RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 DUS2Q9NX74 493 aaKnown RBP15.76■□□□□ 0.11
VPS28-215ENST00000531924 DLL3Q9NYJ7 618 aa15.76■□□□□ 0.11
VPS28-215ENST00000531924 SLC8A2Q9UPR5 921 aa15.76■□□□□ 0.11
VPS28-215ENST00000531924 DMXL1Q9Y485 3027 aa15.76■□□□□ 0.11
VPS28-215ENST00000531924 TCHHQ07283 1943 aa15.76■□□□□ 0.11
VPS28-215ENST00000531924 FANCMQ8IYD8 2048 aa15.75■□□□□ 0.11
VPS28-215ENST00000531924 GPR179Q6PRD1 2367 aa15.75■□□□□ 0.11
VPS28-215ENST00000531924 COL4A2P08572 1712 aa15.75■□□□□ 0.11
VPS28-215ENST00000531924 RETP07949 1114 aa15.75■□□□□ 0.11
VPS28-215ENST00000531924 ZSCAN22P10073 491 aaPredicted RBP15.75■□□□□ 0.11
VPS28-215ENST00000531924 ARSAP15289 507 aa15.75■□□□□ 0.11
VPS28-215ENST00000531924 HDCP19113 662 aa15.75■□□□□ 0.11
VPS28-215ENST00000531924 WARSP23381 471 aaKnown RBP15.75■□□□□ 0.11
VPS28-215ENST00000531924 BDNFP23560 247 aa15.75■□□□□ 0.11
VPS28-215ENST00000531924 LMO2P25791 158 aa15.75■□□□□ 0.11
VPS28-215ENST00000531924 HOXD13P35453 343 aa15.75■□□□□ 0.11
VPS28-215ENST00000531924 GNL1P36915 607 aaPredicted RBP15.75■□□□□ 0.11
VPS28-215ENST00000531924 DMWDQ09019 674 aa15.75■□□□□ 0.11
VPS28-215ENST00000531924 SPEM2Q0P670 501 aa15.75■□□□□ 0.11
VPS28-215ENST00000531924 NR1H3Q13133 447 aa15.75■□□□□ 0.11
VPS28-215ENST00000531924 MTF1Q14872 753 aa15.75■□□□□ 0.11
VPS28-215ENST00000531924 CCDC142Q17RM4 750 aa15.75■□□□□ 0.11
VPS28-215ENST00000531924 CNNM4Q6P4Q7 775 aa15.75■□□□□ 0.11
VPS28-215ENST00000531924 FAM171BQ6P995 826 aa15.75■□□□□ 0.11
VPS28-215ENST00000531924 EPM2AIP1Q7L775 607 aaPredicted RBP15.75■□□□□ 0.11
VPS28-215ENST00000531924 OR6B3Q8NGW1 331 aa15.75■□□□□ 0.11
VPS28-215ENST00000531924 ATP2A3Q93084 1043 aa15.75■□□□□ 0.11
VPS28-215ENST00000531924 SNX21Q969T3 373 aa15.75■□□□□ 0.11
VPS28-215ENST00000531924 CYP2S1Q96SQ9 504 aa15.75■□□□□ 0.11
VPS28-215ENST00000531924 BLZF1Q9H2G9 400 aa15.75■□□□□ 0.11
VPS28-215ENST00000531924 HPS4Q9NQG7 708 aa15.75■□□□□ 0.11
VPS28-215ENST00000531924 TRPM5Q9NZQ8 1165 aa15.75■□□□□ 0.11
VPS28-215ENST00000531924 CFAP45Q9UL16 551 aa15.75■□□□□ 0.11
VPS28-215ENST00000531924 K7ESF4 209 aa15.74■□□□□ 0.11
VPS28-215ENST00000531924 TRDMT1O14717 391 aaKnown RBP15.74■□□□□ 0.11
VPS28-215ENST00000531924 TRIM66O15016 1216 aa15.74■□□□□ 0.11
VPS28-215ENST00000531924 HRO43593 1189 aa15.74■□□□□ 0.11
VPS28-215ENST00000531924 EXOC3O60645 756 aa15.74■□□□□ 0.11
VPS28-215ENST00000531924 ABL1P00519 1130 aa15.74■□□□□ 0.11
VPS28-215ENST00000531924 DRD1P21728 446 aa15.74■□□□□ 0.11
VPS28-215ENST00000531924 AFMP43652 599 aa15.74■□□□□ 0.11
VPS28-215ENST00000531924 CYP24A1Q07973 514 aa15.74■□□□□ 0.11
VPS28-215ENST00000531924 PSMD6Q15008 389 aa15.74■□□□□ 0.11
VPS28-215ENST00000531924 WDR72Q3MJ13 1102 aa15.74■□□□□ 0.11
VPS28-215ENST00000531924 TMEM196Q5HYL7 178 aa15.74■□□□□ 0.11
VPS28-215ENST00000531924 DENND5BQ6ZUT9 1274 aa15.74■□□□□ 0.11
VPS28-215ENST00000531924 ARL14EPQ8N8R7 260 aaPredicted RBP15.74■□□□□ 0.11
VPS28-215ENST00000531924 GOLGA5Q8TBA6 731 aa15.74■□□□□ 0.11
VPS28-215ENST00000531924 MYCBPAPQ8TBZ2 947 aa15.74■□□□□ 0.11
VPS28-215ENST00000531924 OSCP1Q8WVF1 389 aa15.74■□□□□ 0.11
VPS28-215ENST00000531924 SCFD1Q8WVM8 642 aa15.74■□□□□ 0.11
VPS28-215ENST00000531924 KBTBD7Q8WVZ9 684 aa15.74■□□□□ 0.11
VPS28-215ENST00000531924 SPATA17Q96L03 361 aa15.74■□□□□ 0.11
VPS28-215ENST00000531924 CEP295NLQ96MC4 621 aa15.74■□□□□ 0.11
VPS28-215ENST00000531924 CGRRF1Q99675 332 aa15.74■□□□□ 0.11
VPS28-215ENST00000531924 P2RY13Q9BPV8 354 aa15.74■□□□□ 0.11
VPS28-215ENST00000531924 SLC39A2Q9NP94 309 aa15.74■□□□□ 0.11
VPS28-215ENST00000531924 CGNQ9P2M7 1197 aaKnown RBP15.74■□□□□ 0.11
VPS28-215ENST00000531924 PVALEFA0A1B0GWK0 134 aa15.73■□□□□ 0.11
VPS28-215ENST00000531924 TGFB1I1O43294 461 aa15.73■□□□□ 0.11
VPS28-215ENST00000531924 TADA3O75528 432 aa15.73■□□□□ 0.11
VPS28-215ENST00000531924 F13A1P00488 732 aa15.73■□□□□ 0.11
VPS28-215ENST00000531924 HOXA6P31267 233 aa15.73■□□□□ 0.11
VPS28-215ENST00000531924 SRSF5Q13243 272 aaKnown RBP15.73■□□□□ 0.11
VPS28-215ENST00000531924 BIRC3Q13489 604 aa15.73■□□□□ 0.11
VPS28-215ENST00000531924 MDH1BQ5I0G3 518 aa15.73■□□□□ 0.11
VPS28-215ENST00000531924 WDR44Q5JSH3 913 aa15.73■□□□□ 0.11
VPS28-215ENST00000531924 ATL3Q6DD88 541 aa15.73■□□□□ 0.11
VPS28-215ENST00000531924 FSTL4Q6MZW2 842 aa15.73■□□□□ 0.11
VPS28-215ENST00000531924 WDR5BQ86VZ2 330 aa15.73■□□□□ 0.11
VPS28-215ENST00000531924 SH3RF2Q8TEC5 729 aa15.73■□□□□ 0.11
VPS28-215ENST00000531924 MRPL45Q9BRJ2 306 aaKnown RBP15.73■□□□□ 0.11
VPS28-215ENST00000531924 ECT2Q9H8V3 914 aa15.73■□□□□ 0.11
VPS28-215ENST00000531924 CRTAC1Q9NQ79 661 aa15.73■□□□□ 0.11
VPS28-215ENST00000531924 NXF1Q9UBU9 619 aaKnown RBP15.73■□□□□ 0.11
VPS28-215ENST00000531924 WNT6Q9Y6F9 365 aa15.73■□□□□ 0.11
VPS28-215ENST00000531924 NUP210Q8TEM1 1887 aaPredicted RBP15.73■□□□□ 0.11
VPS28-215ENST00000531924 C2orf78A6NCI8 922 aa15.72■□□□□ 0.11
VPS28-215ENST00000531924 OTOL1A6NHN0 477 aaPredicted RBP15.72■□□□□ 0.11
VPS28-215ENST00000531924 LRP3O75074 770 aa15.72■□□□□ 0.11
VPS28-215ENST00000531924 RNF40O75150 1001 aa15.72■□□□□ 0.11
VPS28-215ENST00000531924 CST3P01034 146 aaPredicted RBP15.72■□□□□ 0.11
VPS28-215ENST00000531924 FAM163BP0C2L3 166 aa15.72■□□□□ 0.11
VPS28-215ENST00000531924 CCDC192P0DO97 292 aa15.72■□□□□ 0.11
VPS28-215ENST00000531924 CASP1P29466 404 aa15.72■□□□□ 0.11
VPS28-215ENST00000531924 GJA4P35212 333 aa15.72■□□□□ 0.11
VPS28-215ENST00000531924 GALK1P51570 392 aa15.72■□□□□ 0.11
VPS28-215ENST00000531924 PSMD2Q13200 908 aa15.72■□□□□ 0.11
VPS28-215ENST00000531924 KNOP1Q1ED39 458 aaKnown RBP15.72■□□□□ 0.11
VPS28-215ENST00000531924 FBXO43Q4G163 708 aa15.72■□□□□ 0.11
VPS28-215ENST00000531924 LIMS2Q7Z4I7 341 aa15.72■□□□□ 0.11
VPS28-215ENST00000531924 CCDC26Q8TAB7 109 aa15.72■□□□□ 0.11
VPS28-215ENST00000531924 SYAP1Q96A49 352 aaPredicted RBP15.72■□□□□ 0.11
VPS28-215ENST00000531924 PCED1BQ96HM7 432 aa15.72■□□□□ 0.11
VPS28-215ENST00000531924 SLC22A12Q96S37 553 aa15.72■□□□□ 0.11
VPS28-215ENST00000531924 ELOVL4Q9GZR5 314 aa15.72■□□□□ 0.11
VPS28-215ENST00000531924 C2orf42Q9NWW7 574 aa15.72■□□□□ 0.11
VPS28-215ENST00000531924 PCDHA7Q9UN72 937 aa15.72■□□□□ 0.11
VPS28-215ENST00000531924 MED19A0JLT2 244 aaPredicted RBP15.71■□□□□ 0.11
VPS28-215ENST00000531924 A8MXQ7 604 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms