RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 ZNF81P51508 661 aa6.33□□□□□ -1.4
PRPF39-209ENST00000556353 UCP3P55916 312 aa6.33□□□□□ -1.4
PRPF39-209ENST00000556353 SP2Q02086 613 aa6.33□□□□□ -1.4
PRPF39-209ENST00000556353 MCL1Q07820 350 aa6.33□□□□□ -1.4
PRPF39-209ENST00000556353 PCID2Q5JVF3 399 aa6.33□□□□□ -1.4
PRPF39-209ENST00000556353 PAPD7Q5XG87 772 aaKnown RBP6.33□□□□□ -1.4
PRPF39-209ENST00000556353 VGLL2Q8N8G2 317 aa6.33□□□□□ -1.4
PRPF39-209ENST00000556353 JPH3Q8WXH2 748 aaPredicted RBP6.33□□□□□ -1.4
PRPF39-209ENST00000556353 GLG1Q92896 1179 aa6.33□□□□□ -1.4
PRPF39-209ENST00000556353 AIFM3Q96NN9 605 aa6.33□□□□□ -1.4
PRPF39-209ENST00000556353 DUSP22Q9NRW4 184 aa6.33□□□□□ -1.4
PRPF39-209ENST00000556353 DDX56Q9NY93 547 aaKnown RBP6.33□□□□□ -1.4
PRPF39-209ENST00000556353 STAP2Q9UGK3 403 aa6.33□□□□□ -1.4
PRPF39-209ENST00000556353 NDRG4Q9ULP0 352 aaKnown RBP6.33□□□□□ -1.4
PRPF39-209ENST00000556353 SNAPC4Q5SXM2 1469 aa6.33□□□□□ -1.4
PRPF39-209ENST00000556353 WDR91A4D1P6 747 aa6.32□□□□□ -1.4
PRPF39-209ENST00000556353 XRCC6P12956 609 aaKnown RBP eCLIP6.32□□□□□ -1.4
PRPF39-209ENST00000556353 ENGP17813 658 aa6.32□□□□□ -1.4
PRPF39-209ENST00000556353 NCLP19338 710 aaKnown RBP6.32□□□□□ -1.4
PRPF39-209ENST00000556353 HTR1BP28222 390 aa6.32□□□□□ -1.4
PRPF39-209ENST00000556353 LRPAP1P30533 357 aa6.32□□□□□ -1.4
PRPF39-209ENST00000556353 SLC11A2P49281 568 aa6.32□□□□□ -1.4
PRPF39-209ENST00000556353 ATXN1P54253 815 aaKnown RBP6.32□□□□□ -1.4
PRPF39-209ENST00000556353 IGBP1P78318 339 aa6.32□□□□□ -1.4
PRPF39-209ENST00000556353 PROSER3Q2NL68 480 aa6.32□□□□□ -1.4
PRPF39-209ENST00000556353 DAAM2Q86T65 1068 aa6.32□□□□□ -1.4
PRPF39-209ENST00000556353 REPS1Q96D71 796 aa6.32□□□□□ -1.4
PRPF39-209ENST00000556353 MRGPRX1Q96LB2 322 aa6.32□□□□□ -1.4
PRPF39-209ENST00000556353 LRGUKQ96M69 825 aa6.32□□□□□ -1.4
PRPF39-209ENST00000556353 C1QTNF7Q9BXJ2 289 aa6.32□□□□□ -1.4
PRPF39-209ENST00000556353 SEMA4CQ9C0C4 833 aa6.32□□□□□ -1.4
PRPF39-209ENST00000556353 ZNF70Q9UC06 446 aaPredicted RBP6.32□□□□□ -1.4
PRPF39-209ENST00000556353 BIVM-ERCC5R4GMW8 1640 aa6.32□□□□□ -1.4
PRPF39-209ENST00000556353 A1L4Q6 167 aa6.31□□□□□ -1.4
PRPF39-209ENST00000556353 hCG_1984214I3L0E3 225 aa6.31□□□□□ -1.4
PRPF39-209ENST00000556353 SMIM22K7EJ46 135 aa6.31□□□□□ -1.4
PRPF39-209ENST00000556353 AKAP10O43572 662 aa6.31□□□□□ -1.4
PRPF39-209ENST00000556353 UBXN7O94888 489 aa6.31□□□□□ -1.4
PRPF39-209ENST00000556353 WNT3P56703 355 aa6.31□□□□□ -1.4
PRPF39-209ENST00000556353 SLC44A4Q53GD3 710 aa6.31□□□□□ -1.4
PRPF39-209ENST00000556353 PARS2Q7L3T8 475 aaKnown RBP6.31□□□□□ -1.4
PRPF39-209ENST00000556353 RP9Q8TA86 221 aaKnown RBP6.31□□□□□ -1.4
PRPF39-209ENST00000556353 STAG1Q8WVM7 1258 aa6.31□□□□□ -1.4
PRPF39-209ENST00000556353 XAGE5Q8WWM1 108 aa6.31□□□□□ -1.4
PRPF39-209ENST00000556353 R3HDM4Q96D70 268 aa6.31□□□□□ -1.4
PRPF39-209ENST00000556353 P2RX7Q99572 595 aaKnown RBP6.31□□□□□ -1.4
PRPF39-209ENST00000556353 CCNL1Q9UK58 526 aaPredicted RBP6.31□□□□□ -1.4
PRPF39-209ENST00000556353 MRPS17Q9Y2R5 130 aaKnown RBP6.31□□□□□ -1.4
PRPF39-209ENST00000556353 SYNJ1O43426 1573 aa6.31□□□□□ -1.4
PRPF39-209ENST00000556353 NPSP0C0P6 89 aa6.3□□□□□ -1.4
PRPF39-209ENST00000556353 CERS1P27544 350 aa6.3□□□□□ -1.4
PRPF39-209ENST00000556353 RAB27AP51159 221 aa6.3□□□□□ -1.4
PRPF39-209ENST00000556353 PDE6CP51160 858 aa6.3□□□□□ -1.4
PRPF39-209ENST00000556353 KRT17Q04695 432 aa6.3□□□□□ -1.4
PRPF39-209ENST00000556353 MYO1EQ12965 1108 aa6.3□□□□□ -1.4
PRPF39-209ENST00000556353 PRAMEF17Q5VTA0 474 aa6.3□□□□□ -1.4
PRPF39-209ENST00000556353 LMBRD2Q68DH5 695 aaPredicted RBP6.3□□□□□ -1.4
PRPF39-209ENST00000556353 C1QL2Q7Z5L3 287 aa6.3□□□□□ -1.4
PRPF39-209ENST00000556353 GLCCI1Q86VQ1 547 aa6.3□□□□□ -1.4
PRPF39-209ENST00000556353 TPH2Q8IWU9 490 aa6.3□□□□□ -1.4
PRPF39-209ENST00000556353 SLC15A3Q8IY34 581 aa6.3□□□□□ -1.4
PRPF39-209ENST00000556353 ZNF778Q96MU6 729 aa6.3□□□□□ -1.4
PRPF39-209ENST00000556353 FSD1LQ9BXM9 530 aa6.3□□□□□ -1.4
PRPF39-209ENST00000556353 GABBR1Q9UBS5 961 aa6.3□□□□□ -1.4
PRPF39-209ENST00000556353 ADAMTS5Q9UNA0 930 aa6.3□□□□□ -1.4
PRPF39-209ENST00000556353 TDRD9Q8NDG6 1382 aaKnown RBP6.3□□□□□ -1.4
PRPF39-209ENST00000556353 ZNF804BA4D1E1 1349 aa6.29□□□□□ -1.4
PRPF39-209ENST00000556353 A0A1W2PPL8 197 aa6.29□□□□□ -1.4
PRPF39-209ENST00000556353 ERC2O15083 957 aa6.29□□□□□ -1.4
PRPF39-209ENST00000556353 LATS1O95835 1130 aa6.29□□□□□ -1.4
PRPF39-209ENST00000556353 ERBB2P04626 1255 aa6.29□□□□□ -1.4
PRPF39-209ENST00000556353 PRR35P0CG20 571 aa6.29□□□□□ -1.4
PRPF39-209ENST00000556353 TPTEP56180 551 aa6.29□□□□□ -1.4
PRPF39-209ENST00000556353 ADAMTS12P58397 1594 aa6.29□□□□□ -1.4
PRPF39-209ENST00000556353 KRTAP10-11P60412 298 aa6.29□□□□□ -1.4
PRPF39-209ENST00000556353 TUBA4AP68366 448 aa6.29□□□□□ -1.4
PRPF39-209ENST00000556353 GTF2H3Q13889 308 aa6.29□□□□□ -1.4
PRPF39-209ENST00000556353 MGAT5BQ3V5L5 792 aa6.29□□□□□ -1.4
PRPF39-209ENST00000556353 MTX3Q5HYI7 312 aa6.29□□□□□ -1.4
PRPF39-209ENST00000556353 EPHA10Q5JZY3 1008 aa6.29□□□□□ -1.4
PRPF39-209ENST00000556353 NAPRTQ6XQN6 538 aa6.29□□□□□ -1.4
PRPF39-209ENST00000556353 ZNF783Q6ZMS7 281 aa6.29□□□□□ -1.4
PRPF39-209ENST00000556353 SLC15A4Q8N697 577 aa6.29□□□□□ -1.4
PRPF39-209ENST00000556353 DNAJC5GQ8N7S2 189 aa6.29□□□□□ -1.4
PRPF39-209ENST00000556353 SLC35G2Q8TBE7 412 aa6.29□□□□□ -1.4
PRPF39-209ENST00000556353 SCARB1Q8WTV0 552 aa6.29□□□□□ -1.4
PRPF39-209ENST00000556353 OSCP1Q8WVF1 389 aa6.29□□□□□ -1.4
PRPF39-209ENST00000556353 KBTBD7Q8WVZ9 684 aa6.29□□□□□ -1.4
PRPF39-209ENST00000556353 CAMKK2Q96RR4 588 aa6.29□□□□□ -1.4
PRPF39-209ENST00000556353 MESP1Q9BRJ9 268 aa6.29□□□□□ -1.4
PRPF39-209ENST00000556353 RTFDC1Q9BY42 306 aaPredicted RBP6.29□□□□□ -1.4
PRPF39-209ENST00000556353 CXorf36Q9H7Y0 433 aa6.29□□□□□ -1.4
PRPF39-209ENST00000556353 TOP2BQ02880 1626 aa6.28□□□□□ -1.4
PRPF39-209ENST00000556353 MAGI1Q96QZ7 1491 aaPredicted RBP6.28□□□□□ -1.4
PRPF39-209ENST00000556353 ERCC6L2Q5T890 1561 aa6.28□□□□□ -1.4
PRPF39-209ENST00000556353 SOGA1O94964 1423 aa6.28□□□□□ -1.4
PRPF39-209ENST00000556353 A0A087WWL8 130 aa6.28□□□□□ -1.4
PRPF39-209ENST00000556353 TISP43B9A030 160 aa6.28□□□□□ -1.4
PRPF39-209ENST00000556353 NHLRC4P0CG21 123 aaPredicted RBP6.28□□□□□ -1.4
PRPF39-209ENST00000556353 NPR1P16066 1061 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms