3.44□□□□□ -1.86
VPS13C-205ENST00000558088 DEPDC1Q5TB30 811 aa3.44□□□□□ -1.86
VPS13C-205ENST00000558088 PPP1R3BQ86XI6 285 aa3.44□□□□□ -1.86
VPS13C-205ENST00000558088 ADAMTS18Q8TE60 1221 aa3.44□□□□□ -1.86
VPS13C-205ENST00000558088 CCDC17Q96LX7 622 aa3.44□□□□□ -1.86
VPS13C-205ENST00000558088 EFHD1Q9BUP0 239 aa3.44□□□□□ -1.86
VPS13C-205ENST00000558088 FOXP1Q9H334 677 aaPredicted RBP3.44□□□□□ -1.86
VPS13C-205ENST00000558088 SARS2Q9NP81 518 aaKnown RBP3.44□□□□□ -1.86
VPS13C-205ENST00000558088 POT1Q9NUX5 634 aa3.44□□□□□ -1.86
VPS13C-205ENST00000558088 PNPOQ9NVS9 261 aa3.44□□□□□ -1.86
VPS13C-205ENST00000558088 MTMR4Q9NYA4 1195 aa3.44□□□□□ -1.86
VPS13C-205ENST00000558088 USP35Q9P2H5 1018 aa3.44□□□□□ -1.86
VPS13C-205ENST00000558088 ZNF112Q9UJU3 913 aa3.44□□□□□ -1.86
VPS13C-205ENST00000558088 NDRG4Q9ULP0 352 aaKnown RBP3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms