RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 OSTM1Q86WC4 334 aa19.14■□□□□ 0.65
CLSTN3-214ENST00000542663 RASSF3Q86WH2 238 aa19.14■□□□□ 0.65
CLSTN3-214ENST00000542663 ARL14EPQ8N8R7 260 aaPredicted RBP19.14■□□□□ 0.65
CLSTN3-214ENST00000542663 C1orf127Q8N9H9 656 aa19.14■□□□□ 0.65
CLSTN3-214ENST00000542663 KDF1Q8NAX2 398 aaPredicted RBP19.14■□□□□ 0.65
CLSTN3-214ENST00000542663 TSTD1Q8NFU3 115 aa19.14■□□□□ 0.65
CLSTN3-214ENST00000542663 USP33Q8TEY7 942 aa19.14■□□□□ 0.65
CLSTN3-214ENST00000542663 POMGNT1Q8WZA1 660 aa19.14■□□□□ 0.65
CLSTN3-214ENST00000542663 STRA6Q9BX79 667 aa19.14■□□□□ 0.65
CLSTN3-214ENST00000542663 GTF3C4Q9UKN8 822 aa19.14■□□□□ 0.65
CLSTN3-214ENST00000542663 TCF3P15923 654 aa19.13■□□□□ 0.65
CLSTN3-214ENST00000542663 KCNA1Q09470 495 aa19.13■□□□□ 0.65
CLSTN3-214ENST00000542663 CFAP221Q4G0U5 840 aa19.13■□□□□ 0.65
CLSTN3-214ENST00000542663 ZNF720Q7Z2F6 126 aa19.13■□□□□ 0.65
CLSTN3-214ENST00000542663 SFR1Q86XK3 245 aa19.13■□□□□ 0.65
CLSTN3-214ENST00000542663 SH3RF2Q8TEC5 729 aa19.13■□□□□ 0.65
CLSTN3-214ENST00000542663 LARP4BQ92615 738 aaKnown RBP19.13■□□□□ 0.65
CLSTN3-214ENST00000542663 TMEM9BQ9NQ34 198 aa19.13■□□□□ 0.65
CLSTN3-214ENST00000542663 AGAP1Q9UPQ3 857 aa19.13■□□□□ 0.65
CLSTN3-214ENST00000542663 KHNYNO15037 678 aaKnown RBP19.12■□□□□ 0.65
CLSTN3-214ENST00000542663 CEACAM1P13688 526 aa19.12■□□□□ 0.65
CLSTN3-214ENST00000542663 HNRNPLP14866 589 aaKnown RBP eCLIP19.12■□□□□ 0.65
CLSTN3-214ENST00000542663 CSRP1P21291 193 aaKnown RBP19.12■□□□□ 0.65
CLSTN3-214ENST00000542663 SEC13P55735 322 aa19.12■□□□□ 0.65
CLSTN3-214ENST00000542663 IRX4P78413 519 aa19.12■□□□□ 0.65
CLSTN3-214ENST00000542663 TFAMQ00059 246 aaKnown RBP19.12■□□□□ 0.65
CLSTN3-214ENST00000542663 USP39Q53GS9 565 aaKnown RBP19.12■□□□□ 0.65
CLSTN3-214ENST00000542663 C2orf27AQ580R0 203 aa19.12■□□□□ 0.65
CLSTN3-214ENST00000542663 ANO7Q6IWH7 933 aa19.12■□□□□ 0.65
CLSTN3-214ENST00000542663 TMEM86AQ8N2M4 240 aa19.12■□□□□ 0.65
CLSTN3-214ENST00000542663 MDGA1Q8NFP4 955 aa19.12■□□□□ 0.65
CLSTN3-214ENST00000542663 CNOT6LQ96LI5 555 aaKnown RBP19.12■□□□□ 0.65
CLSTN3-214ENST00000542663 ADAM33Q9BZ11 813 aa19.12■□□□□ 0.65
CLSTN3-214ENST00000542663 KIF3AQ9Y496 699 aa19.12■□□□□ 0.65
CLSTN3-214ENST00000542663 DMXL2Q8TDJ6 3036 aa19.11■□□□□ 0.65
CLSTN3-214ENST00000542663 GON4LQ3T8J9 2241 aa19.11■□□□□ 0.65
CLSTN3-214ENST00000542663 GABRDO14764 452 aa19.11■□□□□ 0.65
CLSTN3-214ENST00000542663 HUS1O60921 280 aa19.11■□□□□ 0.65
CLSTN3-214ENST00000542663 CHRM1P11229 460 aaPredicted RBP19.11■□□□□ 0.65
CLSTN3-214ENST00000542663 HOXB3P14651 431 aaPredicted RBP19.11■□□□□ 0.65
CLSTN3-214ENST00000542663 MYL7Q01449 175 aa19.11■□□□□ 0.65
CLSTN3-214ENST00000542663 NR1H3Q13133 447 aa19.11■□□□□ 0.65
CLSTN3-214ENST00000542663 CYP2U1Q7Z449 544 aa19.11■□□□□ 0.65
CLSTN3-214ENST00000542663 C11orf74Q86VG3 221 aa19.11■□□□□ 0.65
CLSTN3-214ENST00000542663 BRSK2Q8IWQ3 736 aa19.11■□□□□ 0.65
CLSTN3-214ENST00000542663 GATA6Q92908 595 aa19.11■□□□□ 0.65
CLSTN3-214ENST00000542663 HVCN1Q96D96 273 aa19.11■□□□□ 0.65
CLSTN3-214ENST00000542663 FAM213AQ9BRX8 229 aa19.11■□□□□ 0.65
CLSTN3-214ENST00000542663 GDAP2Q9NXN4 497 aa19.11■□□□□ 0.65
CLSTN3-214ENST00000542663 MMP17Q9ULZ9 603 aa19.11■□□□□ 0.65
CLSTN3-214ENST00000542663 ARHGAP26Q9UNA1 814 aa19.11■□□□□ 0.65
CLSTN3-214ENST00000542663 PCDH15Q96QU1 1955 aa19.11■□□□□ 0.65
CLSTN3-214ENST00000542663 HDCP19113 662 aa19.1■□□□□ 0.65
CLSTN3-214ENST00000542663 LONP1P36776 959 aaKnown RBP19.1■□□□□ 0.65
CLSTN3-214ENST00000542663 POSTNQ15063 836 aa19.1■□□□□ 0.65
CLSTN3-214ENST00000542663 CRY1Q16526 586 aa19.1■□□□□ 0.65
CLSTN3-214ENST00000542663 FAM171BQ6P995 826 aa19.1■□□□□ 0.65
CLSTN3-214ENST00000542663 TMEM92Q6UXU6 159 aa19.1■□□□□ 0.65
CLSTN3-214ENST00000542663 DYMQ7RTS9 669 aa19.1■□□□□ 0.65
CLSTN3-214ENST00000542663 SPATA2LQ8IUW3 424 aaPredicted RBP19.1■□□□□ 0.65
CLSTN3-214ENST00000542663 SFTPA1Q8IWL2 248 aa19.1■□□□□ 0.65
CLSTN3-214ENST00000542663 SCN4BQ8IWT1 228 aa19.1■□□□□ 0.65
CLSTN3-214ENST00000542663 CCDC33Q8N5R6 958 aa19.1■□□□□ 0.65
CLSTN3-214ENST00000542663 LRRC52Q8N7C0 313 aa19.1■□□□□ 0.65
CLSTN3-214ENST00000542663 FSIP1Q8NA03 581 aa19.1■□□□□ 0.65
CLSTN3-214ENST00000542663 OLIG1Q8TAK6 271 aa19.1■□□□□ 0.65
CLSTN3-214ENST00000542663 SAAL1Q96ER3 474 aa19.1■□□□□ 0.65
CLSTN3-214ENST00000542663 FUBP3Q96I24 572 aaKnown RBP eCLIP19.1■□□□□ 0.65
CLSTN3-214ENST00000542663 SCNM1Q9BWG6 230 aa19.1■□□□□ 0.65
CLSTN3-214ENST00000542663 SIX4Q9UIU6 781 aa19.1■□□□□ 0.65
CLSTN3-214ENST00000542663 SNX9Q9Y5X1 595 aa19.1■□□□□ 0.65
CLSTN3-214ENST00000542663 ATP2C2O75185 946 aa19.09■□□□□ 0.65
CLSTN3-214ENST00000542663 NFATC1O95644 943 aa19.09■□□□□ 0.65
CLSTN3-214ENST00000542663 GJB2P29033 226 aa19.09■□□□□ 0.65
CLSTN3-214ENST00000542663 DDIT3P35638 169 aa19.09■□□□□ 0.65
CLSTN3-214ENST00000542663 MAGEA11P43364 429 aa19.09■□□□□ 0.65
CLSTN3-214ENST00000542663 DHPSP49366 369 aaPredicted RBP19.09■□□□□ 0.65
CLSTN3-214ENST00000542663 MESP2Q0VG99 397 aa19.09■□□□□ 0.65
CLSTN3-214ENST00000542663 KCNB1Q14721 858 aa19.09■□□□□ 0.65
CLSTN3-214ENST00000542663 SOWAHAQ2M3V2 549 aa19.09■□□□□ 0.65
CLSTN3-214ENST00000542663 ADGRF2Q8IZF7 708 aa19.09■□□□□ 0.65
CLSTN3-214ENST00000542663 CSGALNACT2Q8N6G5 542 aa19.09■□□□□ 0.65
CLSTN3-214ENST00000542663 TOP6BLQ8N6T0 577 aa19.09■□□□□ 0.65
CLSTN3-214ENST00000542663 KRI1Q8N9T8 703 aaKnown RBP19.09■□□□□ 0.65
CLSTN3-214ENST00000542663 RASSF8Q8NHQ8 419 aa19.09■□□□□ 0.65
CLSTN3-214ENST00000542663 CCDC26Q8TAB7 109 aa19.09■□□□□ 0.65
CLSTN3-214ENST00000542663 SPATA18Q8TC71 538 aa19.09■□□□□ 0.65
CLSTN3-214ENST00000542663 ZFYVE26Q68DK2 2539 aa19.09■□□□□ 0.65
CLSTN3-214ENST00000542663 ATRXP46100 2492 aa19.09■□□□□ 0.65
CLSTN3-214ENST00000542663 H3BQV1 296 aa19.08■□□□□ 0.64
CLSTN3-214ENST00000542663 CYP17A1P05093 508 aa19.08■□□□□ 0.64
CLSTN3-214ENST00000542663 LHX1P48742 406 aa19.08■□□□□ 0.64
CLSTN3-214ENST00000542663 USP46P62068 366 aa19.08■□□□□ 0.64
CLSTN3-214ENST00000542663 COL9A2Q14055 689 aaPredicted RBP19.08■□□□□ 0.64
CLSTN3-214ENST00000542663 USP49Q70CQ1 688 aa19.08■□□□□ 0.64
CLSTN3-214ENST00000542663 LIMS2Q7Z4I7 341 aa19.08■□□□□ 0.64
CLSTN3-214ENST00000542663 FRMD1Q8N878 549 aa19.08■□□□□ 0.64
CLSTN3-214ENST00000542663 DEFB124Q8NES8 71 aa19.08■□□□□ 0.64
CLSTN3-214ENST00000542663 CACTINQ8WUQ7 758 aaKnown RBP19.08■□□□□ 0.64
CLSTN3-214ENST00000542663 PIGKQ92643 395 aa19.08■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms